het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Arabidopsis thaliana (thale cress) genome build 10 (ath-b10)

TAIR10 assembly of Arabidopsis thaliana Col-0 ecotype from Phytozome.

Locus type


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Annotation source

Name contains:

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NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ath-b10r1-16123Arabidopsis thaliana (thale cress) 101:6740313-6740677+4551.38UUAAAGUCAAUAAUACCUUGAAmiR864siRNA22ShortStack
ath-b10r1-16823Arabidopsis thaliana (thale cress) 101:11137822-11137904+3,84111.67UGUGUUUAUAGAUAGUAGUACUmiR167siRNA22ShortStack
ath-MIR856Arabidopsis thaliana (thale cress) 101:11957460-11957730+4821.46UAAUCCUACCAAUAACUUCAGCmiR856siRNA22miRBase
ath-b10r1-19015Arabidopsis thaliana (thale cress) 101:22795500-22796699+6,25018.98UCUAAGUCUUCUAUUGAUGUUCmiR776siRNA22ShortStack
ath-b10r1-3453Arabidopsis thaliana (thale cress) 102:770359-771728-4,35113.22ACACUGAAGGACCUAAACUAACmiR840siRNA22ShortStack
ath-b10r1-5303Arabidopsis thaliana (thale cress) 102:10246235-10247442+7322.22UGAUCUCUUCGUACUCUUCUUGmiR831siRNA22ShortStack
ath-MIR5637Arabidopsis thaliana (thale cress) 102:12270179-12270373-1,7065.18AAUGCGCAACUCUAUAUUUCCmiR5637siRNA22miRBase
ath-b10r1-5642Arabidopsis thaliana (thale cress) 102:12270179-12270447-1,7075.18AAUGCGCAACUCUAUAUUUCCmiR5637siRNA22ShortStack
ath-b10r1-6305Arabidopsis thaliana (thale cress) 102:17029526-17029897+96,349292.63UUGGACUGAAGGGAGCUCCUUCmiR319siRNA22ShortStack
ath-b10r1-6922Arabidopsis thaliana (thale cress) 103:1963250-1971156.1,259,1433,824.18UGACGAGAGAACUUAUUGGCCUsiRNA22ShortStack
ath-b10r1-7885Arabidopsis thaliana (thale cress) 103:8346392-8346438+1910.58UCCCCUCUUUAGCUUGGAGAAGmiR853siRNA22ShortStack
ath-b10r1-8021Arabidopsis thaliana (thale cress) 103:9106230-9108515.4161.26UGGUCCACACUUAGAAACUGUsiRNA22ShortStack
ath-b10r1-8169Arabidopsis thaliana (thale cress) 103:9871955-9872571-4,86114.76UAGCCAAGGAUGACUUGCCUGAmiR169siRNA22ShortStack
ath-b10r1-8173Arabidopsis thaliana (thale cress) 103:9878005-9878769-2,2326.78UAGCCAAGGAUGACUUGCCUGAmiR169siRNA22ShortStack
ath-b10r1-8222Arabidopsis thaliana (thale cress) 103:10119268-10120427.3020.92CAUCGCCGAGAUCGAGAAUCUCsiRNA22ShortStack
ath-b10r1-684Arabidopsis thaliana (thale cress) 104:2625935-2626360+8,42825.60UCAUUGAGUGCAGCGUUGAUGUmiR397siRNA22ShortStack
ath-MIR850Arabidopsis thaliana (thale cress) 104:7845707-7845927+14,60344.35UCAGCUAAGAUCCGGACUACAAmiR850siRNA22miRBase
ath-b10r1-1728Arabidopsis thaliana (thale cress) 104:7902189-7902765-1930.59UGACCUUGAAUUUCUUGACAAGsiRNA22ShortStack
ath-b10r1-1826Arabidopsis thaliana (thale cress) 104:8504136-8504443-87,360265.32UUCUUCGUGAAUAUCUGGCAUUmiR780siRNA22ShortStack
ath-b10r1-2084Arabidopsis thaliana (thale cress) 104:10098160-10098182-1,3424.08AGUUACUAAUUCAUGAUGUGGCsiRNA22ShortStack
ath-b10r1-2506Arabidopsis thaliana (thale cress) 104:13034981-13035450-9642.93AUCGCUGAUACCUCUUUUCUAGsiRNA22ShortStack
ath-b10r1-2871Arabidopsis thaliana (thale cress) 104:15971120-15971226.5081.54UCUUCGUCGUCGUCUAGGUCGGsiRNA22ShortStack
ath-b10r1-11419Arabidopsis thaliana (thale cress) 105:6104743-6104989-4181.27UUGCUUCGUCUGAUCUUUCCAGsiRNA22ShortStack
ath-b10r1-13273Arabidopsis thaliana (thale cress) 105:15166549-15167019.1670.51UUAGCUUCGGUAUAAACACAUUsiRNA22ShortStack
ath-b10r1-13877Arabidopsis thaliana (thale cress) 105:18093191-18093636-2550.77AGAGGGGGACACGUGUAGUGAAsiRNA22ShortStack
ath-b10r1-14695Arabidopsis thaliana (thale cress) 105:23504930-23505140-7122.16AGGAAACUGGAAAAUAAGUCUCsiRNA22ShortStack