Lunardon et al. 2020

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
GSM699076	5,512,052	10,087,273	GEO	0	root	Hai-7124	wt	A	1	root (seedlings with 2 fully expanded leaves) -- collected 12h and 24h after inoculation with water
GSM699077	4,080,811	9,639,487	GEO	0	root	Hai-7124	wt	B	1	root (seedlings with 2 fully expanded leaves) -- collected 12h and 24h after inoculation with Verticillium dahliae VJ37
SRR080703	4,418,392	3,330,929	SRA	0	fiber	3-79	wt	C	1	fiber (10 days post-anthesis) -- control conditions
SRR2032467	7,600,390	4,452,863	SRA	0	shoot apex	Hai1	wt	D	1	shoot apex (seedling stage with 2 leaves) -- control conditions
SRR2032468	6,012,217	5,909,319	SRA	0	shoot apex	Hai1	wt	D	1	shoot apex (seedling stage with 2 leaves) -- control conditions
SRR2032469	7,830,980	4,360,391	SRA	0	shoot apex	Hai1	wt	D	1	shoot apex (seedling stage with 2 leaves) -- control conditions
SRR2032470	4,897,392	6,465,860	SRA	0	shoot apex	Xinhai16	wt	E	1	shoot apex (seedling stage with 2 leaves) -- control conditions
SRR2032471	5,275,940	5,989,316	SRA	0	shoot apex	Xinhai16	wt	E	1	shoot apex (seedling stage with 2 leaves) -- control conditions
SRR2032472	5,587,911	6,279,907	SRA	0	shoot apex	Xinhai16	wt	E	1	shoot apex (seedling stage with 2 leaves) -- control conditions
SRR2032473	6,073,108	5,239,309	SRA	0	shoot apex	Hai1	wt	F	1	shoot apex (pre-budding stage with about 8 leaves) -- control conditions
SRR2032474	6,195,204	4,803,953	SRA	0	shoot apex	Hai1	wt	F	1	shoot apex (pre-budding stage with about 8 leaves) -- control conditions
SRR2032475	6,441,870	5,098,091	SRA	0	shoot apex	Hai1	wt	F	1	shoot apex (pre-budding stage with about 8 leaves) -- control conditions
SRR2032476	5,701,245	6,284,823	SRA	0	shoot apex	Xinhai16	wt	G	1	shoot apex (pre-budding stage with about 6 leaves) -- control conditions
SRR2032477	6,150,012	5,287,998	SRA	0	shoot apex	Xinhai16	wt	G	1	shoot apex (pre-budding stage with about 6 leaves) -- control conditions
SRR2032478	6,012,049	5,553,434	SRA	0	shoot apex	Xinhai16	wt	G	1	shoot apex (pre-budding stage with about 6 leaves) -- control conditions
SRR2032479	6,989,451	4,818,470	SRA	0	shoot apex	Hai1	wt	H	1	shoot apex (budding stage with 11 leaves) -- control conditions
SRR2032480	6,519,899	4,795,446	SRA	0	shoot apex	Hai1	wt	H	1	shoot apex (budding stage with 11 leaves) -- control conditions
SRR2032481	6,615,000	4,532,147	SRA	0	shoot apex	Hai1	wt	H	1	shoot apex (budding stage with 11 leaves) -- control conditions
SRR2032482	6,089,786	5,532,763	SRA	0	shoot apex	Xinhai16	wt	I	1	shoot apex (budding stage with 9 leaves) -- control conditions
SRR2032483	6,433,103	5,400,866	SRA	0	shoot apex	Xinhai16	wt	I	1	shoot apex (budding stage with 9 leaves) -- control conditions
SRR2032484	6,101,372	5,864,762	SRA	0	shoot apex	Xinhai16	wt	I	1	shoot apex (budding stage with 9 leaves) -- control conditions
SRR3098990	23,310,977	18,430,993	SRA	0	ovule	3-79	wt	J	1	ovule (0 days post-anthesis) -- control conditions
SRR3098997	22,582,747	18,006,586	SRA	0	fiber	3-79	wt	K	1	fiber (10 days post-anthesis) -- control conditions
SRR3099003	9,413,581	32,817,740	SRA	0	fiber	3-79	wt	L	1	fiber (20 days post-anthesis) -- control conditions
SRR3099008	7,383,159	44,320,562	SRA	0	fiber	3-79	wt	M	1	fiber (30 days post-anthesis) -- control conditions
SRR5138524	3,694,840	7,001,484	SRA	0	unknown	unknown	wt	N	1	unknown root -- stem -- leaf -- petal -- anther -- and stigma
SRR5138526	4,054,381	7,148,102	SRA	0	unknown	unknown	wt	O	1	unknown root -- stem -- leaf -- petal -- anther -- and stigma
SRR5138528	5,351,831	5,736,808	SRA	0	unknown	unknown	wt	P	1	unknown root -- stem -- leaf -- petal -- anther -- and stigma

	Yin_et_al_2012	Liu_et_al_2014	Hu_et_al_2015	ShortStack
MIRNA	0	0	161	76
nearMIRNA	0	0	354	207
siRNA20	0	0	27	18
siRNA21	2	1	218	871
siRNA22	0	0	64	864
siRNA23	0	0	83	240
siRNA24	0	0	1,300	65,028
OtherRNA	0	0	188	2,450
NotExpressed	0	0	1,839	0

Data from Lunardon et al. (2020)

Genome and annotations summary

Gossypium barbadense (Pima Cotton) genome build 1.0 (gba-b1.0)

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Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (28)