het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-MIR166a-m1Theobroma cacao (Cacao) 1.1scaffold_1:29987851-29987968+1,386654.63UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-2076Theobroma cacao (Cacao) 1.1scaffold_1:29987871-29987951+1,386654.63UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
tcc-MIR164a-m1Theobroma cacao (Cacao) 1.1scaffold_1:32896077-32896204-115.20UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-2259Theobroma cacao (Cacao) 1.1scaffold_1:32896095-32896184-115.20UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
tcc-MIR403a-m1Theobroma cacao (Cacao) 1.1scaffold_1:33727938-33728063+6731.65UUAGAUUCACGCACAAACUCGmiR403MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-2305Theobroma cacao (Cacao) 1.1scaffold_1:33727958-33728044+6731.65UUAGAUUCACGCACAAACUCGmiR403MIRNAShortStack
tcc-b1.1r1-2339Theobroma cacao (Cacao) 1.1scaffold_1:34189655-34189751-17884.07AUGCACUGCCUCUUCCCUGGCmiR408MIRNAShortStack
tcc-b1.1r1-2394Theobroma cacao (Cacao) 1.1scaffold_1:34923807-34923942-2,3501,109.95GGAAUGUUGUCUGGCUCGAGGmiR166MIRNAShortStack
tcc-b1.1r1-2428Theobroma cacao (Cacao) 1.1scaffold_1:35431196-35431444-411194.12ACUCUCUUUCGAAGGCUUCAAGMIRNAShortStack
tcc-MIR172b-m1Theobroma cacao (Cacao) 1.1scaffold_10r:4747448-4747607-14066.13AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-302Theobroma cacao (Cacao) 1.1scaffold_10r:4747463-4747592-14066.13AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
tcc-MIR166b-m1Theobroma cacao (Cacao) 1.1scaffold_2:1993038-1993214-8,7704,142.24UCGGACCAGGCUUCAUUCCCUmiR166MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-2719Theobroma cacao (Cacao) 1.1scaffold_2:1993287-1993366-10,2174,825.68UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
tcc-MIR394b-m1Theobroma cacao (Cacao) 1.1scaffold_2:2087619-2087743+312147.36UUGGCAUUCUGUCCACCUCCmiR394MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-2724Theobroma cacao (Cacao) 1.1scaffold_2:2087632-2087747+312147.36UUGGCAUUCUGUCCACCUCCmiR394MIRNAShortStack
tcc-b1.1r1-3056Theobroma cacao (Cacao) 1.1scaffold_2:8336921-8337013+2511.81UGAAGUCCUUGGGGCGAGUGCMIRNAShortStack
tcc-b1.1r1-3059Theobroma cacao (Cacao) 1.1scaffold_2:8461375-8461470+104.72GAAGUCCUUGUGGGAGAGUACMIRNAShortStack
tcc-b1.1r1-3418Theobroma cacao (Cacao) 1.1scaffold_2:22809938-22810134+2,8551,348.47UCUUCCCAACACCUCCCAUACCmiR482MIRNAShortStack
tcc-b1.1r1-4047Theobroma cacao (Cacao) 1.1scaffold_2:41716785-41716876-2411.34UGAAGUGUUUGGGGGAACUCUmiR395MIRNAShortStack
tcc-MIR162-m1Theobroma cacao (Cacao) 1.1scaffold_3:22612615-22612745-846399.58UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-4690Theobroma cacao (Cacao) 1.1scaffold_3:22612633-22612724-846399.58UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
tcc-MIR393b-m1Theobroma cacao (Cacao) 1.1scaffold_3:26617286-26617443-209.45UCCAAAGGGAUCGCAUUGAUUUmiR393MIRNAmiRBase21-BestBlastHit
tcc-MIR399a-m1Theobroma cacao (Cacao) 1.1scaffold_3:31602451-31602586-5726.92CGCCAAAGGAGAGUUGCCCUGmiR399MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-5144Theobroma cacao (Cacao) 1.1scaffold_3:31602470-31602564-5726.92CGCCAAAGGAGAGUUGCCCUGmiR399MIRNAShortStack
tcc-b1.1r1-5196Theobroma cacao (Cacao) 1.1scaffold_3:32904020-32904090+4521.25UGAAGUCUUUGGGGAGAGUGAMIRNAShortStack
tcc-b1.1r1-5197Theobroma cacao (Cacao) 1.1scaffold_3:32904217-32904284+198.97GAAGCGCUUGGGGAAGAGUGAMIRNAShortStack
tcc-MIR168-m1Theobroma cacao (Cacao) 1.1scaffold_3:34130754-34130920+544256.94UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-5257Theobroma cacao (Cacao) 1.1scaffold_3:34130766-34130965+545257.41UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
tcc-b1.1r1-5581Theobroma cacao (Cacao) 1.1scaffold_4:13565384-13565531+8640.62UUGUCGCAGGAGCGAUGGCACUMIRNAShortStack
tcc-b1.1r1-5858Theobroma cacao (Cacao) 1.1scaffold_4:21123642-21123848+157.09UUUGUCAUUUUAAACUCACGUGMIRNAShortStack
tcc-MIR166d-m1Theobroma cacao (Cacao) 1.1scaffold_4:30265346-30265464-334157.75UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-6351Theobroma cacao (Cacao) 1.1scaffold_4:30265353-30265444-334157.75UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
tcc-b1.1r1-6356Theobroma cacao (Cacao) 1.1scaffold_4:30293825-30293931-1,060500.66UUGGACAGAGUAAUCACGGUCGMIRNAShortStack
tcc-MIR390a-m1Theobroma cacao (Cacao) 1.1scaffold_5:387450-387578-350165.31AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-6527Theobroma cacao (Cacao) 1.1scaffold_5:387468-387582-350165.31AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
tcc-MIR530a-m1Theobroma cacao (Cacao) 1.1scaffold_5:3339763-3339925+468221.05UGCAUUUGCACCUGCACCUCUmiR530MIRNAmiRBase21-BestBlastHit
tcc-MIR164b-m1Theobroma cacao (Cacao) 1.1scaffold_5:39510128-39510257+6229.28UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-7881Theobroma cacao (Cacao) 1.1scaffold_5:39510147-39510239+6229.28UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
tcc-b1.1r1-7941Theobroma cacao (Cacao) 1.1scaffold_5:40294539-40294690-1,000472.32UCUUCCCUACUCCACCCAUCCCmiR482MIRNAShortStack
tcc-MIR164c-m1Theobroma cacao (Cacao) 1.1scaffold_6:21296375-21296486+52.36UGGAGAAGCAGGGCACGUGCUmiR164MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-8656Theobroma cacao (Cacao) 1.1scaffold_6:21296395-21296468+52.36UGGAGAAGCAGGGCACGUGCUmiR164MIRNAShortStack
tcc-MIR171d-m1Theobroma cacao (Cacao) 1.1scaffold_6:26335408-26335524-2712.75UUGAGCCGUGCCAAUAUCACGmiR171MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-8966Theobroma cacao (Cacao) 1.1scaffold_6:26335424-26335508-2712.75UUGAGCCGUGCCAAUAUCACGmiR171MIRNAShortStack
tcc-MIR171c-m1Theobroma cacao (Cacao) 1.1scaffold_9:7221552-7221674+146.61UUGAGCCGCGCCAAUAUCACUmiR171MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-11093Theobroma cacao (Cacao) 1.1scaffold_9:7221566-7221660+146.61UUGAGCCGCGCCAAUAUCACUmiR171MIRNAShortStack
tcc-MIR396c-m1Theobroma cacao (Cacao) 1.1scaffold_9:7254590-7254741+8,9994,250.40UUCCACAGCUUUCUUGAACUUmiR396MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-11097Theobroma cacao (Cacao) 1.1scaffold_9:7254603-7254833+9,0014,251.34UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
tcc-MIR396b-m1Theobroma cacao (Cacao) 1.1scaffold_9:7261228-7261378-3,6781,737.19UUCCACAGCUUUCUUGAACUmiR396MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-11098Theobroma cacao (Cacao) 1.1scaffold_9:7261235-7261366-3,6781,737.19UUCCACAGCUUUCUUGAACUmiR396MIRNAShortStack
tcc-b1.1r1-11448Theobroma cacao (Cacao) 1.1scaffold_9:18854922-18855067+104.72UUCGCUCUCUUUUCUUUCAUGMIRNAShortStack
tcc-MIR169n-m1Theobroma cacao (Cacao) 1.1scaffold_9:18854925-18855066+104.72UUCGCUCUCUUUUCUUUCAUGMIRNAmiRBase21-BestBlastHit
tcc-MIR390b-m1Theobroma cacao (Cacao) 1.1scaffold_9:41586925-41587044+2511.81AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-12258Theobroma cacao (Cacao) 1.1scaffold_9:41586945-41587024+2511.81AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack