Lunardon et al. 2020

Genome and annotations summary

Version v0 of Hevea brasiliensis cv. Reyan7-33-97 from NCBI

Small RNA Loci

Click links below to show sub-sets of annotations

Small RNA-seq data

Reference Set

accession

aligned reads

unaligned reads

source db

is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.

tissue

ecotype / cultivar

genotype

replicate id Alignments that are biological replicates have the same replicate ids

refset id If set, the alignment is part of the indicated reference set

description

rubber_tree_all_reference_set

114,678,142

18,166,987

none

mixed

refset1

merge of 5 libraries - reference set 1

Invidiual alignments (5)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
SRR2386003	8,529,837	2,407,104	SRA	0	latex	Reyan 7-33-97	wt	A	1	latex -- control conditions
SRR401320	37,165,624	4,416,364	SRA	0	leaf	PB217	wt	B	1	leaf (mature) -- control conditions
SRR401321	18,082,013	3,756,362	SRA	0	leaf	PB217	wt	C	1	leaf (young) -- control conditions
SRR401322	31,749,013	3,755,280	SRA	0	leaf	PB260	wt	D	1	leaf (mature) -- control conditions
SRR401323	19,151,655	3,831,877	SRA	0	leaf	PB260	wt	E	1	leaf (young) -- control conditions

	ShortStack	miRBase21-BestBlastHit
MIRNA	47	16
nearMIRNA	21	1
siRNA20	9	1
siRNA21	479	5
siRNA22	17	0
siRNA23	7	0
siRNA24	3,481	3
OtherRNA	2,438	11
NotExpressed	0	3

Data from Lunardon et al. (2020)

Genome and annotations summary

Hevea brasiliensis (Rubber Tree) genome build 0 (hbr-b0)

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BLAST search

Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (5)