Data from Lunardon et al. (2020)
Data from Lunardon et al. (2020)Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database
Click links below to show sub-sets of annotations
| ShortStack | miRBase21-BestBlastHit | |
| MIRNA | 32 | 21 |
| nearMIRNA | 59 | 13 |
| siRNA20 | 92 | 0 |
| siRNA21 | 531 | 10 |
| siRNA22 | 175 | 2 |
| siRNA23 | 478 | 0 |
| siRNA24 | 6,340 | 0 |
| OtherRNA | 4,881 | 17 |
| NotExpressed | 0 | 19 |
| accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
|---|---|---|---|---|---|---|---|---|---|---|
| GSM2805293 | 1,787,932 | 329,282 | GEO | 1 | leaf | Scavina 6 | wt | A | 1 | leaf (immature green leaf stage -- tip of the leaves) -- control conditions |