Lunardon et al. 2020

Genome and annotations summary

Version v6 of Olea europaea cv. Farga from The de novo Genome Assembly and Annotation Team

Small RNA Loci

Click links below to show sub-sets of annotations

Small RNA-seq data

Reference Set

accession

aligned reads

unaligned reads

source db

is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.

tissue

ecotype / cultivar

genotype

replicate id Alignments that are biological replicates have the same replicate ids

refset id If set, the alignment is part of the indicated reference set

description

olive_all_reference_set

72,110,886

19,845,670

none

mixed

Ayvalik

refset1

merge of 6 libraries - reference set 1

Invidiual alignments (6)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
SRR636243	12,039,336	3,067,011	SRA	0	fruit	Ayvalik	wt	A	1	fruit (unripe) -- control conditions
SRR636244	10,910,725	2,741,534	SRA	0	fruit	Ayvalik	wt	B	1	fruit (ripe) -- control conditions
SRR636245	12,829,432	3,935,702	SRA	0	leaf	Ayvalik	wt	C	1	leaf (juvenile leaves from on-year trees) -- control conditions
SRR636246	11,664,407	3,391,544	SRA	0	leaf	Ayvalik	wt	D	1	leaf (mature leaves from on-year trees) -- control conditions
SRR636247	12,431,813	3,368,568	SRA	0	leaf	Ayvalik	wt	E	1	leaf (juvenile leaves from off-year trees) -- control conditions
SRR636248	12,235,173	3,341,311	SRA	0	leaf	Ayvalik	wt	F	1	leaf (mature leaves from off-year trees) -- control conditions

	ShortStack
MIRNA	56
nearMIRNA	275
siRNA20	23
siRNA21	863
siRNA22	341
siRNA23	369
siRNA24	50,495
OtherRNA	462
NotExpressed	0

Data from Lunardon et al. (2020)

Genome and annotations summary

Olea europaea (Olive Tree) genome build 6 (oeu-b6)

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Download genome assembly FASTA file

BLAST search

Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (6)