Data from Lunardon et al. (2020)
Data from Lunardon et al. (2020)Version AGPv4 of Zea Mays cv. B73 from Ensembl Plants
Click links below to show sub-sets of annotations
| ShortStack | miRBase21 | Dotto_et_al_2014 | |
| MIRNA | 103 | 110 | 0 |
| nearMIRNA | 109 | 3 | 0 |
| siRNA20 | 99 | 4 | 0 |
| siRNA21 | 1,384 | 9 | 9 |
| siRNA22 | 5,067 | 1 | 0 |
| siRNA23 | 94 | 1 | 0 |
| siRNA24 | 109,050 | 5 | 0 |
| OtherRNA | 13,254 | 22 | 0 |
| NotExpressed | 0 | 0 | 0 |
| accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
|---|---|---|---|---|---|---|---|---|---|---|
| maize_all_reference_set | 1,296,679,992 | 1,028,967,066 | none | 1 | mixed | mixed | wt | refset1 | 1 | merge of 112 libraries - reference set 1 |
| accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
|---|---|---|---|---|---|---|---|---|---|---|
| SRR3151733 | 7,670,748 | 2,311,954 | SRA | 0 | leaf | B73 | wt | A | 1 | leaf n.5 (V5 stage) - control conditions |
| SRR3151734 | 6,597,980 | 1,780,399 | SRA | 0 | leaf | B73 | wt | A | 1 | leaf n.5 (V5 stage) - control conditions |
| SRR3151735 | 5,761,906 | 2,438,116 | SRA | 0 | leaf | B73 | wt | A | 1 | leaf n.5 (V5 stage) - control conditions |
| SRR2155397 | 50,569,545 | 14,206,876 | SRA | 0 | shoot | B73 | wt | AA | 1 | aboveground seedling (14-days-old plants) - control conditions |
| SRR2155403 | 25,521,097 | 7,222,498 | SRA | 0 | root | B73 | wt | AB | 1 | root (14-days-old plants) - control conditions |
| SRR357417 | 9,545,118 | 3,185,167 | SRA | 0 | seedling | B73 | wt | AC | 1 | seedling (14-days-old plants) - control conditions |
| SRR357418 | 7,732,528 | 3,078,479 | SRA | 0 | seedling | B73 | wt | AD | 1 | seedling (14-days-old plants) - drought stress |
| SRR357419 | 7,950,048 | 3,617,577 | SRA | 0 | seedling | B73 | wt | AE | 1 | seedling (14-days-old plants) - cold stress |
| SRR357420 | 8,336,887 | 2,716,883 | SRA | 0 | seedling | B73 | wt | AF | 1 | seedling (14-days-old plants) - salt stress |
| SRR408793 | 40,134,516 | 13,472,952 | SRA | 0 | ear | B73 | wt | AG | 1 | unfertilized ears harvested after silks had emerged - control conditions |
| SRR488774 | 23,282,797 | 8,863,717 | SRA | 0 | shoot apical meristematic area | B73 | wt | AH | 1 | shoot apical meristematic area (11-days-old plants) - control conditions |
| SRR488776 | 3,282,720 | 998,734 | SRA | 0 | ear | B73 | wt | AI | 1 | top developing ear (V12 stage - at the time when the 12th leaf had fully expanded) - control conditions |
| SRR488779 | 2,535,870 | 786,131 | SRA | 0 | ear | B73 | wt | AJ | 1 | top developing ear (V12 stage - at the time when the 12th leaf had fully expanded) - low nitrogen |
| SRR490839 | 7,410,936 | 2,706,296 | SRA | 0 | leaf | B73 | wt | AK | 1 | leaf (3-weeks-old plants) - control conditions |
| SRR490840 | 6,713,479 | 3,566,071 | SRA | 0 | seed | B73 | wt | AL | 1 | mix of immature seeds at 10 - 15 - 20 - 25 and 30 DAP - control conditions |
| SRR521124 | 12,753,902 | 8,011,860 | SRA | 0 | shoot | B73 | wt | AM | 1 | shoot (5-days-old plants) - control conditions |
| SRR521125 | 9,237,880 | 6,168,539 | SRA | 0 | shoot | B73 | wt | AM | 1 | shoot (5-days-old plants) - control conditions |
| SRX159595 | 10,360,933 | 3,717,744 | SRA | 0 | shoot | B73 | wt | AM | 1 | shoot (5-days-old plants) - control conditions |
| SRR640303 | 3,717,390 | 3,076,851 | SRA | 0 | shoot | B73 | wt | AN | 1 | seedling shoot (14-days-old plants) - control conditions |
| SRR640304 | 3,212,841 | 4,231,350 | SRA | 0 | root | B73 | wt | AO | 1 | seedling root (14-days-old plants) - control conditions |
| SRR768248 | 2,812,814 | 3,250,601 | SRA | 0 | pollen | B73 | wt | AP | 1 | mature pollen - control conditions |
| SRR768249 | 5,233,173 | 5,621,540 | SRA | 0 | pollen | B73 | wt | AQ | 1 | in-vitro germinated pollen (after culturing mature pollen for 30 min in liquid medium) - control conditions |
| SRR768250 | 6,452,843 | 2,387,895 | SRA | 0 | silk | B73 | wt | AR | 1 | mature silk (extending approximately 5 cm beyond the bracts) - control conditions |
| SRR768251 | 6,215,721 | 1,784,715 | SRA | 0 | silk | B73 | wt | AS | 1 | pollinated silk - control conditions |
| SRR768485 | 8,812,014 | 5,398,167 | SRA | 0 | root | B73 | wt | AT | 1 | root (15-days-old plants) - control conditions |
| SRR768487 | 8,805,429 | 3,993,599 | SRA | 0 | root | B73 | wt | AU | 1 | root (15-days-old plants) - low nitrate |
| SRR768489 | 9,680,090 | 3,289,442 | SRA | 0 | shoot | B73 | wt | AV | 1 | shoot (15-days-old plants) - low nitrate |
| SRR768492 | 7,986,387 | 2,803,975 | SRA | 0 | shoot | B73 | wt | AW | 1 | shoot (15-days-old plants) - control conditions |
| SRR895785 | 6,476,995 | 4,896,773 | SRA | 0 | ear | B73 | wt | AX | 1 | mixed ears at the growth point elongation - spikelet differentiation - floret primordium differentiation and floret organ differentiation phase - control conditions |
| SRR924284 | 34,032,219 | 14,283,328 | SRA | 0 | leaf | B73 | wt | AY | 1 | seedling leaf - control conditions |
| SRR962471 | 8,867,950 | 4,259,813 | SRA | 0 | shoot apical meristematic area | B73 | wt | AZ | 1 | shoot apical meristematic area (2-week-old plants) - control conditions |
| SRR962473 | 4,156,421 | 2,709,530 | SRA | 0 | shoot apical meristematic area | B73 | wt | AZ | 1 | shoot apical meristematic area (2-week-old plants) - control conditions |
| SRR962475 | 3,801,499 | 2,216,114 | SRA | 0 | shoot apical meristematic area | B73 | wt | AZ | 1 | shoot apical meristematic area (2-week-old plants) - control conditions |
| SRR3151736 | 5,342,690 | 2,238,149 | SRA | 0 | leaf | B73 | wt | B | 1 | wrapped leaf n.6 (V5 stage) - control conditions |
| SRR3151737 | 7,775,160 | 2,893,432 | SRA | 0 | leaf | B73 | wt | B | 1 | wrapped leaf n.6 (V5 stage) - control conditions |
| SRX1564781 | 17,549,822 | 5,593,630 | SRA | 0 | leaf | B73 | wt | B | 1 | wrapped leaf n.6 (V5 stage) - control conditions |
| SRR1660512 | 61,053,907 | 22,503,568 | SRA | 0 | leaf | B73 | wt | BO | 1 | leaf n. 3 (7-day-old plants cultured in dark) mix of 8 samples: before illumination - 0.5 - 1 - 3 - 6 - 12 and 24 h after illumination and control 16h light/8-h night cycle |
| SRR3684389 | 8,972,018 | 4,398,559 | SRA | 0 | endosperm | B73 | wt | BP | 1 | endosperm (10 days after pollination) - immersed in 1/2 MS with sucrose |
| SRR3684242 | 7,363,505 | 5,864,862 | SRA | 0 | endosperm | B73 | wt | BQ | 1 | endosperm (10 days after pollination) - immersed in 1/2 MS with mannose - an osmotic control |
| SRR3151741 | 5,775,149 | 4,703,030 | SRA | 0 | pollen | B73 | wt | C | 1 | mature pollen - control conditions |
| SRR3151742 | 6,309,688 | 4,041,456 | SRA | 0 | pollen | B73 | wt | C | 1 | mature pollen - control conditions |
| SRR3151743 | 7,633,750 | 4,645,993 | SRA | 0 | pollen | B73 | wt | C | 1 | mature pollen - control conditions |
| SRR1028945 | 5,896,004 | 7,462,205 | SRA | 0 | anther | W23 | wt | CA | 1 | anther (0.2mm) - control conditions |
| SRR1028956 | 9,918,979 | 12,470,364 | SRA | 0 | anther | W23 | wt | CA | 1 | anther (0.2mm) - control conditions |
| SRR1028946 | 20,252,848 | 17,957,594 | SRA | 0 | anther | W23 | wt | CB | 1 | anther (0.4mm) - control conditions |
| SRR1028957 | 22,360,453 | 18,418,589 | SRA | 0 | anther | W23 | wt | CB | 1 | anther (0.4mm) - control conditions |
| SRR1028967 | 16,519,026 | 8,862,681 | SRA | 0 | anther | W23 | wt | CB | 1 | anther (0.4mm) - control conditions |
| SRR1028947 | 12,898,071 | 22,218,896 | SRA | 0 | anther | W23 | wt | CC | 1 | anther (0.7mm) - control conditions |
| SRR1028958 | 25,739,428 | 19,798,084 | SRA | 0 | anther | W23 | wt | CC | 1 | anther (0.7mm) - control conditions |
| SRR1028968 | 14,611,550 | 7,366,811 | SRA | 0 | anther | W23 | wt | CC | 1 | anther (0.7mm) - control conditions |
| SRR1028948 | 14,939,961 | 26,305,074 | SRA | 0 | anther | W23 | wt | CD | 1 | anther (1mm) - control conditions |
| SRR1028959 | 16,443,293 | 23,594,693 | SRA | 0 | anther | W23 | wt | CD | 1 | anther (1mm) - control conditions |
| SRR1028969 | 20,480,887 | 10,700,391 | SRA | 0 | anther | W23 | wt | CD | 1 | anther (1mm) - control conditions |
| SRR1028949 | 17,783,808 | 19,392,031 | SRA | 0 | anther | W23 | wt | CE | 1 | anther (1.5mm) - control conditions |
| SRR1028960 | 15,612,095 | 14,678,848 | SRA | 0 | anther | W23 | wt | CE | 1 | anther (1.5mm) - control conditions |
| SRR1028970 | 19,347,287 | 7,804,242 | SRA | 0 | anther | W23 | wt | CE | 1 | anther (1.5mm) - control conditions |
| SRR1028950 | 21,554,463 | 18,446,517 | SRA | 0 | anther | W23 | wt | CF | 1 | anther (2mm) - control conditions |
| SRR1028961 | 24,051,461 | 29,492,293 | SRA | 0 | anther | W23 | wt | CF | 1 | anther (2mm) - control conditions |
| SRR1028971 | 20,447,085 | 12,957,835 | SRA | 0 | anther | W23 | wt | CF | 1 | anther (2mm) - control conditions |
| SRR1028951 | 25,956,169 | 37,838,978 | SRA | 0 | anther | W23 | wt | CG | 1 | anther (2.5mm) - control conditions |
| SRR1028962 | 24,468,322 | 27,891,524 | SRA | 0 | anther | W23 | wt | CG | 1 | anther (2.5mm) - control conditions |
| SRR1028972 | 19,245,640 | 16,120,743 | SRA | 0 | anther | W23 | wt | CG | 1 | anther (2.5mm) - control conditions |
| SRR1028952 | 11,742,184 | 20,770,744 | SRA | 0 | anther | W23 | wt | CH | 1 | anther (3mm) - control conditions |
| SRR1028963 | 11,246,250 | 18,074,000 | SRA | 0 | anther | W23 | wt | CH | 1 | anther (3mm) - control conditions |
| SRR1028973 | 13,677,544 | 20,341,239 | SRA | 0 | anther | W23 | wt | CH | 1 | anther (3mm) - control conditions |
| SRR1028953 | 15,276,377 | 31,770,882 | SRA | 0 | anther | W23 | wt | CI | 1 | anther (4mm) - control conditions |
| SRR1028964 | 11,273,139 | 18,538,360 | SRA | 0 | anther | W23 | wt | CI | 1 | anther (4mm) - control conditions |
| SRR1028974 | 14,836,709 | 19,025,128 | SRA | 0 | anther | W23 | wt | CI | 1 | anther (4mm) - control conditions |
| SRR1028954 | 11,419,905 | 20,583,732 | SRA | 0 | anther | W23 | wt | CJ | 1 | anther (5mm) - control conditions |
| SRR1028965 | 7,086,483 | 23,335,007 | SRA | 0 | anther | W23 | wt | CJ | 1 | anther (5mm) - control conditions |
| SRR1028975 | 9,722,569 | 23,650,914 | SRA | 0 | anther | W23 | wt | CJ | 1 | anther (5mm) - control conditions |
| SRR1028955 | 9,460,428 | 24,723,547 | SRA | 0 | anther | W23 | wt | CK | 1 | anther (mature pollen) - control conditions |
| SRR1028966 | 8,951,138 | 30,599,791 | SRA | 0 | anther | W23 | wt | CK | 1 | anther (mature pollen) - control conditions |
| SRR1028976 | 6,258,069 | 23,575,562 | SRA | 0 | anther | W23 | wt | CK | 1 | anther (mature pollen) - control conditions |
| SRR1041542 | 15,608,141 | 10,919,027 | SRA | 0 | tassel | A619 | wt | CL | 1 | tassel primordia (0.5-1 cm) - control conditions |
| SRR1041543 | 16,242,099 | 24,501,910 | SRA | 0 | tassel | A619 | wt | CL | 1 | tassel primordia (0.5-1 cm) - control conditions |
| SRR1041544 | 13,563,299 | 19,217,882 | SRA | 0 | tassel | A619 | wt | CL | 1 | tassel primordia (0.5-1 cm) - control conditions |
| SRR899547 | 2,001,458 | 3,138,382 | SRA | 0 | seedling | UENF 506-8 | wt | CM | 1 | seedling (7-days-old plants) - after 7 days inoculation with the diazotrophic bacterium H. seropedicae (HRC54) |
| SRR1199373 | 2,644,233 | 3,964,565 | SRA | 0 | seedling | UENF 506-8 | wt | CM | 1 | seedling (7-days-old plants) - after 7 days inoculation with the diazotrophic bacterium H. seropedicae (HRC54) |
| SRR1199372 | 10,449,947 | 16,613,110 | SRA | 0 | seedling | UENF 506-8 | wt | CN | 1 | seedling (7-days-old plants) - after 7 days in control conditions |
| SRR3151744 | 3,494,494 | 2,527,866 | SRA | 0 | embryo | B73 | wt | D | 1 | embryo - 21-27 DAP - control conditions |
| SRR2947005 | 21,523,155 | 5,544,111 | SRA | 0 | shoot apical meristematic area | B73 | wt | E | 1 | shoot apical meristematic area - meristem and a few surrounding developing leaves (V6/V7 stage) - control conditions |
| SRR2947006 | 24,034,859 | 6,487,959 | SRA | 0 | shoot apical meristematic area | B73 | wt | E | 1 | shoot apical meristematic area - meristem and a few surrounding developing leaves (V6/V7 stage) - control conditions |
| SRR2947007 | 28,321,795 | 6,937,383 | SRA | 0 | shoot apical meristematic area | B73 | wt | F | 1 | shoot apical meristematic area - meristem and a few surrounding developing leaves (V6/V7 stage) - drought stress |
| SRR2947008 | 21,235,969 | 6,857,387 | SRA | 0 | shoot apical meristematic area | B73 | wt | F | 1 | shoot apical meristematic area - meristem and a few surrounding developing leaves (V6/V7 stage) - drought stress |
| SRR2086100 | 8,334,250 | 3,339,737 | SRA | 0 | leaf | B73 | wt | G | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - control conditions |
| SRR2086116 | 4,179,930 | 1,773,985 | SRA | 0 | leaf | B73 | wt | G | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - control conditions |
| SRR2086132 | 5,445,651 | 2,269,212 | SRA | 0 | leaf | B73 | wt | G | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - control conditions |
| SRR2086101 | 8,943,262 | 3,149,331 | SRA | 0 | leaf | B73 | wt | H | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - drought stress |
| SRR2086117 | 3,441,098 | 1,715,287 | SRA | 0 | leaf | B73 | wt | H | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - drought stress |
| SRR2086133 | 3,874,732 | 1,510,271 | SRA | 0 | leaf | B73 | wt | H | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - drought stress |
| SRR2086102 | 5,589,198 | 2,721,102 | SRA | 0 | leaf | B73 | wt | I | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - salt stress |
| SRR2086118 | 6,367,154 | 2,483,344 | SRA | 0 | leaf | B73 | wt | I | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - salt stress |
| SRR2086134 | 5,247,709 | 2,194,136 | SRA | 0 | leaf | B73 | wt | I | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - salt stress |
| SRR2086103 | 8,958,312 | 3,708,544 | SRA | 0 | leaf | B73 | wt | J | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - drought + salt stress |
| SRR2086119 | 4,814,991 | 1,982,421 | SRA | 0 | leaf | B73 | wt | J | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - drought + salt stress |
| SRR2086135 | 4,366,936 | 1,832,688 | SRA | 0 | leaf | B73 | wt | J | 1 | last visible wrapped leaf - n.9-10 (V6/V7 stage) - drought + salt stress |
| SRR2086104 | 7,136,128 | 3,483,584 | SRA | 0 | leaf | B73 | wt | K | 1 | last visible wrapped leaf - n.11 (V8 stage) - control conditions |
| SRR2086120 | 3,328,805 | 1,740,648 | SRA | 0 | leaf | B73 | wt | K | 1 | last visible wrapped leaf - n.11 (V8 stage) - control conditions |
| SRR2086136 | 4,369,414 | 1,901,395 | SRA | 0 | leaf | B73 | wt | K | 1 | last visible wrapped leaf - n.11 (V8 stage) - control conditions |
| GSM381716 | 2,229,184 | 2,097,890 | GEO | 0 | shoot | B73 | wt | O | 1 | seedling shoot (14-days-old plants) - control conditions |
| SRR032087 | 3,263,789 | 1,100,766 | SRA | 0 | ear | B73 | wt | P | 1 | immature ear (size 0.5 _ 2cm) - control conditions |
| SRR032088 | 5,085,175 | 3,557,592 | SRA | 0 | pollen | B73 | wt | Q | 1 | pollen - control conditions |
| SRR032089 | 5,297,112 | 2,520,219 | SRA | 0 | root | B73 | wt | R | 1 | root (3-days-old plants) - control conditions |
| SRR032090 | 5,320,929 | 2,841,088 | SRA | 0 | seedling | B73 | wt | S | 1 | seedling (7-days-old plants) - control conditions |
| SRR032091 | 5,918,320 | 2,440,050 | SRA | 0 | tassel | B73 | wt | T | 1 | immature tassel (size 0.5_2.5cm) - control conditions |
| SRR034096 | 2,198,408 | 1,028,781 | SRA | 0 | leaf | B73 | wt | U | 1 | young leaf (6-weeks-old plants) - control conditions |
| SRR034097 | 2,235,078 | 1,032,516 | SRA | 0 | ear | B73 | wt | V | 1 | ear (10-11-weeks-old plants; post-meiotic stage; 3-5 cm long with silks about 1-4 cm long) - control conditions |
| SRR034098 | 2,407,468 | 902,835 | SRA | 0 | tassel | B73 | wt | W | 1 | tassel (8-weeks-old plants; pre-meiotic stage; ranged in length between 2-4 cm long) - control conditions |
| SRR1583944 | 11,405,510 | 4,427,204 | SRA | 0 | ear | B73 | wt | Y | 1 | developing ear (4-6 cm stage) - control conditions |
| SRR1917157 | 8,229,000 | 11,047,863 | SRA | 0 | embryo | B73 | wt | Z | 1 | embryo (24 hr imbibed seeds) - control conditions |
| SRR1917158 | 6,657,010 | 8,751,331 | SRA | 0 | embryo | B73 | wt | Z | 1 | embryo (24 hr imbibed seeds) - control conditions |