het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-b1.1r1-1110Theobroma cacao (Cacao) 1.1scaffold_1:5037235-5037284+52.36ACGUGUGGAUCCGAGAACUCAACCnearMIRNAShortStack
tcc-b1.1r1-1333Theobroma cacao (Cacao) 1.1scaffold_1:8316422-8316508-15372.27UCGGACCAGGCUUCAUUCCUmiR166nearMIRNAShortStack
tcc-b1.1r1-1407Theobroma cacao (Cacao) 1.1scaffold_1:9463568-9463597-125.67AACGUGUCAGAUCUGAAUAAUAUAnearMIRNAShortStack
tcc-b1.1r1-1796Theobroma cacao (Cacao) 1.1scaffold_1:16061521-16061548+146.61GUCUACUAAAUGAGAUCCAUCAGAnearMIRNAShortStack
tcc-b1.1r1-1831Theobroma cacao (Cacao) 1.1scaffold_1:17231640-17231674-83.78ACAUGGACUAAUAGAUGGUGACGUnearMIRNAShortStack
tcc-b1.1r1-2234Theobroma cacao (Cacao) 1.1scaffold_1:32452909-32453027-136.14AUCUAUUGUCUGUAAUGUGAUUGUnearMIRNAShortStack
tcc-b1.1r1-2440Theobroma cacao (Cacao) 1.1scaffold_1:35634121-35634183-4621.73CUUGGAUUGAUGGGAGCUCCmiR159nearMIRNAShortStack
tcc-b1.1r1-19Theobroma cacao (Cacao) 1.1scaffold_10r:273691-273712-73.31UCUCUAGAAGAAUUGAACGUGnearMIRNAShortStack
tcc-MIR393a-m1Theobroma cacao (Cacao) 1.1scaffold_10r:1493623-1493740-188.50UCCAAAGGGAUCGCAUUGAUCmiR393nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-96Theobroma cacao (Cacao) 1.1scaffold_10r:1493641-1493739-188.50UCCAAAGGGAUCGCAUUGAUCmiR393nearMIRNAShortStack
tcc-b1.1r1-605Theobroma cacao (Cacao) 1.1scaffold_10r:18788455-18788490-136.14AUUAUGAGUCUAGUUUCCCUUnearMIRNAShortStack
tcc-b1.1r1-606Theobroma cacao (Cacao) 1.1scaffold_10r:18797314-18797336-52.36GGGAAACUAGACUCAUAAUCUnearMIRNAShortStack
tcc-b1.1r1-607Theobroma cacao (Cacao) 1.1scaffold_10r:18797659-18797680-178.03GGGGAACUGGACUCAUAAUCCnearMIRNAShortStack
tcc-b1.1r1-613Theobroma cacao (Cacao) 1.1scaffold_10r:18826385-18826405-125.67GGGGAACUGGACUCAUAAUCUnearMIRNAShortStack
tcc-b1.1r1-615Theobroma cacao (Cacao) 1.1scaffold_10r:18834589-18834609-94.25GGGGAACUGGACUCAUAAUCCnearMIRNAShortStack
tcc-b1.1r1-837Theobroma cacao (Cacao) 1.1scaffold_10r:25272690-25272823+506238.99UGGACUGAAGGGAGCUCCUUCmiR319nearMIRNAShortStack
tcc-b1.1r1-2717Theobroma cacao (Cacao) 1.1scaffold_2:1993052-1993087-8,6724,095.95UCGGACCAGGCUUCAUUCCCUmiR166nearMIRNAShortStack
tcc-b1.1r1-2718Theobroma cacao (Cacao) 1.1scaffold_2:1993166-1993201-9846.29GGAAUGUUGUUUGGCUCGAGGmiR166nearMIRNAShortStack
tcc-MIR396d-m1Theobroma cacao (Cacao) 1.1scaffold_2:8719597-8719778-522246.55UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-3072Theobroma cacao (Cacao) 1.1scaffold_2:8719730-8719760-505238.52UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAShortStack
tcc-b1.1r1-3384Theobroma cacao (Cacao) 1.1scaffold_2:18413405-18413568+73.31AGAAUGAUCUUAGUUGACUAACUGnearMIRNAShortStack
tcc-b1.1r1-3480Theobroma cacao (Cacao) 1.1scaffold_2:28253794-28253817+52.36AAUUUGUUUAAUGAAGUUGAGCCUnearMIRNAShortStack
tcc-b1.1r1-3938Theobroma cacao (Cacao) 1.1scaffold_2:39881950-39882061-52.36UGAUGGAAAAUAAAGAUGAUnearMIRNAShortStack
tcc-b1.1r1-4156Theobroma cacao (Cacao) 1.1scaffold_3:908769-908792+83.78UGAAUUUAGUCAUGAAGGUGAACUnearMIRNAShortStack
tcc-b1.1r1-4343Theobroma cacao (Cacao) 1.1scaffold_3:6401618-6401779+62.83AUGGAUGUUAUUCUUGGUGACAGUnearMIRNAShortStack
tcc-b1.1r1-4400Theobroma cacao (Cacao) 1.1scaffold_3:10606684-10606794-83.78AAGGAAUAUCUGUUUUACUGUAGCnearMIRNAShortStack
tcc-b1.1r1-4487Theobroma cacao (Cacao) 1.1scaffold_3:17642555-17642575+62.83CCGGACCAGGCUUCAUUCCCAmiR166nearMIRNAShortStack
tcc-b1.1r1-4605Theobroma cacao (Cacao) 1.1scaffold_3:20749932-20749981-52.36AGGGAAAUCUGACUGUAGAGGAGGnearMIRNAShortStack
tcc-b1.1r1-4890Theobroma cacao (Cacao) 1.1scaffold_3:26617402-26617423-188.50UCCAAAGGGAUCGCAUUGAUUUmiR393nearMIRNAShortStack
tcc-b1.1r1-4976Theobroma cacao (Cacao) 1.1scaffold_3:28184062-28184085+5927.87UUGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
tcc-b1.1r1-5002Theobroma cacao (Cacao) 1.1scaffold_3:28905740-28905770-733346.21GGAAUGUUGUCUGGCUCGAGGmiR166nearMIRNAShortStack
tcc-b1.1r1-5047Theobroma cacao (Cacao) 1.1scaffold_3:29538999-29539090+73.31UUCAUUUAAAGUUUAGCAUGUUCUnearMIRNAShortStack
tcc-MIR171g-m1Theobroma cacao (Cacao) 1.1scaffold_4:2531715-2531829+125.67UUGAGCCGUGCCAAUAUCACAmiR171nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-5582Theobroma cacao (Cacao) 1.1scaffold_4:13568569-13568593+3717.48CUGUCGGAGGAGAGAUAGCGCCnearMIRNAShortStack
tcc-b1.1r1-5800Theobroma cacao (Cacao) 1.1scaffold_4:19571483-19571573+62.83AUAGACGUAACAAUGACAAGUAGUnearMIRNAShortStack
tcc-MIR398a-m1Theobroma cacao (Cacao) 1.1scaffold_4:26691422-26691546+3717.48UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-6149Theobroma cacao (Cacao) 1.1scaffold_4:26691440-26691526+3717.48UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAShortStack
tcc-b1.1r1-6269Theobroma cacao (Cacao) 1.1scaffold_4:28885451-28885563+94.25AAAGUUGCAUUUUGUCUGAAUnearMIRNAShortStack
tcc-MIR403b-m1Theobroma cacao (Cacao) 1.1scaffold_4:32849335-32849457-14970.38UUAGAUUCACGCACAAACUCGmiR403nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-6482Theobroma cacao (Cacao) 1.1scaffold_4:32849341-32849507-15171.32UUAGAUUCACGCACAAACUCGmiR403nearMIRNAShortStack
tcc-MIR827-m1Theobroma cacao (Cacao) 1.1scaffold_5:101420-101567+104.72UUUGUUGAUGGUCAUCUUGUCmiR827nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-6508Theobroma cacao (Cacao) 1.1scaffold_5:101442-101547+104.72UUUGUUGAUGGUCAUCUUGUCmiR827nearMIRNAShortStack
tcc-b1.1r1-6518Theobroma cacao (Cacao) 1.1scaffold_5:228313-228357-253119.50UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
tcc-MIR172d-m1Theobroma cacao (Cacao) 1.1scaffold_5:3119451-3119579-420198.37AGAAUCCUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-6701Theobroma cacao (Cacao) 1.1scaffold_5:3119469-3119493-420198.37AGAAUCCUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
tcc-b1.1r1-6713Theobroma cacao (Cacao) 1.1scaffold_5:3339781-3339805+455214.91UGCAUUUGCACCUGCACCUCUmiR530nearMIRNAShortStack
tcc-b1.1r1-6881Theobroma cacao (Cacao) 1.1scaffold_5:7206070-7206096+94.25UCCAAGUCGGACCCGUGCCUUnearMIRNAShortStack
tcc-MIR166c-m1Theobroma cacao (Cacao) 1.1scaffold_5:35344431-35344571+239112.88UCGGACCAGGCUUCAUUCCUmiR166nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-7686Theobroma cacao (Cacao) 1.1scaffold_5:35344455-35344555+239112.88UCGGACCAGGCUUCAUUCCUmiR166nearMIRNAShortStack
tcc-b1.1r1-8279Theobroma cacao (Cacao) 1.1scaffold_6:7679104-7679130-125.67ACAGCUGUUAGACCUAAUGCCAACnearMIRNAShortStack
tcc-b1.1r1-8867Theobroma cacao (Cacao) 1.1scaffold_6:24939684-24939706-73.31UAUGUGGCUUUGCAUGAUACUnearMIRNAShortStack
tcc-b1.1r1-9056Theobroma cacao (Cacao) 1.1scaffold_7:572339-572514+2210.39ACUUGUCUUUGCCCUUCUCUGAnearMIRNAShortStack
tcc-b1.1r1-9058Theobroma cacao (Cacao) 1.1scaffold_7:575935-576092-8138.26UCUUUAACAUGUCUUUUGCCUUnearMIRNAShortStack
tcc-b1.1r1-9234Theobroma cacao (Cacao) 1.1scaffold_7:4002594-4002645-52.36AACGACCCAAAUCUAACUACUAGCnearMIRNAShortStack
tcc-b1.1r1-9758Theobroma cacao (Cacao) 1.1scaffold_7:19178311-19178524-967456.73UUCACUUCUCUGAUUUGGGCGAnearMIRNAShortStack
tcc-b1.1r1-9791Theobroma cacao (Cacao) 1.1scaffold_7:20174941-20174967-3416.06UCUGCUAUCAGCUCUGCUUGCnearMIRNAShortStack
tcc-b1.1r1-9804Theobroma cacao (Cacao) 1.1scaffold_7:20623958-20624174+276130.36AAAUGAACAUCAUGGAACAGUnearMIRNAShortStack
tcc-MIR171e-m1Theobroma cacao (Cacao) 1.1scaffold_8:2406877-2407037-16778.88CUACGAUGUUGGCUCGGUUCAmiR171nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-10052Theobroma cacao (Cacao) 1.1scaffold_8:2406995-2407021-16075.57CUACGAUGUUGGCUCGGUUCAmiR171nearMIRNAShortStack
tcc-b1.1r1-10068Theobroma cacao (Cacao) 1.1scaffold_8:2700555-2700618-62.83AACACGGUUAAGACAUGAACGAUUnearMIRNAShortStack
tcc-b1.1r1-10703Theobroma cacao (Cacao) 1.1scaffold_8:20675823-20675964+125.67UGGCUUUUUUGACAUGGUGAAAUUnearMIRNAShortStack
tcc-MIR396a-m1Theobroma cacao (Cacao) 1.1scaffold_9:1215330-1215475+17281.24UUCCACAGCUUUCUUGAACUmiR396nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-10770Theobroma cacao (Cacao) 1.1scaffold_9:1215350-1215467+17281.24UUCCACAGCUUUCUUGAACUmiR396nearMIRNAShortStack
tcc-b1.1r1-10947Theobroma cacao (Cacao) 1.1scaffold_9:4348274-4348359-8841.56CUUUUAACCGACUUUUGCACUnearMIRNAShortStack
tcc-MIR319-m1Theobroma cacao (Cacao) 1.1scaffold_9:8935155-8935287+10047.23UUUGGAUUGAAGGGAGCUCCUmiR159nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-11209Theobroma cacao (Cacao) 1.1scaffold_9:8935247-8935270+10047.23UUUGGAUUGAAGGGAGCUCCUmiR159nearMIRNAShortStack
tcc-b1.1r1-11371Theobroma cacao (Cacao) 1.1scaffold_9:15947714-15947734+52.36UGUGUUCCUACUGCACUUUGCnearMIRNAShortStack
tcc-b1.1r1-11832Theobroma cacao (Cacao) 1.1scaffold_9:34010113-34010147+4219.84UUGCCCACGUGACAUAUGACUnearMIRNAShortStack
tcc-MIR160a-m1Theobroma cacao (Cacao) 1.1scaffold_9:34637500-34637621-6028.34UGCCUGGCUCCCUGAAUGCCAmiR160nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-11861Theobroma cacao (Cacao) 1.1scaffold_9:34637516-34637618-6028.34UGCCUGGCUCCCUGAAUGCCAmiR160nearMIRNAShortStack
tcc-MIR530b-m1Theobroma cacao (Cacao) 1.1scaffold_9:41222141-41222318+178.03UGCAUUUGCACCUGCACCUUCmiR530nearMIRNAmiRBase21-BestBlastHit
tcc-b1.1r1-12245Theobroma cacao (Cacao) 1.1scaffold_9:41222161-41222181+178.03UGCAUUUGCACCUGCACCUUCmiR530nearMIRNAShortStack