Data from Lunardon et al. (2020)

Genome --search ALL genomes (MAY BE SLOW!)-- Amborella trichopoda (Amborella) build 1 Arabidopsis thaliana (thale cress) build 10 Beta vulgaris (Beet) build 1.2.2 Brachypodium distachyon (Stiff brome) build 1.0 Brassica napus (Rapeseed) build 1 Brassica oleracea var. capitata (Cabbage) build 1.0 Brassica rapa var. pekinensis (Chinese Cabbage) build 1 Capsicum annuum (Pepper) build 1.6 Carica papaya (Papaya) build 0.4 Chenopodium quinoa (Quinoa) build 1.0 Cicer arietinum (Chickpea) build 2.0 Citrullus lanatus (Watermelon) build 1 Citrus clementina (Clementine) build 1 Citrus sinensis (Sweet Orange) build 2 Cucumis sativus (Cucumber) build 2 Cuscuta campestris (Field Dodder) build 0.32 Cuscuta campestris (Field Dodder) build 0.1 Daucus carota (Carrot) build 2.0 Elaeis guineensis (African Oil Palm) build 5.1 Fragaria vesca (Woodland Strawberry) build 2.0 Fragaria x ananassa (Strawberry) build 1.0 Glycine max (Soybean) build 1.0 Gossypium barbadense (Pima Cotton) build 1.0 Gossypium hirsutum (Upland Cotton) build 1.1 Hevea brasiliensis (Rubber Tree) build 0 Hordeum vulgare (Barley) build 1 Lactuca sativa (Lettuce) build 8 Malus x domestica (Apple) build 3.0 Manihot esculenta (Cassava) build 6 Marchantia polymorpha (Common Liverwort) build 3.0 Medicago truncatula (Barrel Medic) build 4.0 Musa acuminata (Banana) build 2 Nicotiana tabacum (Tobacco) build 0 Olea europaea (Olive Tree) build 6 Oryza sativa (Rice) build 1.0 Phaseolus vulgaris (Common Bean) build 1.0 Physcomitrella patens (Spreading Earthmoss) build 3.0 Picea abies (Norway Spruce) build 1.0c Populus trichocarpa (Black Cottonwood) build 3.0 Prunus persica (Peach) build 2.0 Setaria italica (Foxtail Millet) build 2 Solanum lycopersicum (Tomato) build 2.5 Solanum tuberosum (Potato) build 4.04 Sorghum bicolor (Sorghum) build 3.0 Spinacia oleracea (Spinach) build 1 Theobroma cacao (Cacao) build 1.1 Triticum aestivum (Wheat) build 1 Zea mays (Maize) build 4

Sequence (ATGCU, case-insensitive, 15-50 characters long):

Locus type -- ALL types -- MIRNAnearMIRNAsiRNA20siRNA21siRNA22siRNA23siRNA24OtherRNANotExpressed

Name contains:

Family contains:

Enter query DNA sequence below (FASTA format or raw sequence). Limit 1 query at a time.

Genome --search ALL genomes (MAY BE SLOW!)-- Amborella trichopoda (Amborella) build 1 Arabidopsis thaliana (thale cress) build 10 Beta vulgaris (Beet) build 1.2.2 Brachypodium distachyon (Stiff brome) build 1.0 Brassica napus (Rapeseed) build 1 Brassica oleracea var. capitata (Cabbage) build 1.0 Brassica rapa var. pekinensis (Chinese Cabbage) build 1 Capsicum annuum (Pepper) build 1.6 Carica papaya (Papaya) build 0.4 Chenopodium quinoa (Quinoa) build 1.0 Cicer arietinum (Chickpea) build 2.0 Citrullus lanatus (Watermelon) build 1 Citrus clementina (Clementine) build 1 Citrus sinensis (Sweet Orange) build 2 Cucumis sativus (Cucumber) build 2 Cuscuta campestris (Field Dodder) build 0.32 Cuscuta campestris (Field Dodder) build 0.1 Daucus carota (Carrot) build 2.0 Elaeis guineensis (African Oil Palm) build 5.1 Fragaria vesca (Woodland Strawberry) build 2.0 Fragaria x ananassa (Strawberry) build 1.0 Glycine max (Soybean) build 1.0 Gossypium barbadense (Pima Cotton) build 1.0 Gossypium hirsutum (Upland Cotton) build 1.1 Hevea brasiliensis (Rubber Tree) build 0 Hordeum vulgare (Barley) build 1 Lactuca sativa (Lettuce) build 8 Malus x domestica (Apple) build 3.0 Manihot esculenta (Cassava) build 6 Marchantia polymorpha (Common Liverwort) build 3.0 Medicago truncatula (Barrel Medic) build 4.0 Musa acuminata (Banana) build 2 Nicotiana tabacum (Tobacco) build 0 Olea europaea (Olive Tree) build 6 Oryza sativa (Rice) build 1.0 Phaseolus vulgaris (Common Bean) build 1.0 Physcomitrella patens (Spreading Earthmoss) build 3.0 Picea abies (Norway Spruce) build 1.0c Populus trichocarpa (Black Cottonwood) build 3.0 Prunus persica (Peach) build 2.0 Setaria italica (Foxtail Millet) build 2 Solanum lycopersicum (Tomato) build 2.5 Solanum tuberosum (Potato) build 4.04 Sorghum bicolor (Sorghum) build 3.0 Spinacia oleracea (Spinach) build 1 Theobroma cacao (Cacao) build 1.1 Triticum aestivum (Wheat) build 1 Zea mays (Maize) build 4

Dataset type to search:
Whole Genome
Small RNA loci

BLAST type:
blastn :: traditional default settings requiring exact match of 11
blastn-short :: Optimized for queries shorter than 50 bases
megablast :: Optimized for rapidly finding highly similar matches

E-value cutoff:

Gene name contains: