| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| gba-b1.0r1-113 | Gossypium barbadense (Pima Cotton) 1.0 | At01:35378870-35378902 | - | 14,866 | 32.64 | GGGGAUGUAGCUCAGGUGGUAGA | | siRNA23 | ShortStack |
| gba-MIRC116b-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At01:73923854-73923954 | . | 4 | 0.01 | UCGAUUAGAAUUCACUUCUUCCU | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC6a-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At02:26210217-26210417 | - | 1 | 0.00 | GGGAUGUUAUAGGCUACUUAGAG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-354 | Gossypium barbadense (Pima Cotton) 1.0 | At02:84489035-84489062 | + | 6,861 | 15.06 | GGGGAUGUAGCUCAUAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-665 | Gossypium barbadense (Pima Cotton) 1.0 | At04:1166454-1166642 | + | 8,195 | 17.99 | CGGCCUGAGAUCAUCUGAAAAGU | | siRNA23 | ShortStack |
| gba-MIR7510dc-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At04:4055419-4055486 | . | 2 | 0.00 | GCGGCGUUUGUAAAAAAGCGCCA | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7510cy-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At04:4055420-4055480 | . | 2 | 0.00 | AAAAGCCAUGACUUUUAGCGGCUC | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7510dk-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At04:4055420-4055485 | . | 2 | 0.00 | AAAAGCCAUGACUUUUAGCGGCUC | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC68a-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At04:8678639-8679049 | - | 7 | 0.02 | CAAAGAAGACAUAACUGAACAUU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-1198 | Gossypium barbadense (Pima Cotton) 1.0 | At05:90593514-90593542 | + | 433 | 0.95 | UUACGGAAUUGAGUUUUGAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-1223 | Gossypium barbadense (Pima Cotton) 1.0 | At05:93442719-93442743 | - | 270 | 0.59 | UGUUUUGCUGUAGUGAUUCGCCU | | siRNA23 | ShortStack |
| gba-MIRC28bb-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At07:11377985-11378151 | - | 2 | 0.00 | AUGGAUAGAACUUUUAACAGAAGG | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7492eb-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At07:77795987-77796088 | + | 4 | 0.01 | UUAUAGAAUGUGAGCUUUAGCGG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-1906 | Gossypium barbadense (Pima Cotton) 1.0 | At08:91797909-91798075 | - | 813 | 1.79 | CGGAAAAGAAUUCAACAACAAGU | | siRNA23 | ShortStack |
| gba-MIRCS98a-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At09:6132740-6132822 | . | 3 | 0.01 | AAGAUCGACAUACCCUAUUAAGC | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7504r-m1 | Gossypium barbadense (Pima Cotton) 1.0 | At10:100804604-100804746 | + | 1 | 0.00 | UGGAAAGGGAUACAGAUGACGUC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-3789 | Gossypium barbadense (Pima Cotton) 1.0 | C30591204:1-249 | - | 2,543 | 5.58 | AGGGAUGUAGCGCAGCUUGGUAG | | siRNA23 | ShortStack |
| gba-b1.0r1-3952 | Gossypium barbadense (Pima Cotton) 1.0 | Dt01:2377494-2377521 | + | 793 | 1.74 | UCGAGACAAUGAACAUGAUGCCU | | siRNA23 | ShortStack |
| gba-MIR7492dd-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt01:29687166-29687248 | + | 4 | 0.01 | AAAGGUCAUAAUCUUUAGCGGUG | | siRNA23 | Hu_et_al_2015 |
| gba-MIRCS103a-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt01:46228303-46228364 | + | 4 | 0.01 | AUUGAUAGUUUGAGGAUGUAACU | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC73a-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt01:57274098-57274236 | . | 4 | 0.01 | AGAAUCAGAAAAUAAUAUCUUAU | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC31k-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt03:5487232-5487623 | + | 1 | 0.00 | UUUAGAUAACUCGGGUAUUAAAU | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7492by-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt04:37110263-37110463 | - | 1 | 0.00 | UUGGGUAAGCGCCACUAAAGACC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-5135 | Gossypium barbadense (Pima Cotton) 1.0 | Dt05:9488139-9488269 | . | 294 | 0.65 | AAAUGUAAGAAGAACAAAAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-5462 | Gossypium barbadense (Pima Cotton) 1.0 | Dt06:2192852-2192875 | - | 844 | 1.85 | CUGAUUCGGGUUAGGACGGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-5660 | Gossypium barbadense (Pima Cotton) 1.0 | Dt06:62176795-62176874 | . | 699 | 1.54 | CGGAUCAUACAACUCUAACAAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-5973 | Gossypium barbadense (Pima Cotton) 1.0 | Dt07:25255270-25255307 | - | 463 | 1.02 | AGACUGAGAAUCGAUAUGAACUA | | siRNA23 | ShortStack |
| gba-b1.0r1-6117 | Gossypium barbadense (Pima Cotton) 1.0 | Dt07:59034928-59035163 | - | 1,073 | 2.36 | UUAGAACUUUAGCCUGGCAAACC | | siRNA23 | ShortStack |
| gba-b1.0r1-6170 | Gossypium barbadense (Pima Cotton) 1.0 | Dt08:5489690-5489714 | - | 308 | 0.68 | AUGAGAAUGGAUUGUAUAAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-6199 | Gossypium barbadense (Pima Cotton) 1.0 | Dt08:14151896-14152066 | - | 502 | 1.10 | UGUGUAAAUUCUGAUUGACUGCA | | siRNA23 | ShortStack |
| gba-MIR7510z-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt08:28542351-28542426 | + | 1 | 0.00 | UGACUUUUAGCGGCGCUUCUACC | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7510ak-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt08:28542352-28542426 | + | 1 | 0.00 | UGACUUUUAGCGGCGCUUCUACC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-6262 | Gossypium barbadense (Pima Cotton) 1.0 | Dt08:55593813-55593864 | - | 662 | 1.45 | AUUGAUCAGUGGUAGCUUCGGCA | | siRNA23 | ShortStack |
| gba-b1.0r1-6363 | Gossypium barbadense (Pima Cotton) 1.0 | Dt08:64149278-64149307 | + | 807 | 1.77 | AAGACUGAGAAAAGAUGAAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-6417 | Gossypium barbadense (Pima Cotton) 1.0 | Dt09:852214-852237 | + | 376 | 0.83 | CAUAAUUGAAACUCUAUAUGCCU | | siRNA23 | ShortStack |
| gba-MIR7492bk-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt09:18945253-18945319 | - | 2 | 0.00 | CAACGUCGCUAUAGAACAUGAUC | miR7492 | siRNA23 | Hu_et_al_2015 |
| gba-MIR7492gj-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt09:40918523-40918620 | - | 1 | 0.00 | AAGCGCCGCUAAAGAUUAGGUUA | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC29c-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt10:9740435-9740574 | . | 24 | 0.05 | UUUCAACUAGUUAGAUCGAUUCGA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-7462 | Gossypium barbadense (Pima Cotton) 1.0 | Dt11:64837122-64837145 | + | 126 | 0.28 | AAUGUACAAGGACUGGUUUGCCU | | siRNA23 | ShortStack |
| gba-MIR7492gj-m3 | Gossypium barbadense (Pima Cotton) 1.0 | Dt12:10693830-10693927 | + | 1 | 0.00 | AACGCCGCUAAAGACUAUGAUCU | | siRNA23 | Hu_et_al_2015 |
| gba-MIR477a-m3 | Gossypium barbadense (Pima Cotton) 1.0 | Dt12:59655587-59655677 | + | 86 | 0.19 | UGAAGCGCUGGAGGGGAGAGUGG | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC28l-m1 | Gossypium barbadense (Pima Cotton) 1.0 | Dt13:1108388-1108585 | + | 1 | 0.00 | UACAUUAAAUCAAGGAGCAAACU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-7957 | Gossypium barbadense (Pima Cotton) 1.0 | Dt13:8780987-8781117 | - | 2,010 | 4.41 | GUGUACUUAAUAUGUCUGAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-8083 | Gossypium barbadense (Pima Cotton) 1.0 | Dt13:57551760-57551818 | - | 357 | 0.78 | AGAUAGUAACUCAUAGUGUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-8308 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10013:28269-28292 | - | 580 | 1.27 | ACGUAGAACUUAAGGAUAAAACC | | siRNA23 | ShortStack |
| gba-b1.0r1-8416 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10038:1288573-1288677 | + | 1,321 | 2.90 | ACCGAUUGAAUUGAGAACUGACU | | siRNA23 | ShortStack |
| gba-b1.0r1-8507 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10067:19772-19800 | - | 570 | 1.25 | AACCAAUGACUAUUCAUGAUUCC | | siRNA23 | ShortStack |
| gba-b1.0r1-8645 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10116:21966-22065 | - | 856 | 1.88 | UCACGUCUGUCGAGUGUGGGCUU | | siRNA23 | ShortStack |
| gba-b1.0r1-8660 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10121:123509-123655 | - | 732 | 1.61 | UUGGACCAAUGAACCAAUAGCCU | | siRNA23 | ShortStack |
| gba-MIR7510dw-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10124:153211-153319 | + | 2 | 0.00 | CACAAACGCCGCUAAAAGCCCUA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-8729 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10133:102908-103008 | - | 390 | 0.86 | CUGAGUCGGAUAUAGUUGGCAUA | | siRNA23 | ShortStack |
| gba-MIR7500ab-m4 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10212:69030-69157 | - | 1 | 0.00 | UUUUGGGGGAAAGUGGGAAGGGU | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7500d-m4 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10212:69030-69157 | - | 1 | 0.00 | UUUUGGGGGAAAGUGGGAAGGGU | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7500f-m4 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10212:69030-69157 | - | 1 | 0.00 | UUUUGGGGGAAAGUGGGAAGGGU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-9095 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10229:99724-99866 | + | 419 | 0.92 | UUUAGAACUCCGGCAGCUUUGCA | | siRNA23 | ShortStack |
| gba-MIR7506ba-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1030:6132-6259 | + | 2 | 0.00 | CUGGGACAUGGCAUCGGAACAAA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-9459 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10388:82418-82456 | - | 349 | 0.77 | CAGAGAAAGGAUUGUAUGAAACU | | siRNA23 | ShortStack |
| gba-MIR167a-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10555:337170-337513 | . | 5 | 0.01 | CUCUCACCUCGGCUACACACUAC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-10116 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10607:151628-151736 | - | 547 | 1.20 | UUUCAUUAGCGUUUGGGACAAAA | | siRNA23 | ShortStack |
| gba-b1.0r1-10150 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10617:131862-131967 | + | 179,674 | 394.44 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-10260 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1066:201816-202061 | - | 2,518 | 5.53 | GAGAAUUGAAUAGGACUGUAAUU | | siRNA23 | ShortStack |
| gba-b1.0r1-10482 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10718:490396-490418 | + | 172 | 0.38 | AAAUGUAGGAUGAGUUUUGAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-10770 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10802:9734-9894 | + | 1,611 | 3.54 | CUGAGUCGGAUAUAGUUGGCAUA | | siRNA23 | ShortStack |
| gba-MIRC26d-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1094:115164-115368 | - | 4 | 0.01 | UUAAGGGCUAAAAUAGGUGAAAAA | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7492dc-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1094:609051-609135 | - | 1 | 0.00 | AUGUUCUUUAGCGGCGCUUUUAC | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7492db-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1094:609052-609140 | - | 1 | 0.00 | AUGUUCUUUAGCGGCGCUUUUAC | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7492do-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1094:609052-609140 | - | 1 | 0.00 | AUGUUCUUUAGCGGCGCUUUUAC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-11363 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10956:41657-41903 | . | 305 | 0.67 | CAGAAUGACCAAUUUACUCUUUA | | siRNA23 | ShortStack |
| gba-b1.0r1-11643 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1103:289520-289586 | + | 185 | 0.41 | AAAAUUGAGUGACUGUUGGUAUA | | siRNA23 | ShortStack |
| gba-b1.0r1-11719 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11052:367048-367380 | + | 2,520 | 5.53 | GAACAUGGACUGUAAAAUGGACA | | siRNA23 | ShortStack |
| gba-b1.0r1-12373 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11321:85667-86147 | - | 7,355 | 16.15 | ACGAGAAAGGAUUGUAUGAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-12417 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11337:1969-1991 | + | 493 | 1.08 | CUCGAGAUCUUAAGAAAUGAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-12486 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11362:262024-262095 | - | 1,964 | 4.31 | GUGUACUUAAUAUGUCUGAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-12487 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11363:100531-100649 | + | 360 | 0.79 | CACCCAUGGACAACUCUACUACU | | siRNA23 | ShortStack |
| gba-b1.0r1-12815 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11429:44350-44368 | - | 85 | 0.19 | UACUGUGUACUGGGUGCUGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-12998 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11491:308216-308332 | . | 163 | 0.36 | UGACACUGAGUUCUGGAUGCAAG | | siRNA23 | ShortStack |
| gba-b1.0r1-13353 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11600:94180-94222 | . | 306 | 0.67 | UUCUCGAGAAAGAUCGUAUCCUA | | siRNA23 | ShortStack |
| gba-MIR477k-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11667:11518-11611 | - | 4 | 0.01 | AUUGCCAGGGCAGUAUUCGGAGG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-13590 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11677:88921-89001 | + | 30,034 | 65.93 | GGGGGUGUAGCUCAUAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-13824 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11730:483019-483042 | - | 441 | 0.97 | CAAAUUAUGUAACAUGGAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-13975 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11800:171580-171604 | - | 803 | 1.76 | CUGAUUCGGGUUAGGACGGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-14364 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11988:68160-68598 | - | 1,887 | 4.14 | UUUAGAAAGCCAUAAGUAGAGAA | | siRNA23 | ShortStack |
| gba-b1.0r1-14629 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1209:188773-188817 | - | 838 | 1.84 | CUCGAGGGUUCGUUUAAUGGACA | | siRNA23 | ShortStack |
| gba-b1.0r1-14650 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12094:235265-235293 | + | 389 | 0.85 | UUACGGAAUUGAGUUUUGAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-14923 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12180:160738-160837 | - | 1,157 | 2.54 | UGAAUGACUAAGCUUAGAACU | | siRNA23 | ShortStack |
| gba-MIRC146f-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12395:69057-69177 | + | 1 | 0.00 | UCGAUGAUAUAAGCCCGAAGCAU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-15554 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12415:322492-322515 | - | 197 | 0.43 | AUUGGGAAUCAAGUGUAGAACUU | | siRNA23 | ShortStack |
| gba-b1.0r1-15626 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12440:195720-195752 | - | 1,168 | 2.56 | AAGAUGUGUUAGAUUAUUGGGGC | | siRNA23 | ShortStack |
| gba-b1.0r1-15715 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold125:210938-211105 | . | 639 | 1.40 | UCUACGCCUGUAGGGUCUUGCCC | | siRNA23 | ShortStack |
| gba-b1.0r1-15748 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12518:37601-37636 | + | 536 | 1.18 | AGAAUAGACAUGAUUAGAACCUA | | siRNA23 | ShortStack |
| gba-b1.0r1-16743 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12901:45857-45994 | - | 874 | 1.92 | UGCAGAAUUGUAGACCAGGUGAC | | siRNA23 | ShortStack |
| gba-b1.0r1-17309 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13132:83034-83119 | + | 2,246 | 4.93 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| gba-MIRC97a-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13184:66035-66304 | + | 3 | 0.01 | UACACCCGAAACACUUAACCACU | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC144u-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13314:354289-354592 | + | 5 | 0.01 | UUGCUUUUAAUAGUAUAAGGACU | miR5741 | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-18047 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13386:18888-18935 | - | 2,975 | 6.53 | AGACUGACUAGUUGAACCUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-18058 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13394:722-754 | + | 196 | 0.43 | CAUUGCAUUUGCAUGAUCGUUGU | | siRNA23 | ShortStack |
| gba-b1.0r1-18350 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1351:149089-149186 | . | 319 | 0.70 | UAGCGUGAGACAAAAAGAAAACU | miR5207 | siRNA23 | ShortStack |
| gba-MIRC104o-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13525:125913-126212 | - | 2 | 0.00 | UGUGUGAAUAGACUCGUUGAUAGC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-18426 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13536:114685-115202 | + | 8,179 | 17.96 | UCGAAUGAAUUCAAGAACAUAUU | | siRNA23 | ShortStack |
| gba-b1.0r1-18482 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13565:169565-169763 | + | 494 | 1.08 | UAUGGAACUGUCAGGAUCUGCCU | | siRNA23 | ShortStack |
| gba-MIRC9d-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1361:496175-496361 | + | 1 | 0.00 | UUUGGACUAAGGGUUUUCUGCCU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-18743 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13693:33301-33326 | - | 506 | 1.11 | CAUGGGUUUGGGACACGGGCGUG | | siRNA23 | ShortStack |
| gba-MIR394i-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14146:159438-159526 | + | 1 | 0.00 | AUGGAGGUGGCCAGUAUGUCAAA | miR394 | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-20047 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1432:584005-584034 | + | 255 | 0.56 | AUAAGUAGAACCAAUGUAGAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-20336 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14417:126463-126496 | - | 498 | 1.09 | AGACUGAGAAUCGAUAUGAACUA | | siRNA23 | ShortStack |
| gba-b1.0r1-21279 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1471:285561-285600 | + | 614 | 1.35 | AGUGAAGACAGUGAACAGAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-21511 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14802:55944-55969 | - | 995 | 2.18 | CGAGAAUCGAUCAAGGUACUAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-21570 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14816:237618-237686 | . | 284 | 0.62 | UCACGUUUGUCGAGUGUGGGCUU | | siRNA23 | ShortStack |
| gba-b1.0r1-21745 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14944:37345-37367 | + | 216 | 0.47 | UUUGAGAAGUAUAACGGGACAAG | | siRNA23 | ShortStack |
| gba-b1.0r1-22034 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold15088:204995-205029 | + | 707 | 1.55 | UCAGAGAACUAUUGAAGAAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-22099 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1509:205916-205945 | + | 427 | 0.94 | AUGCGCCUGUAGGGAUUCGAACC | | siRNA23 | ShortStack |
| gba-MIRC31ae-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold15121:9174-9549 | . | 4 | 0.01 | CUUCACAAAAUCAUCAAACAACU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-22221 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1520:366053-366076 | - | 249 | 0.55 | CUGAGUCGGAUAUAGUUGGCAUA | | siRNA23 | ShortStack |
| gba-MIR7502g-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1552:213875-214008 | + | 1 | 0.00 | CAGGAUGACCAAUUUACUCUUUC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-24035 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1619:67263-67570 | + | 4,885 | 10.72 | UAAUCUAUUGUGGACAAAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-24042 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1619:153008-153165 | - | 942 | 2.07 | CAUUUUUGGAAAGUGGAUAAGGU | | siRNA23 | ShortStack |
| gba-b1.0r1-24237 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold16302:8905-8970 | - | 204 | 0.45 | UAUCGCAUACAUCAAACUCCCAA | | siRNA23 | ShortStack |
| gba-b1.0r1-24265 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1631:88707-88759 | - | 660 | 1.45 | AUUGAUCAGUGGUAGCUUCGGCA | | siRNA23 | ShortStack |
| gba-b1.0r1-24380 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold16395:34271-34296 | - | 192 | 0.42 | UCAAAAUGCCAGAAUUCGAAAAAU | | siRNA23 | ShortStack |
| gba-b1.0r1-24710 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold16632:36571-36606 | + | 365 | 0.80 | CAUGGACCCCUUCUGAUACGAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-24932 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold16814:6845-6873 | + | 1,109 | 2.44 | UAGAUGUGGACACUUUGAAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-25383 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17120:135164-135192 | + | 822 | 1.81 | AAGACUGAGAAAAGAUGAAAACU | | siRNA23 | ShortStack |
| gba-MIR156o-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17271:22682-22784 | . | 79 | 0.17 | GCUCACUUCUCUUUUUGUCAGUU | miR156 | siRNA23 | Hu_et_al_2015 |
| gba-MIRC31v-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17271:110996-111334 | . | 3 | 0.01 | ACAAAGGACUAGAUCGUAAAAGC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-26146 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17414:141449-141548 | - | 405 | 0.89 | CCAUUCCUGUAGAAAAAUGAGAA | | siRNA23 | ShortStack |
| gba-b1.0r1-26765 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17751:149320-149481 | . | 465 | 1.02 | UAGGCGGAAUCAAAAUUACAAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-26885 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17803:27290-27361 | + | 453 | 0.99 | CUCGAGGAUGUAGCUUUACAACU | | siRNA23 | ShortStack |
| gba-MIRC28ae-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17837:288864-288968 | + | 3 | 0.01 | GUCCUUAUAUGUUAGAGCAAAUU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-27123 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17849:277457-277487 | + | 152 | 0.33 | UUUCAGUGGUGUCGGAAAUGGUA | | siRNA23 | ShortStack |
| gba-b1.0r1-27125 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17849:285321-285390 | - | 28,212 | 61.93 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-27349 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1795:264152-264215 | + | 601 | 1.32 | ACCAUUCGGACAACUGAAGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-27563 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1811:341731-341911 | + | 8,337 | 18.30 | CGGCCUGAGAUCAUCUGAAAAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-28249 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold18484:214631-214980 | + | 2,089 | 4.59 | CCUCACUGUAUAACAUUGAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-28338 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold18520:220499-220523 | + | 685 | 1.50 | UUCCUUGACGGUCGCUGUUACAG | | siRNA23 | ShortStack |
| gba-MIR7510dd-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1900:243549-243616 | - | 1 | 0.00 | ACUUUUAACGGCAUUUGUAAAAA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-29077 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold19048:136213-136255 | + | 13,523 | 29.69 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-29078 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold19048:136781-136822 | + | 13,278 | 29.15 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-29778 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold19565:389628-389655 | + | 786 | 1.73 | UCGAGACAAUGAACAUGAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-29790 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold19567:21044-21079 | + | 563 | 1.24 | AGAAUAGACAUGAUUAGAACCUA | | siRNA23 | ShortStack |
| gba-b1.0r1-29845 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold196:95490-95513 | + | 431 | 0.95 | GUUGAAUGGAAUGGAAUAGAACA | | siRNA23 | ShortStack |
| gba-b1.0r1-30026 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold19657:1459-1572 | . | 313 | 0.69 | CAGUCACUCAACUUUAAAAAAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-30027 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold19657:4621-4714 | + | 2,699 | 5.93 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| gba-b1.0r1-30683 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2021:50412-50444 | - | 949 | 2.08 | UUGGACCAAGAACCGACCGAGGU | | siRNA23 | ShortStack |
| gba-b1.0r1-30695 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold20210:23448-23863 | . | 2,749 | 6.04 | UAUUGUAUGACCUUUGUUCGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-30875 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold20371:115352-115388 | + | 689 | 1.51 | AUCAAGAAUUCCGAAUAUGAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-31040 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2046:152815-153056 | + | 575 | 1.26 | UGAGAAUUUAGACUGUAAACACA | | siRNA23 | ShortStack |
| gba-MIRC87c-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold20783:130874-131015 | - | 7 | 0.02 | CACUGGGUCUCAAUGUAUAUAGC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-32132 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold21128:297577-297678 | + | 76,153 | 167.18 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-32294 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2126:295924-295976 | + | 1,094 | 2.40 | UCAAUGGAAUGGAACGUGAGCCU | | siRNA23 | ShortStack |
| gba-MIR7492n-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold216:20278-20400 | + | 5 | 0.01 | ACUUUUAGCAGCGCUUCCCCACA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-32684 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold21692:39617-39646 | . | 2,639 | 5.79 | CUUUAGAAGAUUCCGACAGCAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-32774 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold21803:26165-26298 | + | 1,251 | 2.75 | CCGGGAAAGGAUUGUAUGAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-32943 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2196:213436-213465 | + | 7,005 | 15.38 | GGGGAUGUAGCUCAUAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-33067 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold22007:64850-65168 | + | 1,813 | 3.98 | AACUAUGAAAAUAAGGGCUUCCG | | siRNA23 | ShortStack |
| gba-b1.0r1-33468 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold22363:47587-47649 | - | 1,259 | 2.76 | AUUCGGUAAGAACCCUCGGUACA | | siRNA23 | ShortStack |
| gba-MIRC31h-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2242:161633-161740 | - | 1 | 0.00 | AUUUUUGAGAUCGGGACAAUUUA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-33593 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2249:244133-244159 | + | 155 | 0.34 | UACGAACUGUGAAAGCGUGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-33737 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2266:67783-67824 | - | 365 | 0.80 | CUGAGUCGGAUAUAGUUGGCAUA | | siRNA23 | ShortStack |
| gba-b1.0r1-34121 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2300:120854-121044 | + | 12,341 | 27.09 | AACCAAUGACUAUUCAUGAUUCC | | siRNA23 | ShortStack |
| gba-b1.0r1-34655 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold23516:50220-50520 | . | 581 | 1.28 | ACGGAUUGUAAUAAAUUAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-34733 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2359:356872-357113 | - | 1,752 | 3.85 | UGAGAUUAGUUACUGUAGCGGUA | | siRNA23 | ShortStack |
| gba-b1.0r1-34754 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2359:728088-728153 | + | 428 | 0.94 | AAGAGGAGCUAAGGUAGAGGGUG | | siRNA23 | ShortStack |
| gba-b1.0r1-35038 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold23867:570-611 | - | 886 | 1.95 | AUAUACCAUUAGAACAUGAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-35398 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2412:242707-242795 | - | 1,765 | 3.88 | GAACAUGAAUCAUAAAACGGACA | | siRNA23 | ShortStack |
| gba-b1.0r1-36025 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold24843:459-489 | - | 130 | 0.29 | CGAUAAAAUUGGAACGAUACAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-37045 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2598:573888-573920 | + | 6,626 | 14.55 | UGAACAUAGCGGAUGAACUUAUU | | siRNA23 | ShortStack |
| gba-b1.0r1-37076 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2605:152827-152916 | - | 802 | 1.76 | CGGAAAAGAAUUCAACAACAAGU | | siRNA23 | ShortStack |
| gba-MIRCS103a-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold26128:37299-37360 | - | 4 | 0.01 | AUUGAUAGUUUGAGGAUGUAACU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-37166 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold26201:79082-79108 | + | 90 | 0.20 | UUCAUUUAAGUAGAUCAUGGAUA | | siRNA23 | ShortStack |
| gba-b1.0r1-37265 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold26287:7717-7747 | + | 2,626 | 5.77 | GGGAAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-37266 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold26287:11495-11519 | + | 2,622 | 5.76 | GGGAAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-37267 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold26287:13797-13826 | + | 2,722 | 5.98 | GGGAAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-37638 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2675:239402-239451 | - | 321 | 0.71 | ACAAGUAGAAUCCGUAUAUAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-37830 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold270:411219-411242 | - | 270 | 0.59 | UAAACGUGAACUUAGCCUGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-38342 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2761:69241-69362 | . | 1,373 | 3.01 | AAAACCUAGAAUCGUUGUAUUUA | | siRNA23 | ShortStack |
| gba-b1.0r1-38520 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold27766:20450-20621 | - | 905 | 1.99 | UUGGUUGACUCAGACUUACGCCU | | siRNA23 | ShortStack |
| gba-MIRC80i-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2784:119707-119891 | - | 2 | 0.00 | CACAUGGGUGUGUGAUCGACCGU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-38596 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2793:10667-10829 | - | 432 | 0.95 | CAGAACACUGGAUGGUUAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-38730 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold28025:865-997 | - | 1,034 | 2.27 | CAGAGAAGAACAAAGAAAAGACU | | siRNA23 | ShortStack |
| gba-b1.0r1-39780 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold29723:1345-1446 | . | 74 | 0.16 | UUGGCAAAGGAGAACAAUGGAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-39801 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2975:299279-299453 | - | 21,069 | 46.25 | AGUCCCGAACCCGUCGGCUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-40109 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold30153:1958-1995 | + | 1,568 | 3.44 | UAGAUGUGGACACUUUGAAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-40468 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3053:386219-386326 | - | 4,120 | 9.05 | UUGUUAGAGCUUGAGAAGAUACA | | siRNA23 | ShortStack |
| gba-b1.0r1-40551 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3069:513604-513634 | - | 15,028 | 32.99 | GGGGAUGUAGCUCAGGUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-40674 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3088:20834-20940 | . | 271 | 0.60 | UACAACUGAACAACCAAAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-40789 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3097:43134-43245 | - | 443 | 0.97 | CUACCCGUCAAGCUUGAAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-40790 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3097:46573-46595 | - | 386 | 0.85 | CUACCCGUCAAGCUUGAAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-40821 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3105:6594-6689 | + | 257,594 | 565.50 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-41389 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3191:91064-91161 | - | 795 | 1.75 | AUAUGAGACUUAUGUAACAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-41567 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold322:108137-108179 | + | 1,420 | 3.12 | UGAGAUUAGAUACUGUAGUGAUC | | siRNA23 | ShortStack |
| gba-MIR827a-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3229:562205-562345 | + | 1 | 0.00 | AUCGAACCGAUAGAAUACACCCG | miR827 | siRNA23 | Hu_et_al_2015 |
| gba-MIR827f-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3229:562205-562345 | + | 1 | 0.00 | AUCGAACCGAUAGAAUACACCCG | miR827 | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-41931 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3265:172353-172390 | + | 347 | 0.76 | CUGAGUCGGAUAUAGUUGGCAUU | | siRNA23 | ShortStack |
| gba-b1.0r1-42189 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3294:114761-114827 | - | 28,935 | 63.52 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-42257 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3298:422996-423025 | - | 1,299 | 2.85 | AUGAGAAUGGAUUGUAUGAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-42757 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold33696:2672-2871 | - | 4,534 | 9.95 | UGACUGUACAGCAAAACACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-42980 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold34025:26537-26692 | - | 517 | 1.14 | CCUGAGAACUGAACCAUUAAACC | | siRNA23 | ShortStack |
| gba-b1.0r1-43093 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3423:208446-208518 | . | 555 | 1.22 | AUCCAGGAAACAACUCUCAGAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-43912 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3562:139725-139789 | + | 721 | 1.58 | AAUCCAAGAUCGUUGGGUGAUCA | | siRNA23 | ShortStack |
| gba-b1.0r1-44032 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3582:213645-213788 | - | 4,463 | 9.80 | GUUUCCGAGAUUGUAGUAGCUUA | | siRNA23 | ShortStack |
| gba-b1.0r1-44157 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold35974:53660-53740 | . | 647 | 1.42 | CGGAUCAUACAACUCUAACAAGU | | siRNA23 | ShortStack |
| gba-MIRC14a-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold35974:65265-65684 | . | 30 | 0.07 | AAUUUGACUAAAUAACGAUGACU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-44178 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3607:36442-36465 | + | 394 | 0.87 | UCCUGUUAGAAUUGUGUGACCCA | | siRNA23 | ShortStack |
| gba-b1.0r1-44348 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3626:39759-39791 | + | 5,142 | 11.29 | GCGUUUGGUCUAGUGGUAUGAUU | | siRNA23 | ShortStack |
| gba-b1.0r1-44637 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3685:214855-214987 | + | 302 | 0.66 | GUAAGAUAGACUUCUAAACGCCU | | siRNA23 | ShortStack |
| gba-MIR7510dp-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3693:160170-160321 | - | 1 | 0.00 | CUUUUAGUGGCGUUUGUGGGGGA | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7504aj-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3732:13068-13266 | + | 455 | 1.00 | ACGAGAAAGGAUUAUAUGAAACU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-45070 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3791:224115-224140 | + | 140 | 0.31 | CGUCAAAAAAGGAUUGGUGGCGA | | siRNA23 | ShortStack |
| gba-b1.0r1-45466 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3841:209069-209247 | + | 1,118 | 2.45 | ACUCAAGAUUCAAGGAUAAAAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-45471 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold38428:26982-27007 | - | 241 | 0.53 | AAAGAGAAGGAAAAAGAGAGCUU | | siRNA23 | ShortStack |
| gba-b1.0r1-45716 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold388:72875-72944 | + | 1,343 | 2.95 | ACCCGGGACUCACUGUAACACUC | | siRNA23 | ShortStack |
| gba-b1.0r1-45718 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3881:21934-22024 | - | 328 | 0.72 | UGUUUUGCUGUAGUGAUUCGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-45748 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3882:239524-239723 | - | 643 | 1.41 | CUGAGUCGGAUAUAGAUGGCAUA | | siRNA23 | ShortStack |
| gba-MIR7492dd-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3914:90857-90939 | + | 1 | 0.00 | UCAUGUUCUUUAGCAGCGUUCGU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-46005 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3927:211962-211985 | - | 332 | 0.73 | CAAGUUAUGUAACAUGGAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-46478 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold40007:1453-1559 | + | 479 | 1.05 | AAGUUAUUGUAGAAAACAUCUCA | | siRNA23 | ShortStack |
| gba-b1.0r1-46497 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4009:56558-56640 | + | 346 | 0.76 | UUCGAGAAAGUAGUACCCUAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-46958 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4118:438516-438586 | + | 893 | 1.96 | AGAGACAACUAUGAACUAUGAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-47115 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4143:87921-88012 | + | 283 | 0.62 | UUAAGAACUCCUCUAAGGCACCA | | siRNA23 | ShortStack |
| gba-b1.0r1-47328 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold41836:64641-64802 | . | 1,358 | 2.98 | UAGCGAUACUGUAGCGUGAGACU | miR5207 | siRNA23 | ShortStack |
| gba-b1.0r1-47329 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold41836:66686-66986 | . | 1,607 | 3.53 | UAGCGAUACUGUAGCGUGAGACU | miR5207 | siRNA23 | ShortStack |
| gba-b1.0r1-47352 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4185:195521-195604 | + | 1,276 | 2.80 | GGGGAUGUAACUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-47521 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold423:280206-280260 | - | 424 | 0.93 | UAUGUACUUGAGACGUAGAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-47522 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold423:281756-281813 | - | 464 | 1.02 | UAUGUACUUGAGACGUAGAGCCU | | siRNA23 | ShortStack |
| gba-MIRC45b-m4 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4351:22148-22208 | . | 2 | 0.00 | AAUAGGGUUUCAGAGCAUUACUAG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-48465 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold443:63807-63850 | + | 300 | 0.66 | UUUUCUAGGUGUGAUCGGACACA | | siRNA23 | ShortStack |
| gba-MIRCS165a-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4479:105760-106099 | + | 1 | 0.00 | AAGUAGUUCAACGGUAUAAAUAU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-49259 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4568:316134-316165 | - | 1,597 | 3.51 | AAUCAGAUUGUAACACAUGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-49412 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4594:85211-85379 | . | 3,012 | 6.61 | CGAGGACGUAGGUAUAAUUUAUC | | siRNA23 | ShortStack |
| gba-b1.0r1-51015 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4888:89471-89643 | - | 772 | 1.70 | AACCAAUGACUAUUCAUGAUUCC | | siRNA23 | ShortStack |
| gba-b1.0r1-51216 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold49279:61045-61182 | - | 2,209 | 4.85 | CAAUAACAAGAACUAAUGUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-51365 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold49549:2190-2237 | - | 33,620 | 73.81 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-51531 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4986:168633-168655 | - | 189 | 0.42 | UUCUUUUACGUUUGGAUGUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-51662 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5008:9378-9498 | - | 599 | 1.32 | UUCUUUAGAACAGUCAAACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-51667 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5008:390655-390680 | + | 1,160 | 2.55 | AUGAUCAAAUUGACUGAAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-51849 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold505:129792-129954 | . | 513 | 1.13 | GCCCAAUACGUUAGGACAUAACA | | siRNA23 | ShortStack |
| gba-b1.0r1-52580 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5186:428917-429037 | + | 603 | 1.32 | CGAGAAUGUAAGAUUUUGAAAGU | | siRNA23 | ShortStack |
| gba-b1.0r1-52780 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5216:139588-139905 | - | 1,648 | 3.62 | UAUGGAACUGUCAGGAUCUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-52926 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold52374:4047-4070 | - | 678 | 1.49 | UUGGACCAAUGAACCAAUAGCCU | | siRNA23 | ShortStack |
| gba-MIR7506at-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5308:336526-336624 | - | 2 | 0.00 | AUGACAGUCAGAUUAUCGAGAUG | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7506bs-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5308:336526-336624 | - | 2 | 0.00 | AUGACAGUCAGAUUAUCGAGAUG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-53238 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5329:17769-17801 | + | 1,011 | 2.22 | UAUGGAACUGUUAAGAUCUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-54264 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5562:363007-363114 | - | 5,415 | 11.89 | GUGGGCGUGCCGGAGUGGUUAUC | | siRNA23 | ShortStack |
| gba-MIR7506f-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5594:245563-245663 | + | 1 | 0.00 | GUGUAAGACCCUCGCUGGGGCAG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-54568 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5637:121381-121409 | - | 444 | 0.98 | CAUAAUUGAAACUCUAUAUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-54706 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5667:638260-638472 | - | 506 | 1.11 | CAAGUUUGGAUCUUGAAGGGACA | | siRNA23 | ShortStack |
| gba-MIRCS250a-m8 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5684:779-862 | + | 24 | 0.05 | UUAUUACACAAGUAUUCUGGCCU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-55060 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5776:83626-83691 | - | 585 | 1.28 | AUCACUGUUGACCAUAUACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-55100 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5776:324663-325429 | - | 100,132 | 219.82 | UCGAAUGAAUUCAAGAACAUAUU | | siRNA23 | ShortStack |
| gba-b1.0r1-55106 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5776:344568-344707 | + | 1,760 | 3.86 | UUAGUGCACUCGAACUCACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-55202 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5804:147700-147723 | - | 642 | 1.41 | AUUCUAAGAUUGUAAAGGAGCCA | | siRNA23 | ShortStack |
| gba-b1.0r1-55424 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5897:82879-83015 | - | 989 | 2.17 | UUAGAACUUUAGCCUGGCAAACC | | siRNA23 | ShortStack |
| gba-b1.0r1-55460 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold59:173009-173046 | - | 230 | 0.51 | CGACUCGAACUCAAAUCACACCU | | siRNA23 | ShortStack |
| gba-b1.0r1-55619 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5953:386893-386976 | + | 91,855 | 201.65 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-55663 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5968:405994-406037 | + | 522 | 1.15 | CUACUGUAGACCAAGAUAUAAAU | | siRNA23 | ShortStack |
| gba-b1.0r1-55714 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5969:340345-340441 | + | 1,915 | 4.20 | UUGGACUGAUAAAUCGUUUGCCU | | siRNA23 | ShortStack |
| gba-MIRC112ak-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5973:150145-150331 | - | 1 | 0.00 | AUACGGACUUGCAUAUUCGAGGU | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC112ak-m4 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5973:154713-154899 | - | 1 | 0.00 | AUACGGACUUGCAUAUUCGAGGU | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC112ak-m5 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5973:159494-159680 | - | 1 | 0.00 | AUACGGACUUGCAUAUUCGAGGU | | siRNA23 | Hu_et_al_2015 |
| gba-MIRCS176a-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5981:117760-117836 | - | 1 | 0.00 | UGACCUUGAGUGUUUAAUGGGUA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-56000 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold606:66546-66598 | . | 512 | 1.12 | AUGCAGAAUCUCUUCUUACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-56022 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6074:150043-150356 | . | 532 | 1.17 | ACCCAUGAUCAGAUCUAAUGACU | | siRNA23 | ShortStack |
| gba-b1.0r1-56572 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6259:144981-145008 | + | 473 | 1.04 | CACUCGGGACUCACUGUAACACU | | siRNA23 | ShortStack |
| gba-b1.0r1-56671 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6289:153963-153986 | - | 499 | 1.10 | AUUGGCCCUUGAACUUGACAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-56861 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6323:88807-88837 | + | 422 | 0.93 | UUCAAGACUGAUUAGCUGGGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-56985 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6360:38962-38986 | - | 94 | 0.21 | AUGGUACCUGUAGAUAAACUUAC | | siRNA23 | ShortStack |
| gba-b1.0r1-57441 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold647:69452-69557 | - | 563 | 1.24 | GUAGGACAGACUUCUAAACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-57488 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold648:78226-78254 | - | 272 | 0.60 | AGAAGUAGAAUCCAUAUAGAACU | | siRNA23 | ShortStack |
| gba-MIRC108b-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold652:131073-131192 | . | 3 | 0.01 | UUUAGGUGAGUCACACAUGGACC | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC144e-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6584:137597-137735 | - | 20 | 0.04 | UUCUUUUUAAUAGUAUAAGGACU | miR5741 | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-58055 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold667:19309-19331 | - | 273 | 0.60 | UUCUUUUACGUUUGGAUGUGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-58343 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6715:22686-22710 | + | 509 | 1.12 | UAGAACGUGGCGUGUAGAAGUCA | | siRNA23 | ShortStack |
| gba-b1.0r1-58424 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6741:169056-169080 | + | 296 | 0.65 | UUAGGGAUGAACAAUGAAUAGUU | | siRNA23 | ShortStack |
| gba-b1.0r1-58893 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6871:461112-461145 | - | 293 | 0.64 | ACCUGGGACUUAAGAAUGAAAUC | | siRNA23 | ShortStack |
| gba-b1.0r1-59181 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6956:114609-114762 | - | 474 | 1.04 | UGUGUAAAUUCUGAUUGACUGCA | | siRNA23 | ShortStack |
| gba-b1.0r1-59294 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6998:31258-31343 | + | 51,025 | 112.02 | GGGGAUGUAGCUCAUAUGGUAGA | | siRNA23 | ShortStack |
| gba-MIR477a-m6 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7032:273599-273689 | + | 84 | 0.18 | UGAAGCGCUGGAGGGGAGAGUGG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-59750 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7145:72654-72679 | + | 816 | 1.79 | GGGGAUGUAGCUUAGAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-59901 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7190:32163-32196 | + | 347 | 0.76 | GAGAGAAAGGAUUGUAUGAAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-59941 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7197:98086-98159 | + | 449 | 0.99 | UUCAAGUACUUUGAGCCUAUGAC | | siRNA23 | ShortStack |
| gba-b1.0r1-60554 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7353:13972-14023 | + | 371 | 0.81 | CGGGCUCGGGAGUCGGUUACACA | | siRNA23 | ShortStack |
| gba-b1.0r1-61757 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7649:52782-53216 | + | 1,333 | 2.93 | ACAGAAUAGACUAGCUGAAGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-61829 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7665:144350-144441 | . | 182 | 0.40 | AAGGGGAGGGACGAAUCGAAGCG | | siRNA23 | ShortStack |
| gba-b1.0r1-62041 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7712:196240-196262 | + | 383 | 0.84 | CUUGAUCAUGAUGGACAUCCACA | | siRNA23 | ShortStack |
| gba-b1.0r1-62194 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7777:313274-313473 | - | 1,755 | 3.85 | UUAAUACGCUAGAAUUGACGCCU | | siRNA23 | ShortStack |
| gba-MIRC122c-m4 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7814:370020-370288 | - | 1 | 0.00 | UACCGUAACGAGGCUGGGUUGGC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-62537 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7897:141590-141800 | - | 749 | 1.64 | UUCGAGUUCCGAUCGUGUGUUCA | | siRNA23 | ShortStack |
| gba-b1.0r1-62842 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7967:55519-55792 | + | 7,305 | 16.04 | AAGAUGUGUUAGAUUAUUGGGGC | | siRNA23 | ShortStack |
| gba-MIR7510ci-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7987:268447-268550 | + | 2 | 0.00 | AGUAGCGGCGCUUUUAGUAAAACG | | siRNA23 | Hu_et_al_2015 |
| gba-MIR8706d-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8075:17204-17300 | - | 7 | 0.02 | GAUUUAAGUUGAGUUUUAGGAUU | | siRNA23 | Hu_et_al_2015 |
| gba-MIR7510br-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8152:116201-116276 | . | 2 | 0.00 | UUAGCGGCGCAUUUUACACAAACG | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC59d-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8163:181861-182054 | + | 1 | 0.00 | CAAAUGAACUUUGGUCUAAUAUG | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-63697 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8205:62016-62046 | + | 281 | 0.62 | UGAUGACAUGUGACUCUCUCACU | | siRNA23 | ShortStack |
| gba-MIRC28aq-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8222:107033-107133 | . | 2 | 0.00 | CUUUUGUUGACGUACAUGAAUCA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-63818 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8239:742727-742871 | - | 86,914 | 190.80 | GGGGGUGUAGCUCAUAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-63860 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8260:116880-116973 | - | 273 | 0.60 | ACCCAAUGCGUUAGGACACAACG | | siRNA23 | ShortStack |
| gba-b1.0r1-63941 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold827:101050-101076 | + | 163 | 0.36 | UAAUGUAUGAUCGAUAUGUGACA | | siRNA23 | ShortStack |
| gba-b1.0r1-64027 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8299:30440-30462 | + | 118 | 0.26 | UUUUGGAAUGACCUGAAACGCCU | | siRNA23 | ShortStack |
| gba-MIRC144d-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8330:167650-167937 | + | 7 | 0.02 | AGGGACUAAGACUAAUUUGAUCU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-64396 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8400:99757-99943 | + | 585 | 1.28 | AUAGAGACUCUGAUGAAGCAUUA | | siRNA23 | ShortStack |
| gba-MIR7510cd-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8432:193357-193592 | - | 2 | 0.00 | AAAGGUCAUGUUAUUUAGCGGCA | miR7492 | siRNA23 | Hu_et_al_2015 |
| gba-MIRC78a-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8486:92635-92751 | + | 1 | 0.00 | UCAAAUUUAGCUAGAUUUUUCCU | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-64945 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8554:158428-158454 | + | 321 | 0.71 | AAUUGUGUGAAACAGUGACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-64955 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8554:214121-214182 | - | 341 | 0.75 | AAUUGUGUGAAACAGUGACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-64960 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8554:243664-243698 | + | 324 | 0.71 | UCCUAUGAAGAGACAUGAGAACU | | siRNA23 | ShortStack |
| gba-b1.0r1-65100 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8592:13344-13426 | - | 843 | 1.85 | GGUUUCGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| gba-b1.0r1-65166 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8619:48920-48953 | + | 1,035 | 2.27 | UAUGGAACUGUUAAGAUCUGCCU | | siRNA23 | ShortStack |
| gba-MIRC70b-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8622:252679-252994 | - | 2 | 0.00 | UUUUUUUUCAAGUAUGUCUGAUA | | siRNA23 | Hu_et_al_2015 |
| gba-MIRC70c-m3 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8622:252679-252994 | - | 2 | 0.00 | UUUUUUUUCAAGUAUGUCUGAUA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-65389 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold8688:9044-9110 | + | 18,152 | 39.85 | GGGGAUGUAGCUCAAAUGGUAGA | | siRNA23 | ShortStack |
| gba-b1.0r1-66635 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9109:152570-152602 | - | 522 | 1.15 | ACCGCGAACUUUGUCGGACGACA | | siRNA23 | ShortStack |
| gba-b1.0r1-66657 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9128:6513-6680 | - | 2,356 | 5.17 | UGGAGAUAAGUAGAGAUAGACAG | | siRNA23 | ShortStack |
| gba-b1.0r1-66771 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9157:116883-116934 | - | 228 | 0.50 | UGAAAGAUCUGAAUGAGGGCAUU | | siRNA23 | ShortStack |
| gba-b1.0r1-66992 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9250:159093-159188 | + | 27,573 | 60.53 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| gba-b1.0r1-67332 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9385:304071-304207 | + | 4,849 | 10.65 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| gba-MIRC8a-m1 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9409:234960-235106 | - | 1 | 0.00 | AAGGACGAAAUCGUAAUUGAUUA | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-67493 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9434:77109-77150 | + | 352 | 0.77 | AAGGUGUGGGAGGUGUCUGGGUU | | siRNA23 | ShortStack |
| gba-b1.0r1-67559 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9462:458045-458068 | - | 590 | 1.30 | GUAGGAUAAACUUCUAAACGCCU | | siRNA23 | ShortStack |
| gba-b1.0r1-67926 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold953:696282-696319 | - | 1,119 | 2.46 | AUCGAAUGACUAUUCAUCUACUG | | siRNA23 | ShortStack |
| gba-b1.0r1-68145 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold959:229491-229542 | + | 530 | 1.16 | UUGGAUUCGACUCGAAUUAGCCU | | siRNA23 | ShortStack |
| gba-MIR7504r-m2 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold962:60033-60175 | + | 5 | 0.01 | UGGAAAGGGAUACAGAUGACGUC | | siRNA23 | Hu_et_al_2015 |
| gba-b1.0r1-69058 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9801:2679-2818 | + | 350 | 0.77 | CAUACACUCCUCUGCCAAGUAUC | | siRNA23 | ShortStack |
| gba-b1.0r1-69260 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold987:266802-266857 | + | 1,045 | 2.29 | UUUCUCGAGAAUUAUGAACGCCA | | siRNA23 | ShortStack |
Data from Lunardon et al. (2020)