het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Arabidopsis thaliana (thale cress) genome build 10 (ath-b10)

TAIR10 assembly of Arabidopsis thaliana Col-0 ecotype from Phytozome.

Locus type


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Annotation source

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NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ath-b10r1-19884Arabidopsis thaliana (thale cress) 101:28568610-28569159+9,33628.36UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
ath-b10r1-19979Arabidopsis thaliana (thale cress) 101:29421956-29423212+23,35670.94UUCGAUGUCUAGCAGUGCCAmiR775siRNA20ShortStack
ath-b10r1-4926Arabidopsis thaliana (thale cress) 102:8412391-8412701-2,8798.74CGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
ath-b10r1-5392Arabidopsis thaliana (thale cress) 102:10676282-10676730-379,8951,153.79UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
ath-b10r1-6050Arabidopsis thaliana (thale cress) 102:15122609-15123123+1730.53AUCCUUAACUCUAGCAAAAGsiRNA20ShortStack
ath-b10r1-6556Arabidopsis thaliana (thale cress) 102:18994612-18994941+28,51286.60UUUGGAUUGAAGGGAGCUCCmiR159siRNA20ShortStack
ath-b10r1-7126Arabidopsis thaliana (thale cress) 103:3366072-3366482-2,791,1478,477.08UCCCAAAUGUAGACAAAGCAmiR158siRNA20ShortStack
ath-b10r1-1732Arabidopsis thaliana (thale cress) 104:7907592-7908069+4821.46GACUCUAUGUAGACUGGACUsiRNA20ShortStack
ath-b10r1-2726Arabidopsis thaliana (thale cress) 104:14736995-14737157+8592.61UUCCACAGCUUCUUGAACUUsiRNA20ShortStack
ath-b10r1-2771Arabidopsis thaliana (thale cress) 104:15074642-15075073+330,7111,004.41UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
ath-b10r1-2804Arabidopsis thaliana (thale cress) 104:15415138-15415670-231,238702.30UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
ath-b10r1-11037Arabidopsis thaliana (thale cress) 105:3456638-3457144-1,893,2255,749.97UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack