het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Zea mays (Maize) genome build 4 (zma-b4)

Version AGPv4 of Zea Mays cv. B73 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
zma-b4r1-41Zea mays (Maize) 41:426833-426870+2,3891.03AGAUCUAACAAGUUGGCUUUCAGsiRNA23ShortStack
zma-b4r1-350Zea mays (Maize) 41:4735942-4736740-7,2523.12AAGAGUAGCGUUGAUACACCGUsiRNA23ShortStack
zma-b4r1-4889Zea mays (Maize) 41:62749583-62749668+1350.06UGAGCGGACCGGAAACUUCAAGCsiRNA23ShortStack
zma-b4r1-7153Zea mays (Maize) 41:100825063-100825194+2,6591.14AAAGCUAGCGAUCAAUGUCAUGUsiRNA23ShortStack
zma-b4r1-8222Zea mays (Maize) 41:135806276-135806326.5480.24CACCUCUUCCUCAUCAAGGUGGAsiRNA23ShortStack
zma-b4r1-10260Zea mays (Maize) 41:182822611-182822634-2140.09ACAACUAACAUGUUUUCUUGCAGsiRNA23ShortStack
zma-b4r1-10605Zea mays (Maize) 41:189262026-189262047+7170.31UUGGACUUGGACUUGGACUGGGAsiRNA23ShortStack
zma-b4r1-10714Zea mays (Maize) 41:190502930-190503076.9520.41GUCUGAACACUAAACGAAGCACAsiRNA23ShortStack
zma-b4r1-11123Zea mays (Maize) 41:197544224-197544416+3,1471.35ACGGAGUGGUAGGGGAGGGUAUsiRNA23ShortStack
zma-b4r1-12161Zea mays (Maize) 41:211340404-211340571+1170.05CUAGUUAGAAAUGGACAAAUCCUsiRNA23ShortStack
zma-b4r1-13198Zea mays (Maize) 41:225027157-225027739-4,3281.86CAUGCUAACACUGAACAUUUUAGsiRNA23ShortStack
zma-b4r1-14923Zea mays (Maize) 41:248072832-248072939-1,1500.49AAGGAUGCGAUCCGCCUGAAGCCsiRNA23ShortStack
zma-b4r1-15412Zea mays (Maize) 41:255196323-255196360-8280.36AAAGGAUUUACAGAAGAUUUUGCsiRNA23ShortStack
zma-b4r1-16898Zea mays (Maize) 41:274277871-274277988-1,4000.60ACGGAGUGGUAGUGGAGGGUAUGsiRNA23ShortStack
zma-b4r1-20662Zea mays (Maize) 410:15279075-15279584.1,8050.78UCCGGAGGGGGUUGGAGGGGCUAsiRNA23ShortStack
zma-b4r1-23821Zea mays (Maize) 410:93624412-93624434-870.04CUUUGAGAAUGGAGUUGGGCGAGsiRNA23ShortStack
zma-b4r1-24091Zea mays (Maize) 410:98280991-98281013+710.03ACGUAGAACUAAUGUCAUUGGCUsiRNA23ShortStack
zma-b4r1-24148Zea mays (Maize) 410:99126047-99126200+3,1361.35CUGACUUCAGAAUUUUUUGGCAGsiRNA23ShortStack
zma-b4r1-24349Zea mays (Maize) 410:102588716-102588851-3620.16AAAAAACACACAUGUGGUGUAGUsiRNA23ShortStack
zma-b4r1-24587Zea mays (Maize) 410:107314142-107314222-3,9731.71CUCUCUGGUAGACCACUAUCUUUsiRNA23ShortStack
zma-b4r1-25393Zea mays (Maize) 410:119082603-119082631+2,2350.96AUGGUCAUAGCUUGUAGAACGAGsiRNA23ShortStack
zma-b4r1-28836Zea mays (Maize) 42:3825806-3825835-1,0700.46CUUGAUGAUGACCUUGAUGAGGCsiRNA23ShortStack
zma-b4r1-30226Zea mays (Maize) 42:16760483-16760505-250.01CGACUACCGACCCACUUGCUACCsiRNA23ShortStack
zma-b4r1-31646Zea mays (Maize) 42:34281740-34281763-3730.16AACACUUAGGUAUGGUCGGCAGCsiRNA23ShortStack
zma-b4r1-32985Zea mays (Maize) 42:54572712-54572920+2,9391.26AUAAACACACAUGUGGCGUAGUGsiRNA23ShortStack
zma-b4r1-33282Zea mays (Maize) 42:59565678-59565699+3750.16UAUUAUGGACUUAAGCCCCCCCUsiRNA23ShortStack
zma-b4r1-34782Zea mays (Maize) 42:100290815-100291029+3,9641.70ACGGAGUGGUAGUGGAGGGUAUGsiRNA23ShortStack
zma-b4r1-34945Zea mays (Maize) 42:105957605-105957622.730.03ACAAGCGACUAGAACUUUGUUCUsiRNA23ShortStack
zma-b4r1-35321Zea mays (Maize) 42:114357138-114357295-5,2002.24UUCGUUCCCCAGCGGAGUCGCCAsiRNA23ShortStack
zma-b4r1-36253Zea mays (Maize) 42:141508160-141508244+7230.31AGCAAUGAUGUUUCCCUGAGUUCsiRNA23ShortStack
zma-b4r1-37244Zea mays (Maize) 42:162275066-162275096-7960.34AUGUCUAACUGUUUUAUUUUCAGsiRNA23ShortStack
zma-b4r1-39042Zea mays (Maize) 42:190885207-190885238-3,1021.33UGGAAUUGUAGUAAAACUUUGGUsiRNA23ShortStack
zma-b4r1-40644Zea mays (Maize) 42:210286140-210286167+1,0910.47UAAAGAUCCAAACACGAAGAGCUsiRNA23ShortStack
zma-b4r1-41089Zea mays (Maize) 42:214477225-214477420-2,7991.20UUCGAUCCCCACGGACGGCGCCAsiRNA23ShortStack
zma-b4r1-42026Zea mays (Maize) 42:224437241-224437270+1,4520.62UUCUUUAACUGCAACUCUGGCACsiRNA23ShortStack
zma-b4r1-45357Zea mays (Maize) 43:18006094-18006177-2,4061.04UAAUGGAUGUUUAGUGGCACGCCsiRNA23ShortStack
zma-b4r1-45374Zea mays (Maize) 43:18341132-18341259-1,0960.47ACGGAGUGGUAGGGGAGGGUACAsiRNA23ShortStack
zma-b4r1-46812Zea mays (Maize) 43:41519715-41519737-770.03UCGCAACGUGAAGUAGUAGGCUCsiRNA23ShortStack
zma-b4r1-50121Zea mays (Maize) 43:136874305-136874329-3000.13UGUUUCUGAUUGGUUUUUUCAAGsiRNA23ShortStack
zma-b4r1-50650Zea mays (Maize) 43:146857548-146857696-1,8820.81UCGACUGAUUUCUCCUGUUGCAGsiRNA23ShortStack
zma-b4r1-51177Zea mays (Maize) 43:156119660-156119682+570.03AAACACGGCCUAAGAUAGACUCUsiRNA23ShortStack
zma-b4r1-51788Zea mays (Maize) 43:167031297-167031368-3180.14CCUUGAGGACAUGUGUGUUUUUUsiRNA23ShortStack
zma-b4r1-51816Zea mays (Maize) 43:167221117-167221141+4330.19UUGUCUGAAUGUGUUGCAAGCAGsiRNA23ShortStack
zma-MIR397aZea mays (Maize) 43:183569171-183569313-1200.05UCAUUGAGCGCAGCGUUGAUGUUmiR397siRNA23miRBase21
zma-b4r1-54818Zea mays (Maize) 43:204007394-204007474-6960.30CAUGCUAACACUGAACAUUUUAGsiRNA23ShortStack
zma-b4r1-60414Zea mays (Maize) 44:35685880-35685903-8510.37UGCCAAGCAGGAUUUUAGAAACAsiRNA23ShortStack
zma-b4r1-61208Zea mays (Maize) 44:49842149-49842173-1,0650.46UUAUCUAACACUGUCGUCUUCAGsiRNA23ShortStack
zma-b4r1-62931Zea mays (Maize) 44:94882295-94882318+5280.23AUCCUGUGAAAGGGCGUCGCGCCsiRNA23ShortStack
zma-b4r1-64206Zea mays (Maize) 44:138240252-138240450-1,2290.53ACCAGAACAUCGUAGGCGACACCsiRNA23ShortStack
zma-b4r1-64402Zea mays (Maize) 44:143269019-143269041-560.02CACGUCAAGCAGGAACUCGAGCCsiRNA23ShortStack
zma-b4r1-65873Zea mays (Maize) 44:165117856-165117886-4870.21GUAAAUGAUGAUCUUACUCGGAUsiRNA23ShortStack
zma-b4r1-71306Zea mays (Maize) 44:241909569-241909596+3820.16AUCUUACAUAUUUUUUUUGCAGsiRNA23ShortStack
zma-b4r1-71402Zea mays (Maize) 44:243011811-243011916+6730.29CCGCCCCUGUAGAUCAACGGCUAsiRNA23ShortStack
zma-b4r1-73279Zea mays (Maize) 45:12774051-12774082-1,2310.53CAUUCUGACGUUGUCCUUGGCAGsiRNA23ShortStack
zma-b4r1-73321Zea mays (Maize) 45:13397737-13397795-5780.25UGGUCAUCCGAGGAGUCGAAUUCsiRNA23ShortStack
zma-b4r1-75117Zea mays (Maize) 45:36320451-36320473.600.03UUUUCGUCGUUGUCUGGGCUCCUsiRNA23ShortStack
zma-b4r1-75666Zea mays (Maize) 45:46949676-46949704+2090.09AUAAAUACUCCCCAACCACCCCsiRNA23ShortStack
zma-b4r1-76077Zea mays (Maize) 45:55122160-55122182+540.02GAUGGUUGGGAUUGGUGGUGCAGsiRNA23ShortStack
zma-b4r1-76940Zea mays (Maize) 45:70461190-70461217+4240.18CGGCCUUAACAAACUGUUUGCAGsiRNA23ShortStack
zma-b4r1-78902Zea mays (Maize) 45:124644116-124644142-1660.07UGAUGAUGAUGAUGAUGAUGAAAmiR166siRNA23ShortStack
zma-b4r1-80271Zea mays (Maize) 45:159255869-159256308-8,1503.50AUAGUGACCAGAGCCGGACGGCCsiRNA23ShortStack
zma-b4r1-81140Zea mays (Maize) 45:173629825-173630003-1,2530.54ACAUCGGACCCACAAAUCAUAGAsiRNA23ShortStack
zma-b4r1-81839Zea mays (Maize) 45:182803071-182803096.1,0990.47CAGCNGGUUUACUAUUGUUUAGGsiRNA23ShortStack
zma-b4r1-83312Zea mays (Maize) 45:201575336-201575359-8490.37UCAACAAAGAAAAUAAAGUGCUCUsiRNA23ShortStack
zma-b4r1-84582Zea mays (Maize) 45:215390471-215390493.820.04CCACCCUCGGUCACAAUUCUAGCsiRNA23ShortStack
zma-b4r1-84900Zea mays (Maize) 45:217579056-217579081+5460.24AUCUUACAUUAACAUAUCUGUAGsiRNA23ShortStack
zma-b4r1-85507Zea mays (Maize) 45:222464550-222464721-2,6451.14UGGACUAACAAGCUGUUUAUCAGsiRNA23ShortStack
zma-b4r1-85953Zea mays (Maize) 46:7130108-7130131+600.03UAAAGGACAUAGAUACCCUGCCUsiRNA23ShortStack
zma-b4r1-86248Zea mays (Maize) 46:14323201-14323762-15,429,7386,634.60AGCCCCGCGUCGCACGGAUUCGUsiRNA23ShortStack
zma-b4r1-86810Zea mays (Maize) 46:26654699-26654838-1450.06AAAGCUAGUGGACCUUACCCGAAsiRNA23ShortStack
zma-b4r1-87856Zea mays (Maize) 46:57808831-57808855-8900.38CACCGCUUGGCUUCGGAGGGCCUsiRNA23ShortStack
zma-b4r1-96681Zea mays (Maize) 47:4861257-4861280+6820.29AUCGAAACCUGGCUCUGAUACCAmiR5139siRNA23ShortStack
zma-b4r1-97389Zea mays (Maize) 47:14405944-14406158-2,0250.87ACGGAGUGGUAGUGGAGGGUAUGsiRNA23ShortStack
zma-b4r1-98783Zea mays (Maize) 47:41605591-41605698+1,3270.57AUUGAUAGUGAACGACAAACAUCAsiRNA23ShortStack
zma-b4r1-99229Zea mays (Maize) 47:55331721-55331805.9450.41ACGGAGUGGUAGUGGAGGGUAUGsiRNA23ShortStack
zma-b4r1-99976Zea mays (Maize) 47:88782159-88782181.520.02AUAUGGACCAUUGAUCUAGGAUCsiRNA23ShortStack
zma-b4r1-103695Zea mays (Maize) 47:151058860-151058912.2560.11CUGAGACCUUAAAUUGGAAGCCUsiRNA23ShortStack
zma-b4r1-103738Zea mays (Maize) 47:151608029-151608048-490.02AAUUCAGGAUCUCGGUAGAAAUCsiRNA23ShortStack
zma-b4r1-103901Zea mays (Maize) 47:153551672-153551697+6190.27ACAUAUGAUUUCUGGUACUUUCCsiRNA23ShortStack
zma-b4r1-107164Zea mays (Maize) 48:5861342-5861364.490.02GUUCCGUUAGACAAAUUGUUCUCsiRNA23ShortStack
zma-b4r1-107537Zea mays (Maize) 48:10785206-10785314+4400.19AAGCGAGGUGGCUGGAGACGGGCsiRNA23ShortStack
zma-b4r1-108725Zea mays (Maize) 48:28577338-28577368+1,3160.57AGGACUCACUGUUCAUUAUGCAGsiRNA23ShortStack
zma-b4r1-109272Zea mays (Maize) 48:42598047-42598076+3,6071.55UUCGUUCCCCAGCGGAGUCGCCAsiRNA23ShortStack
zma-b4r1-111524Zea mays (Maize) 48:104225021-104225044+2420.10CUCACUGACCGGACAUUCCUAAGsiRNA23ShortStack
zma-b4r1-113514Zea mays (Maize) 48:135349318-135349341+4440.19AACACUUAGGUAUGGUCGGCAGCsiRNA23ShortStack
zma-b4r1-114042Zea mays (Maize) 48:143078492-143079484-40,68717.50ACGGAGUGGUAGUGGAGGGUAUGsiRNA23ShortStack
zma-b4r1-116267Zea mays (Maize) 48:168280635-168280659+2150.09UUGUCUCAAUGUGCUGCAAGCAGsiRNA23ShortStack
zma-b4r1-118652Zea mays (Maize) 49:8379245-8379265+1250.05GUGUAAUUGUGGAGCUAAUAACUsiRNA23ShortStack
zma-b4r1-120039Zea mays (Maize) 49:25257922-25257947+4880.21CUAACUAACGAUCGAUGUUGCAGsiRNA23ShortStack
zma-b4r1-120420Zea mays (Maize) 49:32621817-32621841-6100.26GUGACUGACAUUCUUUGUCCAAGsiRNA23ShortStack
zma-b4r1-121070Zea mays (Maize) 49:49739708-49739732+2630.11UAUACUGAUUCUUUUACAUUCAGsiRNA23ShortStack
zma-b4r1-121774Zea mays (Maize) 49:76058877-76058900+1,1480.49GUUCCCCCCUACCUGGCGCGCCAsiRNA23ShortStack
zma-b4r1-123469Zea mays (Maize) 49:109348631-109348756-1,7730.76CCUUGGAACCGAACUCUUGGAGAsiRNA23ShortStack
zma-b4r1-128358Zea mays (Maize) 4B73V4_ctg153:5228-5714+20,519,9228,823.32AGCCCCGCGUCGCACGGAUUCGUsiRNA23ShortStack
zma-b4r1-129266Zea mays (Maize) 4B73V4_ctg91:58435-58457.1010.04UUGCUUCAGACUGAGUACCGGGAsiRNA23ShortStack