het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Zea mays (Maize) genome build 4 (zma-b4)

Version AGPv4 of Zea Mays cv. B73 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
zma-b4r1-3503Zea mays (Maize) 41:41899829-41899858+1720.07AGGAUUAACCGAACAAGGCCUUAGnearMIRNAShortStack
zma-b4r1-3892Zea mays (Maize) 41:47395627-47395654-9920.43GUACCUCGGCGCCGUAGAUCUCGGnearMIRNAShortStack
zma-b4r1-5890Zea mays (Maize) 41:77740341-77740529+2,4001.03AACCCGAACCGAACCUGAAUAGACnearMIRNAShortStack
zma-b4r1-6274Zea mays (Maize) 41:83719860-83719950-1,0640.46UAAGGAACCGCAUGUAGAAAUnearMIRNAShortStack
zma-b4r1-6771Zea mays (Maize) 41:93083066-93083108+2,0640.89AUGGGAGACUUCGCUCGGCGGAnearMIRNAShortStack
zma-b4r1-13503Zea mays (Maize) 41:228779561-228779583+5380.23UAUAGAAAUGUCAAAACGCCUnearMIRNAShortStack
zma-b4r1-13648Zea mays (Maize) 41:230444553-230444573-1770.08AAUUUAGGUACUAAAAUGGGAnearMIRNAShortStack
zma-b4r1-14050Zea mays (Maize) 41:235939792-235939815-5440.23UUAGAUUAUAGUAGAAGAGUAnearMIRNAShortStack
zma-b4r1-15317Zea mays (Maize) 41:253472978-253473030+1,1070.48ACGGAGUGGUAGGGGAGGGUAUGnearMIRNAShortStack
zma-b4r1-16543Zea mays (Maize) 41:269977250-269977444+4,4751.92UAUACACUGUAUUAGGGAUGAAGAnearMIRNAShortStack
zma-b4r1-16925Zea mays (Maize) 41:274817476-274817689+8,9283.84CGCCCCGCAUCCCCAUCCCGCCnearMIRNAShortStack
zma-b4r1-17735Zea mays (Maize) 41:285130489-285130763-8,2873.56UCGAGACCGACCGGAAGGAUUCnearMIRNAShortStack
zma-b4r1-18190Zea mays (Maize) 41:289769143-289769352+3,5371.52AUAACAAGUACUGUAGUUGCUnearMIRNAShortStack
zma-b4r1-18540Zea mays (Maize) 41:294149566-294149588+10,0014.30UUUUUUUCAAAAAGUCGAACUnearMIRNAShortStack
zma-b4r1-18671Zea mays (Maize) 41:295932831-295933047+3,3371.44ACCCUAGGAACCGUCGGAAAUAGUnearMIRNAShortStack
zma-b4r1-19314Zea mays (Maize) 41:303772026-303772048+1,1340.49UAGCCAGGGAUGAUUUGCCUGUmiR169nearMIRNAShortStack
zma-b4r1-21334Zea mays (Maize) 410:33365986-33366071-1,2060.52UGGCAAAACUGUGAAGCGCGAnearMIRNAShortStack
zma-b4r1-21683Zea mays (Maize) 410:47087197-47087390+5,4982.36UUUCAAUCAUCGACUUCGGCUUnearMIRNAShortStack
zma-b4r1-22637Zea mays (Maize) 410:72921902-72922142+6,5722.83ACCGAGAGUAGGACUUUGCCGAGUnearMIRNAShortStack
zma-b4r1-23241Zea mays (Maize) 410:83529063-83529086-590.03AUAUUUAGCGACUAACCGUGGGUUnearMIRNAShortStack
zma-b4r1-26203Zea mays (Maize) 410:130425402-130425429-5040.22ACUUGGAUGAGAAAUGAAGGCACCnearMIRNAShortStack
zma-b4r1-27102Zea mays (Maize) 410:139790237-139790529-9460.41GAGAAACAUUGUUUGGAUAGGACGnearMIRNAShortStack
zma-b4r1-38241Zea mays (Maize) 42:180812350-180812373-770.03ACGGAUAAGGUUUGAGUAGAUAUCnearMIRNAShortStack
zma-b4r1-38552Zea mays (Maize) 42:184642433-184642671+2,4121.04ACCAAACACAGAACAGAACGGCUCnearMIRNAShortStack
zma-b4r1-38779Zea mays (Maize) 42:188135930-188135953-5340.23ACAGGUUGUGACACUGGACCGGGAnearMIRNAShortStack
zma-b4r1-39153Zea mays (Maize) 42:191929539-191929680+8630.37AAUUCUAAUGAUCCAAAUGGACCUnearMIRNAShortStack
zma-b4r1-39705Zea mays (Maize) 42:198502078-198502163-2,0690.89AUGUUAACGCCCGGGUUUUGGACCnearMIRNAShortStack
zma-b4r1-40368Zea mays (Maize) 42:206326762-206326785-5320.23UGCCUUGACUAUCUGUAAAGnearMIRNAShortStack
zma-b4r1-40440Zea mays (Maize) 42:207663485-207663684-9230.40AUUUUUGGCGACCGAGCUCUGGCCnearMIRNAShortStack
zma-b4r1-47501Zea mays (Maize) 43:55581650-55581676+3470.15UAUCACAAGCGGUUUUAGAUUnearMIRNAShortStack
zma-b4r1-48321Zea mays (Maize) 43:84304770-84304796+4540.20AUAGCAUUUGAGAACAAGUCCCCUnearMIRNAShortStack
zma-MIR166lZea mays (Maize) 43:91435335-91435471+597,632256.98UCGGACCAGGCUUCAUUCCUCmiR166nearMIRNAmiRBase21
zma-b4r1-48684Zea mays (Maize) 43:99839307-99839583-2,4801.07AGAGAAUCUUGCUGACGUGGCUGCnearMIRNAShortStack
zma-b4r1-49121Zea mays (Maize) 43:113514565-113514677+2,5431.09GAGGGGACUGGGCUUUGAGAAnearMIRNAShortStack
zma-b4r1-50590Zea mays (Maize) 43:145801722-145801760+4,7312.03GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
zma-b4r1-51748Zea mays (Maize) 43:165680095-165680162+3400.15AAAGCAUAGGCUGUAGGUCCUAGCnearMIRNAShortStack
zma-b4r1-52286Zea mays (Maize) 43:173620206-173620292+8900.38AAUUCCCGUCGGCCACCUGACnearMIRNAShortStack
zma-b4r1-54137Zea mays (Maize) 43:195551303-195551322-3040.13UGUGGAGCAGGAGCAGGAGCnearMIRNAShortStack
zma-b4r1-59006Zea mays (Maize) 44:13818156-13818201+1,9870.85UAGCCAAGAAUGACUUGCCUmiR169nearMIRNAShortStack
zma-b4r1-59111Zea mays (Maize) 44:15295189-15295210-7,3023.14AGAAUCCUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
zma-b4r1-59751Zea mays (Maize) 44:24634242-24634265-4150.18ACCGGACACUCCGAUGCACCCAGAnearMIRNAShortStack
zma-b4r1-60888Zea mays (Maize) 44:43663741-43663765-4940.21AGGACGCAUGUACUCUCAGGCACCnearMIRNAShortStack
zma-b4r1-61466Zea mays (Maize) 44:56199463-56199590-5,1312.21AAUCCCCCUCAAUCCACACCnearMIRNAShortStack
zma-b4r1-61656Zea mays (Maize) 44:60647207-60647228+8510.37UUGAGGACUAAACAUUAUUUnearMIRNAShortStack
zma-b4r1-61804Zea mays (Maize) 44:64819185-64819220+4800.21AUAGGUAUCUGAGUGCCCGGCGCCnearMIRNAShortStack
zma-b4r1-61861Zea mays (Maize) 44:65975259-65975281+2830.12AGAUUUGGAGGGGAUCCAUGGGnearMIRNAShortStack
zma-b4r1-61908Zea mays (Maize) 44:67479630-67479653-1900.08AUGGAUUAAGGUGAAUACAUAGGCnearMIRNAShortStack
zma-b4r1-62207Zea mays (Maize) 44:74748580-74748750+6430.28AACCGUCGAACUUAUCGUAUUAGAnearMIRNAShortStack
zma-b4r1-63992Zea mays (Maize) 44:132960229-132960393-3,2951.42UUCCGUUGAGACGCCGAGGACCnearMIRNAShortStack
zma-b4r1-64001Zea mays (Maize) 44:133164911-133165034+6860.30UAUGUACGAGGCCGUCGGAUAnearMIRNAShortStack
zma-b4r1-64196Zea mays (Maize) 44:138183545-138183628+1510.07AUAGAGUCCUGAACCCCCUAUCnearMIRNAShortStack
zma-b4r1-64380Zea mays (Maize) 44:142664347-142664417+1890.08UAGGUUUCUACACAUAGUGUAnearMIRNAShortStack
zma-b4r1-70524Zea mays (Maize) 44:233618452-233618472+3940.17UGCCAAAGGGGAUUUGCCCGGmiR399nearMIRNAShortStack
zma-b4r1-70803Zea mays (Maize) 44:237151374-237151507+1,5420.66CGCCUCGCAUCCCCAUCCCGCCnearMIRNAShortStack
zma-b4r1-70909Zea mays (Maize) 44:238816513-238816547+2690.12AUUCGUUUUGGAGUGGAUUGAGGGnearMIRNAShortStack
zma-b4r1-73139Zea mays (Maize) 45:11407168-11407404+2,9741.28AUUAGUCCGUAGAAACCAAACACUnearMIRNAShortStack
zma-b4r1-73574Zea mays (Maize) 45:15586376-15586549+8,7633.77CGCCCCGCAUCCCCAUCCCGCCnearMIRNAShortStack
zma-b4r1-73651Zea mays (Maize) 45:16285917-16285958+5820.25UCUGGAUCAAAGAAGGUUGGAGnearMIRNAShortStack
zma-b4r1-75230Zea mays (Maize) 45:38089904-38089927-1010.04AAGAGAAGCGCACAGAUGAAGUnearMIRNAShortStack
zma-b4r1-75417Zea mays (Maize) 45:41169309-41169365+4,9042.11AGCGGACUCUUGUCGGUGGGUnearMIRNAShortStack
zma-b4r1-77591Zea mays (Maize) 45:82694069-82694295+2,7431.18AGAGAAUCUUGCUGACGUGGCUGCnearMIRNAShortStack
zma-b4r1-78533Zea mays (Maize) 45:108195944-108195963+2990.13UGUGGAGCAGGAGCAGGAGCnearMIRNAShortStack
zma-b4r1-79868Zea mays (Maize) 45:150372109-150372131+3970.17UGCCAAAGGAGAGUUGCCCUGmiR399nearMIRNAShortStack
zma-b4r1-80783Zea mays (Maize) 45:168374448-168374708-7020.30AAUGGGAUUAACCGAACAAGGCCUnearMIRNAShortStack
zma-b4r1-80801Zea mays (Maize) 45:168617455-168617476+4810.21UAGCCAAGGAUGACUUGCCUAmiR169nearMIRNAShortStack
zma-b4r1-83213Zea mays (Maize) 45:200073414-200073667-1,0960.47AGUUGUAAUUUUCUGAUUCCGCCUnearMIRNAShortStack
zma-b4r1-83434Zea mays (Maize) 45:203250055-203250090-4770.21GUCACAGAAGUUGGGAUGCAAACUnearMIRNAShortStack
zma-b4r1-84706Zea mays (Maize) 45:216131816-216131985-35,02115.06GGAGAGAUGGCUGAGUGGUUGmiR3473nearMIRNAShortStack
zma-MIR172bZea mays (Maize) 45:221721349-221721474-1320.06GCAGCACCAUCAAGAUUCACAmiR172nearMIRNAmiRBase21
zma-b4r1-85606Zea mays (Maize) 46:218836-218973-7240.31ACGCGAGCUGGGACGCGGGCGCCUnearMIRNAShortStack
zma-b4r1-86350Zea mays (Maize) 46:17394646-17394673+1,5790.68AUGGGAGACUUCGCUCGGCGGAnearMIRNAShortStack
zma-b4r1-87102Zea mays (Maize) 46:33922037-33922077-9680.42AGGUUCCUCCUUUCCCCCUUCUUUnearMIRNAShortStack
zma-b4r1-89044Zea mays (Maize) 46:86830263-86830289+3640.16ACUUGGAUGAGAAAUGAAGGCACCnearMIRNAShortStack
zma-b4r1-89125Zea mays (Maize) 46:88270284-88270380-1,5900.68GCAUCAUAUGUGUGAGGCUUGGUCnearMIRNAShortStack
zma-b4r1-89304Zea mays (Maize) 46:91184731-91184769+2,2590.97UUAAAUCUGGACCCUUCAUCUnearMIRNAShortStack
zma-b4r1-93684Zea mays (Maize) 46:149977463-149977597+2,1340.92AUUGGGAUAGAACCGAACAAGCCUnearMIRNAShortStack
zma-b4r1-95247Zea mays (Maize) 46:163865494-163865584-2440.11GGGUUGGGUCUCCUCUGGCAGUnearMIRNAShortStack
zma-b4r1-95249Zea mays (Maize) 46:163867938-163867976+8840.38GGGUACGUCUCCUUUGGCACAmiR399nearMIRNAShortStack
zma-b4r1-95578Zea mays (Maize) 46:166804987-166805012+3940.17AGACUAAAGUAGAAUAAAAUGGAGnearMIRNAShortStack
zma-b4r1-96839Zea mays (Maize) 47:6260503-6260578-1,3410.58ACGGAGUGGUAGUGGAGGGUACUUnearMIRNAShortStack
zma-b4r1-99202Zea mays (Maize) 47:54276706-54276796-6,3802.74AGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
zma-b4r1-99225Zea mays (Maize) 47:55162693-55162712-3210.14UGUGGAGCAGGAGCAGGAGCnearMIRNAShortStack
zma-b4r1-99385Zea mays (Maize) 47:64070466-64070634+2,9581.27GUACGAGGCCGUCGGAGGUAAGGAnearMIRNAShortStack
zma-b4r1-100362Zea mays (Maize) 47:98994635-98994773-1,2090.52AUUGGGAGCUAACCGAACAAGCCUnearMIRNAShortStack
zma-b4r1-101243Zea mays (Maize) 47:116270585-116270758+2,0600.89ACAAUUCAGAAGCGGAUUGGAGGGnearMIRNAShortStack
zma-b4r1-101335Zea mays (Maize) 47:118414142-118414217-7190.31AAGAGAAGCGCACAGAUGAAGUnearMIRNAShortStack
zma-b4r1-102972Zea mays (Maize) 47:141619099-141619268-8,6853.73CAUGGAUUGAAAGUGAUUGAAnearMIRNAShortStack
zma-b4r1-103076Zea mays (Maize) 47:142900190-142900227+5640.24UGUUACCGAGAGUAGGACUUUGCCnearMIRNAShortStack
zma-b4r1-104060Zea mays (Maize) 47:155895941-155896040-2650.11CCCCUUGGGAAAUUGAGGUUCnearMIRNAShortStack
zma-b4r1-105715Zea mays (Maize) 47:173462472-173462682+9590.41UAGAUCUCGCCUCUCUGGUGGnearMIRNAShortStack
zma-b4r1-106048Zea mays (Maize) 47:176583542-176583668+9820.42AUCGGAAGGGGUUGAGGGGGAUnearMIRNAShortStack
zma-b4r1-108555Zea mays (Maize) 48:25127412-25127491+2,0030.86GGGGAUGGCGUCGUAGCUCGGnearMIRNAShortStack
zma-b4r1-110236Zea mays (Maize) 48:76224796-76224820+5110.22AUCUGGUGCGUUUAUGAGCAAUCCnearMIRNAShortStack
zma-b4r1-111059Zea mays (Maize) 48:96093894-96093937+1,3600.59UUGGUCCGUUAGAUUUAGAUCnearMIRNAShortStack
zma-b4r1-111389Zea mays (Maize) 48:101643870-101643891+2990.13AGAUUUGGAGGGGAUCCAUGGGnearMIRNAShortStack
zma-b4r1-113058Zea mays (Maize) 48:127671896-127671992+1,4480.62UGCAUCCUGACCGUCGAAAAnearMIRNAShortStack
zma-MIR169qZea mays (Maize) 48:130375286-130375391+7920.34CUUAGCCAAGAAUGGCUUGCCUmiR1430nearMIRNAmiRBase21
zma-b4r1-114014Zea mays (Maize) 48:142795527-142795550+1310.06UGCACUUUCCACUGGCGGUUUnearMIRNAShortStack
zma-b4r1-115483Zea mays (Maize) 48:161010119-161010416-12,0485.18AAAUAUGUGGACCAAACGGCACCCnearMIRNAShortStack
zma-b4r1-117266Zea mays (Maize) 48:176059094-176059215+1,4840.64AUGUUCGCACCCGGGCUUUGGACCnearMIRNAShortStack
zma-b4r1-117543Zea mays (Maize) 48:177495008-177495187-1,3530.58AUAGAUGAAGAAUAAACGACGAGAnearMIRNAShortStack
zma-b4r1-118309Zea mays (Maize) 49:4455895-4456063-1,5980.69AAUGGGAUUAACCGAACAAGGCCUnearMIRNAShortStack
zma-b4r1-120006Zea mays (Maize) 49:24766495-24766515+6150.26UCGGAAGGUAGUUCGGGCAGGnearMIRNAShortStack
zma-b4r1-120007Zea mays (Maize) 49:24774363-24774383+5800.25UCGGAAGGUAGUUCGGGCAGGnearMIRNAShortStack
zma-b4r1-120270Zea mays (Maize) 49:29533699-29533775-6950.30AAACUGUAACACCCUGAAUUUGGGnearMIRNAShortStack
zma-b4r1-120762Zea mays (Maize) 49:41801141-41801272+1,9020.82ACAUUUUAGGAACCAAACGGCACCnearMIRNAShortStack
zma-b4r1-121082Zea mays (Maize) 49:50347215-50347423-5,0542.17CAAAAGGGGUGUUGAAUAGAUnearMIRNAShortStack
zma-b4r1-123611Zea mays (Maize) 49:111786785-111786894-3260.14UCAAGACAUGUGGAUUAUGGUnearMIRNAShortStack
zma-b4r1-124808Zea mays (Maize) 49:128068023-128068237-5,5112.37UAUACACUGUAUUAGGGAUGAAGAnearMIRNAShortStack
zma-b4r1-125297Zea mays (Maize) 49:134451966-134452126+15,3486.60UGAUAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
zma-b4r1-125700Zea mays (Maize) 49:139046330-139046351-6770.29UUCAAUUGUUGGGUUUCAACUnearMIRNAShortStack
zma-b4r1-128066Zea mays (Maize) 4B73V4_ctg13:31839-31883+2,8061.21UAGCCAAGGAUGACUUGCCGGmiR169nearMIRNAShortStack