het siRNAsData from Lunardon et al. (2020)miRNA

Genome and annotations summary

Arabidopsis thaliana (thale cress) genome build 10 (ath-b10)

TAIR10 assembly of Arabidopsis thaliana Col-0 ecotype from Phytozome.

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Download genome assembly FASTA file

BLAST search


Small RNA Loci

Click links below to show sub-sets of annotations

ShortStackmiRBaseTAS_loci
MIRNA801430
nearMIRNA680
siRNA201200
siRNA212486324
siRNA222330
siRNA232320
siRNA2411,349750
OtherRNA8,388273
NotExpressed040


Small RNA-seq data

Reference Set

accessionaligned readsunaligned readssource dbis refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.tissueecotype / cultivargenotypereplicate id Alignments that are biological replicates have the same replicate idsrefset id If set, the alignment is part of the indicated reference setdescription
ath-b10r1328,883,270374,736x1mixedcol-0wild-typeref1Reference set - merge of 28 libraries

Invidiual alignments (28)