Data from Lunardon et al. (2020)

Annotations viewer

Genome

Hevea brasiliensis (Rubber Tree) genome build 0 (hbr-b0)

Version v0 of Hevea brasiliensis cv. Reyan7-33-97 from NCBI

Locus type

Warning: Undefined array key "ann_source" in /data/www/html/multiannotations.php on line 46

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
hbr-b0r1-83	Hevea brasiliensis (Rubber Tree) 0	scaffold0005:4366235-4366384	+	5,207	39.20	ACUCUCCCUGAAGGCUUCAGC		MIRNA	ShortStack
hbr-b0r1-89	Hevea brasiliensis (Rubber Tree) 0	scaffold0006:4434625-4434734	-	42,396	319.14	GUUCAAGAAAGCUGUGGGAGA	miR396	MIRNA	ShortStack
hbr-MIR166b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0029:2847818-2847937	+	36,585	275.40	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-469	Hevea brasiliensis (Rubber Tree) 0	scaffold0029:2847831-2847919	+	36,584	275.39	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	ShortStack
hbr-MIR408a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0056:2268689-2268816	+	13,801	103.89	UGCACUGCCUCUUCCCUGGC	miR408	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-839	Hevea brasiliensis (Rubber Tree) 0	scaffold0059:2351725-2351818	-	10,814	81.40	CUGAAGUGUUUGGGGGAACUC	miR395	MIRNA	ShortStack
hbr-MIR2118-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0065:716643-716782	+	8,368	62.99	GUUCCCAUGCCACCCAUUUCUA	miR2118	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-1199	Hevea brasiliensis (Rubber Tree) 0	scaffold0103:935-1066	+	89,525	673.91	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	ShortStack
hbr-b0r1-1230	Hevea brasiliensis (Rubber Tree) 0	scaffold0105:556016-556138	+	24,926	187.63	UAGAGCCAAGAAUGACUUGCCGGC	miR169	MIRNA	ShortStack
hbr-b0r1-1231	Hevea brasiliensis (Rubber Tree) 0	scaffold0105:560439-560552	+	16,086	121.09	UAGAGCCAAGAAUGACUUGCGGC		MIRNA	ShortStack
hbr-MIR319-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0105:1229323-1229543	-	785	5.91	UUGGACUGAAGGGAGCUCCC	miR319	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-1236	Hevea brasiliensis (Rubber Tree) 0	scaffold0105:1524538-1524748	+	318	2.39	ACUCUCCCUCAAAGACUUCCAG		MIRNA	ShortStack
hbr-b0r1-1305	Hevea brasiliensis (Rubber Tree) 0	scaffold0114:469252-469346	+	123,226	927.59	UGAAGCUGCCAGCAUGAUCUGA	miR167	MIRNA	ShortStack
hbr-b0r1-1431	Hevea brasiliensis (Rubber Tree) 0	scaffold0135:1440723-1440936	+	776,017	5,841.52	UUUGGAUUGAAGGGAGCUCUA	miR159	MIRNA	ShortStack
hbr-b0r1-1528	Hevea brasiliensis (Rubber Tree) 0	scaffold0148:1000237-1000337	+	2,130	16.03	UCCAAAGGGAUCGCAUUGAUU	miR393	MIRNA	ShortStack
hbr-b0r1-1591	Hevea brasiliensis (Rubber Tree) 0	scaffold0159:1127840-1128133	-	120,994	910.79	GGAAUGGGCGGUUUGGGAAAG	miR482	MIRNA	ShortStack
hbr-MIR482b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0159:1127895-1128044	-	120,968	910.59	GGAAUGGGCGGUUUGGGAAAG	miR482	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-1865	Hevea brasiliensis (Rubber Tree) 0	scaffold0198:106050-106149	-	535	4.03	AGCCAAGAGUGAUUUGCCUAG		MIRNA	ShortStack
hbr-b0r1-1876	Hevea brasiliensis (Rubber Tree) 0	scaffold0198:680647-680804	-	11,488	86.48	UUGGCAUUCUGUCCACCUCC	miR394	MIRNA	ShortStack
hbr-MIR408b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0214:972346-972465	+	2,955	22.24	UGCACUGCCUCUUCCCUGGC	miR408	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-1998	Hevea brasiliensis (Rubber Tree) 0	scaffold0222:1466194-1466339	-	18,337	138.03	UCGCUUGGUGCAGGUCGGGAA	miR168	MIRNA	ShortStack
hbr-b0r1-2017	Hevea brasiliensis (Rubber Tree) 0	scaffold0227:698621-698713	-	18,922	142.44	UCGAUAAACCUCUGCAUCCAG	miR162	MIRNA	ShortStack
hbr-b0r1-2077	Hevea brasiliensis (Rubber Tree) 0	scaffold0239:954862-955015	-	126,500	952.24	UGAAGCUGCCAGCAUGAUCUGA	miR167	MIRNA	ShortStack
hbr-b0r1-2311	Hevea brasiliensis (Rubber Tree) 0	scaffold0287:506821-506906	+	1,991	14.99	GCAUGAGGGGAGUCACGCAGG	miR160	MIRNA	ShortStack
hbr-b0r1-2312	Hevea brasiliensis (Rubber Tree) 0	scaffold0287:515752-515836	+	2,060	15.51	GCAUGAGGGGAGUCACGCAGG	miR160	MIRNA	ShortStack
hbr-b0r1-2314	Hevea brasiliensis (Rubber Tree) 0	scaffold0289:570318-570404	-	3,169	23.86	UGCCUGGCUCCCUGAAUGCCA	miR160	MIRNA	ShortStack
hbr-b0r1-2528	Hevea brasiliensis (Rubber Tree) 0	scaffold0337:1064396-1064530	+	2,449	18.44	UGAAGAUAAGAGUCUGUUUGA	miR169	MIRNA	ShortStack
hbr-b0r1-2538	Hevea brasiliensis (Rubber Tree) 0	scaffold0340:228792-228931	+	2,883	21.70	AUUUUAGGAAGGGAACGAACA		MIRNA	ShortStack
hbr-b0r1-2591	Hevea brasiliensis (Rubber Tree) 0	scaffold0345:1007087-1007228	+	17,304	130.26	AAUGGGUAGGUGGGUAAGAUG		MIRNA	ShortStack
hbr-b0r1-3378	Hevea brasiliensis (Rubber Tree) 0	scaffold0486:876215-876383	+	50,154	377.54	UUCCACAGCUUUCUUGAACUU	miR396	MIRNA	ShortStack
hbr-MIR396a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0486:876290-876375	+	50,146	377.48	UUCCACAGCUUUCUUGAACUU	miR396	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-3398	Hevea brasiliensis (Rubber Tree) 0	scaffold0491:624374-624451	-	443	3.34	UGUUGGAAUGGCUCAAUCAAA	miR171	MIRNA	ShortStack
hbr-b0r1-3521	Hevea brasiliensis (Rubber Tree) 0	scaffold0539:393705-393830	+	18,799	141.51	UUAGAUUCACGCACAAACUCG	miR403	MIRNA	ShortStack
hbr-b0r1-3756	Hevea brasiliensis (Rubber Tree) 0	scaffold0585:62645-62781	-	1,667	12.55	UGGAGAAGCAGGGCACGUGCA	miR164	MIRNA	ShortStack
hbr-b0r1-3818	Hevea brasiliensis (Rubber Tree) 0	scaffold0607:442495-442614	-	1,947	14.66	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	ShortStack
hbr-b0r1-3841	Hevea brasiliensis (Rubber Tree) 0	scaffold0617:4823-4892	-	1,479	11.13	UGAAGCUGCCAGCUUGAUCUU	miR167	MIRNA	ShortStack
hbr-b0r1-3936	Hevea brasiliensis (Rubber Tree) 0	scaffold0633:157818-157901	-	6,225	46.86	UGACAACGAGAGAGAGCACGU	miR535	MIRNA	ShortStack
hbr-b0r1-3937	Hevea brasiliensis (Rubber Tree) 0	scaffold0633:214676-214758	-	1,599	12.04	UGACAACGAGAGAGAGCACGU	miR535	MIRNA	ShortStack
hbr-b0r1-3996	Hevea brasiliensis (Rubber Tree) 0	scaffold0647:20702-20816	+	5,155	38.81	AAGCUCAGGAGGGAUAGCGCC	miR390	MIRNA	ShortStack
hbr-b0r1-4298	Hevea brasiliensis (Rubber Tree) 0	scaffold0742:465616-465733	-	4,177	31.44	UUGGCAUUCUGUCCACCUCC	miR394	MIRNA	ShortStack
hbr-MIR156-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0769:508835-508953	+	1,153	8.68	UUGACAGAAGAUAGAGAGCAC	miR156	MIRNA	miRBase21-BestBlastHit
hbr-MIR166a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0821:359793-359919	+	1,020,429	7,681.34	UCGGACCAGGCUUCAUUCCUC	miR166	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-4590	Hevea brasiliensis (Rubber Tree) 0	scaffold0837:76473-76632	+	8,044	60.55	UCGCUUGGUGCAGGUCGGGAA	miR168	MIRNA	ShortStack
hbr-b0r1-4604	Hevea brasiliensis (Rubber Tree) 0	scaffold0839:137919-138030	+	1,797	13.53	UUAGAUUCACGCACAAACUCG	miR403	MIRNA	ShortStack
hbr-b0r1-4855	Hevea brasiliensis (Rubber Tree) 0	scaffold0927:136590-136675	-	1,069	8.05	UCAUUGAGUGCAGCGUUGAUG	miR397	MIRNA	ShortStack
hbr-MIR396b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1011:192107-192260	+	762,464	5,739.50	UUCCACAGCUUUCUUGAACUG	miR396	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-5049	Hevea brasiliensis (Rubber Tree) 0	scaffold1011:192118-192259	+	762,464	5,739.50	UUCCACAGCUUUCUUGAACUG	miR396	MIRNA	ShortStack
hbr-b0r1-5050	Hevea brasiliensis (Rubber Tree) 0	scaffold1011:198527-198633	-	297,789	2,241.63	UUCCACAGCUUUCUUGAACUU	miR396	MIRNA	ShortStack
hbr-b0r1-5087	Hevea brasiliensis (Rubber Tree) 0	scaffold1026:270255-270533	-	113,705	855.92	UUUGGAUUGAAGGGAGCUCUA	miR159	MIRNA	ShortStack
hbr-MIR159a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1026:270259-270479	-	113,700	855.88	UUUGGAUUGAAGGGAGCUCUA	miR159	MIRNA	miRBase21-BestBlastHit
hbr-MIR159b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1026:270259-270472	-	113,700	855.88	UUUGGAUUGAAGGGAGCUCUA	miR159	MIRNA	miRBase21-BestBlastHit
hbr-MIR398-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1129:195945-196084	-	468	3.52	GGAGCGACCUGAGAUCACAUG	miR398	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-5319	Hevea brasiliensis (Rubber Tree) 0	scaffold1129:195981-196112	-	471	3.55	GGAGCGACCUGAGAUCACAUG	miR398	MIRNA	ShortStack
hbr-b0r1-5324	Hevea brasiliensis (Rubber Tree) 0	scaffold1132:127268-127349	-	1,218	9.17	CUGAAGUGUUUGGGGGAACUC	miR395	MIRNA	ShortStack
hbr-MIR476-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1336:127563-127688	+	2,380	17.92	UAAUCCUUCUUUGCAAAGUCC	miR476	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-5606	Hevea brasiliensis (Rubber Tree) 0	scaffold1336:127576-127667	+	2,380	17.92	UAAUCCUUCUUUGCAAAGUCC	miR476	MIRNA	ShortStack
hbr-b0r1-5736	Hevea brasiliensis (Rubber Tree) 0	scaffold1467:107651-107818	-	598,623	4,506.17	UUUGCAGUUCGAAAGUGGAAGC	miR9386	MIRNA	ShortStack
hbr-MIR9386-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1467:107717-107832	-	598,593	4,505.95	UUUGCAGUUCGAAAGUGGAAGC	miR9386	MIRNA	miRBase21-BestBlastHit
hbr-MIR482a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1566:33818-33930	+	183,420	1,380.71	AGAUGGGUGGCUGGGCAAGAAG	miR482	MIRNA	miRBase21-BestBlastHit
hbr-b0r1-5945	Hevea brasiliensis (Rubber Tree) 0	scaffold1763:68706-68807	-	333,814	2,512.81	UUUGCAGUUCGAAAGUGGAAGC	miR9386	MIRNA	ShortStack
hbr-b0r1-6026	Hevea brasiliensis (Rubber Tree) 0	scaffold1909:8214-8300	+	63,402	477.26	UUGACGACGAGAGAGAGCACG	miR535	MIRNA	ShortStack
hbr-b0r1-6341	Hevea brasiliensis (Rubber Tree) 0	scaffold3099:1560-1644	+	23,229	174.86	CAGAGGGAUGGCACUGAGAACA		MIRNA	ShortStack
hbr-b0r1-6361	Hevea brasiliensis (Rubber Tree) 0	scaffold3302:8254-8339	+	22,672	170.67	CAGAGGGAUGGCACUGAGAACA		MIRNA	ShortStack