het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-b1.1r1-949Theobroma cacao (Cacao) 1.1scaffold_1:2196272-2196294-62.83UUCCAUCUCUUGCACACUGUmiR2950siRNA20ShortStack
tcc-b1.1r1-1076Theobroma cacao (Cacao) 1.1scaffold_1:4589311-4589568.52.36UUCGAUGUGAGACUUUGUAsiRNA20ShortStack
tcc-b1.1r1-1183Theobroma cacao (Cacao) 1.1scaffold_1:6082900-6083025.52.36AUUAUGACUAUAACGUACGUsiRNA20ShortStack
tcc-b1.1r1-1297Theobroma cacao (Cacao) 1.1scaffold_1:7653542-7653743.73.31AUAUUAUCUUCCCAACAAUCsiRNA20ShortStack
tcc-b1.1r1-1488Theobroma cacao (Cacao) 1.1scaffold_1:10614472-10614671.62.83UUUUCAGAUUCAGAGGCAGUsiRNA20ShortStack
tcc-b1.1r1-1696Theobroma cacao (Cacao) 1.1scaffold_1:13792366-13792586.73.31GCAUUCGUGACUCACCACCUsiRNA20ShortStack
tcc-b1.1r1-2050Theobroma cacao (Cacao) 1.1scaffold_1:28987263-28987329-52.36AUCAUUGACAGAACACGCCGsiRNA20ShortStack
tcc-b1.1r1-2403Theobroma cacao (Cacao) 1.1scaffold_1:35037974-35038019-52.36AACCGUCGACUAUGAAAAUUUUAUsiRNA20ShortStack
tcc-b1.1r1-2410Theobroma cacao (Cacao) 1.1scaffold_1:35111708-35111849+62.83UCAUACUGGUGGGACCCGAUGACAsiRNA20ShortStack
tcc-b1.1r1-2614Theobroma cacao (Cacao) 1.1scaffold_1:38746524-38746729+52.36ACGCGUGGGGUUGACCGGGUUCUsiRNA20ShortStack
tcc-b1.1r1-88Theobroma cacao (Cacao) 1.1scaffold_10r:1312800-1312902-62.83GUGUGGAUAAAGAAUGACGUsiRNA20ShortStack
tcc-b1.1r1-178Theobroma cacao (Cacao) 1.1scaffold_10r:2306316-2306374.62.83AACGUGCUCUCUUAACAACUsiRNA20ShortStack
tcc-b1.1r1-396Theobroma cacao (Cacao) 1.1scaffold_10r:8125807-8125977.73.31GUCGCUGUAUGCAAAGAUGCsiRNA20ShortStack
tcc-b1.1r1-407Theobroma cacao (Cacao) 1.1scaffold_10r:9013862-9014036-52.36GAUUAGAGAGCGGAUGACAGUGAUsiRNA20ShortStack
tcc-b1.1r1-500Theobroma cacao (Cacao) 1.1scaffold_10r:14552858-14553012.62.83AAUUGGAUUAAAGGGUAUUCUUGUsiRNA20ShortStack
tcc-b1.1r1-748Theobroma cacao (Cacao) 1.1scaffold_10r:23757982-23758041.52.36ACGACCCAGAAUUCCCsiRNA20ShortStack
tcc-b1.1r1-12282Theobroma cacao (Cacao) 1.1scaffold_11:978169-978247.52.36AUCAUAUAUCUGUACAAUCCGUsiRNA20ShortStack
tcc-b1.1r1-2825Theobroma cacao (Cacao) 1.1scaffold_2:3918487-3918604.52.36AAUCGAACCGAAUCGAACUGAGUUsiRNA20ShortStack
tcc-b1.1r1-3096Theobroma cacao (Cacao) 1.1scaffold_2:9163883-9164017+52.36CCCCCCUUCCCUCUGCUUCUGCsiRNA20ShortStack
tcc-b1.1r1-3173Theobroma cacao (Cacao) 1.1scaffold_2:10888390-10888465+52.36UUUGGUACGACGAAUAGAGUsiRNA20ShortStack
tcc-b1.1r1-3186Theobroma cacao (Cacao) 1.1scaffold_2:11029862-11030038-62.83CUGGCAGUACGUGACUGACUUGUGUsiRNA20ShortStack
tcc-b1.1r1-3342Theobroma cacao (Cacao) 1.1scaffold_2:17576408-17576613.52.36AAAAUGUUGGAUGAAAUUUUUGsiRNA20ShortStack
tcc-b1.1r1-3423Theobroma cacao (Cacao) 1.1scaffold_2:23176947-23177015+52.36GAUGUCCGACCUAACUCGCCUAUsiRNA20ShortStack
tcc-b1.1r1-3436Theobroma cacao (Cacao) 1.1scaffold_2:24944222-24944330-52.36AUCGGGCCCGGGACAACCGCUGCGsiRNA20ShortStack
tcc-b1.1r1-3541Theobroma cacao (Cacao) 1.1scaffold_2:31056036-31056269.83.78GUACUGUGCCGGAAAUAAAAAUUsiRNA20ShortStack
tcc-b1.1r1-3563Theobroma cacao (Cacao) 1.1scaffold_2:31909807-31909843-52.36UUGACAUGUCACUAACGUAGAAUGUsiRNA20ShortStack
tcc-b1.1r1-3681Theobroma cacao (Cacao) 1.1scaffold_2:34461416-34461448-73.31UGAUGUGUUUUUCCGACUGUUGAUsiRNA20ShortStack
tcc-b1.1r1-3742Theobroma cacao (Cacao) 1.1scaffold_2:35937913-35937982+52.36UGUCUGCUACUCUUGACAGUsiRNA20ShortStack
tcc-b1.1r1-3854Theobroma cacao (Cacao) 1.1scaffold_2:37944743-37944833.52.36AAAAGAGUGUUGGGAUGACUsiRNA20ShortStack
tcc-b1.1r1-4075Theobroma cacao (Cacao) 1.1scaffold_3:84894-85065.52.36AUCAUCCACCUCACCAAGGUsiRNA20ShortStack
tcc-b1.1r1-4205Theobroma cacao (Cacao) 1.1scaffold_3:2111295-2111339+52.36AAAGUGAGCGAAUGGAUAGAAUGGsiRNA20ShortStack
tcc-b1.1r1-4221Theobroma cacao (Cacao) 1.1scaffold_3:2319893-2319915+13563.76AUUGGACUGAAGGGAGCUCCmiR319siRNA20ShortStack
tcc-b1.1r1-4745Theobroma cacao (Cacao) 1.1scaffold_3:23580980-23581023.52.36UAAACAUAUCAGGUCGUUAUUCAUsiRNA20ShortStack
tcc-b1.1r1-5142Theobroma cacao (Cacao) 1.1scaffold_3:31558383-31558503.73.31GAUAUCUGUGACAUACUCGCsiRNA20ShortStack
tcc-b1.1r1-5190Theobroma cacao (Cacao) 1.1scaffold_3:32654915-32655021-5124.09UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
tcc-b1.1r1-5218Theobroma cacao (Cacao) 1.1scaffold_3:33239626-33239817+125.67UAUGGUCAUUUUUCUUGUAGsiRNA20ShortStack
tcc-b1.1r1-12370Theobroma cacao (Cacao) 1.1scaffold_37:56185-56280+62.83AGACGAUUUGUGGGAUGUGCACAsiRNA20ShortStack
tcc-b1.1r1-5465Theobroma cacao (Cacao) 1.1scaffold_4:4185681-4185710.52.36GACGAGUUUCCGUGGACUsiRNA20ShortStack
tcc-b1.1r1-5618Theobroma cacao (Cacao) 1.1scaffold_4:15449786-15449855.73.31AUCGAGUUGGUUGUGGUCGCCUsiRNA20ShortStack
tcc-b1.1r1-5924Theobroma cacao (Cacao) 1.1scaffold_4:22282848-22283032-62.83CAGAUCUGGCCGUGGAGUGCsiRNA20ShortStack
tcc-b1.1r1-5984Theobroma cacao (Cacao) 1.1scaffold_4:23051086-23051268.52.36CAGAACGGGAGGAUUAUUAUUCGCsiRNA20ShortStack
tcc-b1.1r1-6105Theobroma cacao (Cacao) 1.1scaffold_4:25791868-25791919.83.78ACGGUUCAAACUCACAGAUGsiRNA20ShortStack
tcc-b1.1r1-6260Theobroma cacao (Cacao) 1.1scaffold_4:28651830-28651990.73.31AUCGCGUGGUGCUGAUGUAUCAUGsiRNA20ShortStack
tcc-b1.1r1-6342Theobroma cacao (Cacao) 1.1scaffold_4:30005357-30005414-62.83CCAAGUCUCUGUUUUCAUUUsiRNA20ShortStack
tcc-b1.1r1-6535Theobroma cacao (Cacao) 1.1scaffold_5:540578-540740.52.36AUAGCAUAUGUGAGUGGUAGAAGCsiRNA20ShortStack
tcc-b1.1r1-6744Theobroma cacao (Cacao) 1.1scaffold_5:3954327-3954533.83.78AAUUCUUCGAUUCGGACAAUCAGAsiRNA20ShortStack
tcc-b1.1r1-6859Theobroma cacao (Cacao) 1.1scaffold_5:6363486-6363594.52.36AGUUGGUAGAGCUCGsiRNA20ShortStack
tcc-b1.1r1-6938Theobroma cacao (Cacao) 1.1scaffold_5:10289500-10289590+52.36ACGUGGCUUGGAUUUCAACUsiRNA20ShortStack
tcc-b1.1r1-7092Theobroma cacao (Cacao) 1.1scaffold_5:19523600-19523707+52.36UAACCGAACUAAGUGAAAUUsiRNA20ShortStack
tcc-b1.1r1-7111Theobroma cacao (Cacao) 1.1scaffold_5:21995578-21995643.52.36UUAUACUUUUAUUCUGGAUCsiRNA20ShortStack
tcc-b1.1r1-7278Theobroma cacao (Cacao) 1.1scaffold_5:27873592-27873703+52.36CUCGACGUUGGCUGAGUUCCAGCUsiRNA20ShortStack
tcc-b1.1r1-7318Theobroma cacao (Cacao) 1.1scaffold_5:28864881-28864966-52.36AUUCAGACUGUGCCAUACUAUCAAsiRNA20ShortStack
tcc-b1.1r1-7438Theobroma cacao (Cacao) 1.1scaffold_5:31207014-31207183.3114.64GAGCCGGUCGCCGGAAAGGCsiRNA20ShortStack
tcc-b1.1r1-7457Theobroma cacao (Cacao) 1.1scaffold_5:31520842-31521011.52.36AUUCUAUUCCAUUGUCAUGAsiRNA20ShortStack
tcc-b1.1r1-7458Theobroma cacao (Cacao) 1.1scaffold_5:31521220-31521385-52.36AUAGUCGACUACCCUCUsiRNA20ShortStack
tcc-b1.1r1-7652Theobroma cacao (Cacao) 1.1scaffold_5:35017527-35017590+52.36UGGAAUUCGUGACAUUsiRNA20ShortStack
tcc-b1.1r1-7823Theobroma cacao (Cacao) 1.1scaffold_5:38081439-38081543.52.36AAAUAAACAGAUAGAUAUGCAsiRNA20ShortStack
tcc-b1.1r1-8369Theobroma cacao (Cacao) 1.1scaffold_6:12898578-12898619.52.36CAUCGGGUCUGUGACAAUCGCCGCsiRNA20ShortStack
tcc-b1.1r1-8447Theobroma cacao (Cacao) 1.1scaffold_6:16742496-16742591-52.36GGGUUUAGGGCUUAGGGUUUAGGGsiRNA20ShortStack
tcc-b1.1r1-8527Theobroma cacao (Cacao) 1.1scaffold_6:19033627-19033773.62.83GCAAUUUUGGGAUCCGUCAUUsiRNA20ShortStack
tcc-b1.1r1-8664Theobroma cacao (Cacao) 1.1scaffold_6:21405342-21405367+62.83AGGUACGGAUCUAAACAUAUGAGUsiRNA20ShortStack
tcc-b1.1r1-8764Theobroma cacao (Cacao) 1.1scaffold_6:23170715-23170802.52.36AUAUACUAUAGAUUCAGAUUsiRNA20ShortStack
tcc-b1.1r1-8876Theobroma cacao (Cacao) 1.1scaffold_6:25040236-25040311-52.36GAUUUGUAGGCCAAUUGUACsiRNA20ShortStack
tcc-b1.1r1-9112Theobroma cacao (Cacao) 1.1scaffold_7:1608444-1608551-52.36CUGCUAGGAAGCUCACGAGUsiRNA20ShortStack
tcc-b1.1r1-9299Theobroma cacao (Cacao) 1.1scaffold_7:5172731-5172849.94.25CUGUCAUUGGAUCAGGAGCUsiRNA20ShortStack
tcc-b1.1r1-9329Theobroma cacao (Cacao) 1.1scaffold_7:5473156-5473267.62.83CCACGCCACCAGAUGAAUCAsiRNA20ShortStack
tcc-b1.1r1-9480Theobroma cacao (Cacao) 1.1scaffold_7:8652250-8652411.52.36AUAAAUAAUGAUUGGACCsiRNA20ShortStack
tcc-b1.1r1-9487Theobroma cacao (Cacao) 1.1scaffold_7:8824433-8824489+62.83AUGAGUUUUCUGCCUUUUCUsiRNA20ShortStack
tcc-b1.1r1-9611Theobroma cacao (Cacao) 1.1scaffold_7:11089004-11089164-52.36UCAUAUGUGGAGGUAUGACUsiRNA20ShortStack
tcc-b1.1r1-9622Theobroma cacao (Cacao) 1.1scaffold_7:11249769-11249854.52.36AAGAUUCGAACUAGUCAAAAUsiRNA20ShortStack
tcc-b1.1r1-9769Theobroma cacao (Cacao) 1.1scaffold_7:19578797-19578862-52.36CACAUUUAGAUCUCUCUCCUCAsiRNA20ShortStack
tcc-b1.1r1-9827Theobroma cacao (Cacao) 1.1scaffold_7:21421060-21421182.62.83UUCGAGUUCGUGACAACCGCsiRNA20ShortStack
tcc-b1.1r1-9867Theobroma cacao (Cacao) 1.1scaffold_7:22503583-22503685.62.83UUUUAGUCGAAAUAGGUGUUsiRNA20ShortStack
tcc-b1.1r1-10152Theobroma cacao (Cacao) 1.1scaffold_8:4726036-4726224.94.25GUUAGAUCUUGAGUAAUUCUUUsiRNA20ShortStack
tcc-b1.1r1-10231Theobroma cacao (Cacao) 1.1scaffold_8:6273886-6273976.62.83AACGAAAAAACUUGACGAACAUACUsiRNA20ShortStack
tcc-b1.1r1-10244Theobroma cacao (Cacao) 1.1scaffold_8:6521899-6522102.62.83ACACAUCAGAAACCUGCAUAsiRNA20ShortStack
tcc-b1.1r1-10341Theobroma cacao (Cacao) 1.1scaffold_8:8994439-8994519.62.83UUGGUCUACGAAUUUUAAAAUsiRNA20ShortStack
tcc-b1.1r1-10474Theobroma cacao (Cacao) 1.1scaffold_8:13089513-13089695-62.83UGUUUAUUGGCCAUGUAGAUUsiRNA20ShortStack
tcc-b1.1r1-10740Theobroma cacao (Cacao) 1.1scaffold_9:416267-416407+52.36UUGACAACAAUGUGAAGCUUsiRNA20ShortStack
tcc-b1.1r1-10881Theobroma cacao (Cacao) 1.1scaffold_9:3373441-3373561-52.36ACGACGUAGAUUUAUGGAGAGAAUsiRNA20ShortStack
tcc-b1.1r1-10997Theobroma cacao (Cacao) 1.1scaffold_9:5262830-5262994.83.78GGGACUUUUCGAGAAAGCUUGsiRNA20ShortStack
tcc-b1.1r1-10998Theobroma cacao (Cacao) 1.1scaffold_9:5263329-5263444.62.83UACCGAUGAUGGGAUAUUCUUACsiRNA20ShortStack
tcc-b1.1r1-11137Theobroma cacao (Cacao) 1.1scaffold_9:7830020-7830212.52.36UAAGGCUUUGUGGUAAAACCsiRNA20ShortStack
tcc-b1.1r1-11203Theobroma cacao (Cacao) 1.1scaffold_9:8840708-8840902-52.36UGAACAUGACCGACAUAAGAAGUsiRNA20ShortStack
tcc-b1.1r1-11323Theobroma cacao (Cacao) 1.1scaffold_9:13600434-13600478-5827.39UUUCUUGACUUGUAUCUGAGsiRNA20ShortStack
tcc-b1.1r1-11472Theobroma cacao (Cacao) 1.1scaffold_9:19561368-19561569.83.78UCAACUUUAGAUUCGGUGGCsiRNA20ShortStack
tcc-b1.1r1-11554Theobroma cacao (Cacao) 1.1scaffold_9:23849517-23849574-52.36GAGUGACUAUAAACGAACUsiRNA20ShortStack
tcc-b1.1r1-11601Theobroma cacao (Cacao) 1.1scaffold_9:26831555-26831757-52.36GACGUGAUCAAACAAUGACAsiRNA20ShortStack
tcc-b1.1r1-11681Theobroma cacao (Cacao) 1.1scaffold_9:30475274-30475427+52.36AAUUGCAGUUGAACUGGUsiRNA20ShortStack
tcc-b1.1r1-11754Theobroma cacao (Cacao) 1.1scaffold_9:32655370-32655433-146.61AGCCGAUUAGAGAGAUCUCUUsiRNA20ShortStack
tcc-b1.1r1-12098Theobroma cacao (Cacao) 1.1scaffold_9:38696863-38696965.52.36GAUGUGGAGCAUGACCsiRNA20ShortStack
tcc-b1.1r1-12418Theobroma cacao (Cacao) 1.1scaffold_98:22973-23088+52.36CGAUUAUCUCGGGAAACAUGsiRNA20ShortStack