het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Gossypium barbadense (Pima Cotton) genome build 1.0 (gba-b1.0)

Version v1.0 of Gossypium barbadense cv. 3-79 from CottonGen

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
gba-MIRC46h-m1Gossypium barbadense (Pima Cotton) 1.0At10:98480343-98480439-10.00ACUCACUACAAGAAAAUAGGsiRNA20Hu_et_al_2015
gba-MIR172a-m1Gossypium barbadense (Pima Cotton) 1.0At10:103487940-103488062-20.00AACAGUGACUGUUGUACCAUsiRNA20Hu_et_al_2015
gba-b1.0r1-2757Gossypium barbadense (Pima Cotton) 1.0At11:26069845-26069864-2320.51ACAGCUUAGAAAUCAUCCCUsiRNA20ShortStack
gba-MIR7492dv-m1Gossypium barbadense (Pima Cotton) 1.0At11:73052931-73053057-10.00AUUUUCUUUAGCGGUGUUUGmiR7492siRNA20Hu_et_al_2015
gba-b1.0r1-4881Gossypium barbadense (Pima Cotton) 1.0Dt04:8318111-8318131+5591.23GGGGAUGUAGCUCAGAUGGGsiRNA20ShortStack
gba-MIRCS199a-m2Gossypium barbadense (Pima Cotton) 1.0scaffold1001:37440-37640.70.02AAACCACCUCUUCAAGCACUsiRNA20Hu_et_al_2015
gba-b1.0r1-8429Gossypium barbadense (Pima Cotton) 1.0scaffold10038:1847582-1847785-5591.23CGUCCCCGGCAACGGCGCCAsiRNA20ShortStack
gba-MIR169t-m1Gossypium barbadense (Pima Cotton) 1.0scaffold10607:89006-89161-20.00GCCAAGGAUGACAUGCCUAUAmiR169siRNA20Hu_et_al_2015
gba-b1.0r1-14226Gossypium barbadense (Pima Cotton) 1.0scaffold11929:136136-136155+1,1462.52UCUCCCCGGCAACGGCGCCAsiRNA20ShortStack
gba-MIRCS111a-m2Gossypium barbadense (Pima Cotton) 1.0scaffold13184:121503-121705-10.00AGAUUUUAAAAUUUUGGUCUsiRNA20Hu_et_al_2015
gba-MIRC52e-m2Gossypium barbadense (Pima Cotton) 1.0scaffold13459:54705-54919+10.00UAUUUAGAAAAAGGGUGAUAsiRNA20Hu_et_al_2015
gba-MIR156aa-m2Gossypium barbadense (Pima Cotton) 1.0scaffold13802:46067-46165.80.02GCUCUUUAUUUUCUGUCAUCsiRNA20Hu_et_al_2015
gba-MIRC23a-m2Gossypium barbadense (Pima Cotton) 1.0scaffold14316:346304-346437-30.01UCUGUCCUCGCUCCUUUCUGUsiRNA20Hu_et_al_2015
gba-MIRC42g-m2Gossypium barbadense (Pima Cotton) 1.0scaffold15478:245631-245769-10.00CAAGGACUAGUAGAAAUGGAsiRNA20Hu_et_al_2015
gba-b1.0r1-23900Gossypium barbadense (Pima Cotton) 1.0scaffold1606:162335-162354-1,1122.44UCUCCCCGGCAACGGCGCCAsiRNA20ShortStack
gba-MIR156u-m1Gossypium barbadense (Pima Cotton) 1.0scaffold16091:18548-18677.90.02GCUCUUUAUUUUCUGUCAUCsiRNA20Hu_et_al_2015
gba-MIR172v-m1Gossypium barbadense (Pima Cotton) 1.0scaffold17003:74096-74212+20.00CGGCAUCAUCAAGAUUCGCAAGCmiR172siRNA20Hu_et_al_2015
gba-b1.0r1-26200Gossypium barbadense (Pima Cotton) 1.0scaffold17450:98783-98803+5971.31GGGGAUGUAGCUCAGAUGGGsiRNA20ShortStack
gba-MIRC144v-m1Gossypium barbadense (Pima Cotton) 1.0scaffold17637:50213-50488+10.00AUAAGGACUAAAAUAAUCUAsiRNA20Hu_et_al_2015
gba-b1.0r1-30893Gossypium barbadense (Pima Cotton) 1.0scaffold20374:74128-74253+1,1472.52AAUUACCGAGACAAGAACUUsiRNA20ShortStack
gba-b1.0r1-32421Gossypium barbadense (Pima Cotton) 1.0scaffold21492:156839-156930+7211.58UCUGUGAUGAUGCGGCACUCsiRNA20ShortStack
gba-b1.0r1-32422Gossypium barbadense (Pima Cotton) 1.0scaffold21492:162932-163035+1,0422.29UCUGUGAUGAUGCGGCACUCsiRNA20ShortStack
gba-b1.0r1-33645Gossypium barbadense (Pima Cotton) 1.0scaffold22558:9806-9850+8501.87GAGACUAGGACGGUAUCUAAsiRNA20ShortStack
gba-MIRC112f-m1Gossypium barbadense (Pima Cotton) 1.0scaffold234:506335-506523+10.00CACAGGGGCAGAAACACGGCsiRNA20Hu_et_al_2015
gba-MIR7510de-m1Gossypium barbadense (Pima Cotton) 1.0scaffold2396:52484-52551.20.00CUUUUAGCGGCGUUUGUGGAsiRNA20Hu_et_al_2015
gba-MIRC42g-m3Gossypium barbadense (Pima Cotton) 1.0scaffold24638:74129-74267+10.00CAAGGACUAGUAGAAAUGGAsiRNA20Hu_et_al_2015
gba-MIR7506e-m1Gossypium barbadense (Pima Cotton) 1.0scaffold2899:62563-62662.20.00AUAUGUGUUUUCUUGUAAGAsiRNA20Hu_et_al_2015
gba-b1.0r1-40655Gossypium barbadense (Pima Cotton) 1.0scaffold3087:250880-250999-4881.07AAAAACUUUACAACUUGGGCsiRNA20ShortStack
gba-b1.0r1-41975Gossypium barbadense (Pima Cotton) 1.0scaffold3268:363582-363674+4210.92CGAAGAACAACAGAAGAACAsiRNA20ShortStack
gba-MIR7492ev-m2Gossypium barbadense (Pima Cotton) 1.0scaffold3679:114640-114737-10.00UAUCCACAAACGUCGCUAUAsiRNA20Hu_et_al_2015
gba-b1.0r1-47967Gossypium barbadense (Pima Cotton) 1.0scaffold4313:85682-85714-3640.80GAUUUUGUUCGUCGGAUAUCsiRNA20ShortStack
gba-b1.0r1-48844Gossypium barbadense (Pima Cotton) 1.0scaffold44954:28853-29451+74,144162.77GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
gba-MIR7506bo-m1Gossypium barbadense (Pima Cotton) 1.0scaffold4757:457099-457179-10.00AUGGGAUCUGCAUGAAUAUGsiRNA20Hu_et_al_2015
gba-b1.0r1-50626Gossypium barbadense (Pima Cotton) 1.0scaffold4804:9838-10017-3900.86UCAUGGACUUUAGCGGCGUUmiR7494siRNA20ShortStack
gba-b1.0r1-50777Gossypium barbadense (Pima Cotton) 1.0scaffold4838:156821-156842+2400.53CGAUCCCCGGCAACGGCGCCmiR8175siRNA20ShortStack
gba-MIR7492ff-m1Gossypium barbadense (Pima Cotton) 1.0scaffold4882:5222-5319.20.00AAACCUUUAGCGGCGAUUCUsiRNA20Hu_et_al_2015
gba-MIR169n-m1Gossypium barbadense (Pima Cotton) 1.0scaffold4935:115160-115277-930.20UAGCCAAGAAUGACUUGCCUmiR169siRNA20Hu_et_al_2015
gba-MIR7506au-m2Gossypium barbadense (Pima Cotton) 1.0scaffold5231:66715-66856-10.00UAUUGUGAUUUUGGGGAAGAsiRNA20Hu_et_al_2015
gba-MIR171e-m2Gossypium barbadense (Pima Cotton) 1.0scaffold5498:12238-12346-60.01AGAAAGCGAUGUUGGUGAGGUUCAmiR171siRNA20Hu_et_al_2015
gba-MIR171f-m2Gossypium barbadense (Pima Cotton) 1.0scaffold5498:12238-12345-60.01AGAAAGCGAUGUUGGUGAGGUUCAmiR171siRNA20Hu_et_al_2015
gba-MIR171g-m2Gossypium barbadense (Pima Cotton) 1.0scaffold5498:12238-12346-60.01AGAAAGCGAUGUUGGUGAGGUUCAmiR171siRNA20Hu_et_al_2015
gba-MIRCS234a-m2Gossypium barbadense (Pima Cotton) 1.0scaffold5731:4201-4533+30.01GAUUUAUCCGUUUUUUGAGUsiRNA20Hu_et_al_2015
gba-b1.0r1-60906Gossypium barbadense (Pima Cotton) 1.0scaffold7432:151710-151889+2,8086.16GGGGGCAGAGAAGGGGAUAGAGsiRNA20ShortStack
gba-b1.0r1-61114Gossypium barbadense (Pima Cotton) 1.0scaffold745:475930-475984.1490.33UCUACCGGGGAUUGGUCGUUsiRNA20ShortStack
gba-MIRC31g-m2Gossypium barbadense (Pima Cotton) 1.0scaffold8208:135995-136099+10.00AUUUUGAGAUCGGGAUAGCUsiRNA20Hu_et_al_2015