Data from Lunardon et al. (2020)

Annotations viewer

Genome

Olea europaea (Olive Tree) genome build 6 (oeu-b6)

Version v6 of Olea europaea cv. Farga from The de novo Genome Assembly and Annotation Team

Locus type

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Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
oeu-b6r1-760	Olea europaea (Olive Tree) 6	Oe6_s00013:553529-553610	+	1,069	11.63	GAGCCUUUGGGGAGAGGGACC		MIRNA	ShortStack
oeu-b6r1-1636	Olea europaea (Olive Tree) 6	Oe6_s00033:683174-683269	-	193	2.10	CAGCCAAGGAUGACUUGCCGG	miR169	MIRNA	ShortStack
oeu-b6r1-1831	Olea europaea (Olive Tree) 6	Oe6_s00042:334513-334624	+	1,663	18.09	UUCAAUAAAGCUGUGGGAAG	miR396	MIRNA	ShortStack
oeu-b6r1-2218	Olea europaea (Olive Tree) 6	Oe6_s00052:472213-472399	+	467,624	5,085.27	UCGCUUGGUGCAGGUCGGGAA	miR168	MIRNA	ShortStack
oeu-b6r1-2260	Olea europaea (Olive Tree) 6	Oe6_s00053:152284-152374	-	4,707	51.19	GUUCAAGAAAGCUGUGGGAGA	miR396	MIRNA	ShortStack
oeu-b6r1-2467	Olea europaea (Olive Tree) 6	Oe6_s00059:476001-476108	-	39,276	427.12	UACGCAGGAGAGAUGACGCCC	miR391	MIRNA	ShortStack
oeu-b6r1-3080	Olea europaea (Olive Tree) 6	Oe6_s00082:97671-97773	+	76,401	830.84	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	ShortStack
oeu-b6r1-3421	Olea europaea (Olive Tree) 6	Oe6_s00096:362659-362730	-	3,391	36.88	AGAAUCUUGAUGAUGCUGCAU	miR172	MIRNA	ShortStack
oeu-b6r1-3487	Olea europaea (Olive Tree) 6	Oe6_s00098:291953-292063	+	2,364	25.71	AGAAUCUUGAUGAUGCUGCAU	miR172	MIRNA	ShortStack
oeu-b6r1-4432	Olea europaea (Olive Tree) 6	Oe6_s00147:294346-294517	+	315	3.43	AGGGGCGUGUAACCGGGCAUG		MIRNA	ShortStack
oeu-b6r1-5201	Olea europaea (Olive Tree) 6	Oe6_s00191:75779-75907	+	1,031	11.21	AUGCACUGUGUUACUAAUCCACCA		MIRNA	ShortStack
oeu-b6r1-6141	Olea europaea (Olive Tree) 6	Oe6_s00251:198431-198687	+	20,589	223.90	UUUCCUAUACCUCCCAUACCGA		MIRNA	ShortStack
oeu-b6r1-6977	Olea europaea (Olive Tree) 6	Oe6_s00337:159712-159863	-	1,423	15.48	GCCAUGUAGGACGAUUACCGAUAG		MIRNA	ShortStack
oeu-b6r1-7146	Olea europaea (Olive Tree) 6	Oe6_s00358:21290-21411	+	25,225	274.31	UCCUAAGCUCUGGAGGUGGUGC		MIRNA	ShortStack
oeu-b6r1-7677	Olea europaea (Olive Tree) 6	Oe6_s00434:161160-161263	-	259,354	2,820.40	UCGGCGUCGUCAUUGCACCAC		MIRNA	ShortStack
oeu-b6r1-7742	Olea europaea (Olive Tree) 6	Oe6_s00448:22582-22655	+	1,141	12.41	UUCCACAGCUUUCUUGAACUG	miR396	MIRNA	ShortStack
oeu-b6r1-8337	Olea europaea (Olive Tree) 6	Oe6_s00635:53748-53863	-	40,710	442.71	UUUCCUAUUCCUCCCAUACCGA		MIRNA	ShortStack
oeu-b6r1-8893	Olea europaea (Olive Tree) 6	Oe6_s01923:1659011-1659095	-	4,322	47.00	UGAAGCUGCCAGCCUGAUCUU	miR167	MIRNA	ShortStack
oeu-b6r1-8937	Olea europaea (Olive Tree) 6	Oe6_s01924:533516-533617	+	990	10.77	ACUUUUUGGUUGUUUGAUUGCAAG		MIRNA	ShortStack
oeu-b6r1-9736	Olea europaea (Olive Tree) 6	Oe6_s01943:203782-203914	-	1,026,473	11,162.59	UCGGACCAGGCUUCAUUCCUC	miR166	MIRNA	ShortStack
oeu-b6r1-10889	Olea europaea (Olive Tree) 6	Oe6_s01975:134296-134410	+	557	6.06	UGCAUUUACACCUGCACCUUC	miR530	MIRNA	ShortStack
oeu-b6r1-12244	Olea europaea (Olive Tree) 6	Oe6_s02031:251039-251113	+	6,408	69.69	UCGGCGUCGUCAUUGCACCAC		MIRNA	ShortStack
oeu-b6r1-12325	Olea europaea (Olive Tree) 6	Oe6_s02037:219365-219476	+	122,155	1,328.40	AGAAUCCUGAUGAUGCUGCAU	miR172	MIRNA	ShortStack
oeu-b6r1-12632	Olea europaea (Olive Tree) 6	Oe6_s02050:237439-237617	+	1,003	10.91	GCCACGUAAGGUGAUUGCGGUAG		MIRNA	ShortStack
oeu-b6r1-15137	Olea europaea (Olive Tree) 6	Oe6_s02220:127014-127109	+	1,463	15.91	GCGUACAAGGAGCCAAGCAUA	miR160	MIRNA	ShortStack
oeu-b6r1-15845	Olea europaea (Olive Tree) 6	Oe6_s02296:88616-88815	+	638	6.94	ACACCCUUCGGCACACCAAAUUAU		MIRNA	ShortStack
oeu-b6r1-16355	Olea europaea (Olive Tree) 6	Oe6_s02370:135088-135177	-	14,425	156.87	AAGCAAGACCGAACAUGACCA		MIRNA	ShortStack
oeu-b6r1-16958	Olea europaea (Olive Tree) 6	Oe6_s02514:42920-43071	-	399	4.34	AGGAGAGUGUAUACCGAACUGUAA		MIRNA	ShortStack
oeu-b6r1-17688	Olea europaea (Olive Tree) 6	Oe6_s03846:507505-507572	+	3,075	33.44	CAGGGAUGGCUAUGGAGCAGG		MIRNA	ShortStack
oeu-b6r1-18629	Olea europaea (Olive Tree) 6	Oe6_s03862:972555-972641	-	301,964	3,283.77	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	ShortStack
oeu-b6r1-20093	Olea europaea (Olive Tree) 6	Oe6_s03915:344121-344209	-	896	9.74	UUCCAAAGGGAUCGCAUUGAUC	miR393	MIRNA	ShortStack
oeu-b6r1-20224	Olea europaea (Olive Tree) 6	Oe6_s03923:176817-176908	+	143,999	1,565.95	UGAAGCUGCCAGCAUGAUCUU	miR167	MIRNA	ShortStack
oeu-b6r1-20368	Olea europaea (Olive Tree) 6	Oe6_s03927:544256-544373	+	656	7.13	GAUGGAUGAAAUUGGUAUGGGUGA		MIRNA	ShortStack
oeu-b6r1-21396	Olea europaea (Olive Tree) 6	Oe6_s03979:411620-411703	-	2,572	27.97	UCGCAGGAGAGAUGGCACUAA	miR3627	MIRNA	ShortStack
oeu-b6r1-21531	Olea europaea (Olive Tree) 6	Oe6_s03986:399792-399887	+	32,507	353.50	UGGAGAAGCAGGGUACGUGGA	miR164	MIRNA	ShortStack
oeu-b6r1-22905	Olea europaea (Olive Tree) 6	Oe6_s04076:132111-132183	-	4,267	46.40	UGAAGCUGCCAGCUUGAUCUAA	miR167	MIRNA	ShortStack
oeu-b6r1-26307	Olea europaea (Olive Tree) 6	Oe6_s05770:475511-475653	-	138,836	1,509.80	UGGAAUGGAGUUCUGCGGAAGG		MIRNA	ShortStack
oeu-b6r1-26597	Olea europaea (Olive Tree) 6	Oe6_s05774:710415-710489	-	2,840	30.88	UCGGCGUCGUCAUUGCACCAC		MIRNA	ShortStack
oeu-b6r1-26890	Olea europaea (Olive Tree) 6	Oe6_s05780:918254-918337	-	675	7.34	UUAGAUGAUCAUCAACAAACA	miR827	MIRNA	ShortStack
oeu-b6r1-26979	Olea europaea (Olive Tree) 6	Oe6_s05783:102699-102924	+	693	7.54	CCGGUAGUCGUCCUAUGUGGCAUA		MIRNA	ShortStack
oeu-b6r1-28388	Olea europaea (Olive Tree) 6	Oe6_s05822:18139-18226	+	3,298	35.87	UUCCACAGCUUUCUUGAACUG	miR396	MIRNA	ShortStack
oeu-b6r1-28599	Olea europaea (Olive Tree) 6	Oe6_s05828:437478-437572	-	1,796	19.53	UGGAGAAGCAGGGCACGUGCA	miR164	MIRNA	ShortStack
oeu-b6r1-30123	Olea europaea (Olive Tree) 6	Oe6_s05898:317909-317991	-	177,225	1,927.27	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	ShortStack
oeu-b6r1-33103	Olea europaea (Olive Tree) 6	Oe6_s06126:15646-15769	+	148,692	1,616.98	UGACAGAAGAGAGUGAGCAC	miR156	MIRNA	ShortStack
oeu-b6r1-35829	Olea europaea (Olive Tree) 6	Oe6_s07709:873391-873485	+	495	5.38	UGGAGAAGCAGGGCACGUGCA	miR164	MIRNA	ShortStack
oeu-b6r1-35957	Olea europaea (Olive Tree) 6	Oe6_s07712:671693-671762	+	787	8.56	UCAUUGAGUGCAGCGUUGAUG	miR397	MIRNA	ShortStack
oeu-b6r1-36630	Olea europaea (Olive Tree) 6	Oe6_s07732:771919-772000	+	115,246	1,253.27	CAGGGAUGGAUAUGGAGCAGG		MIRNA	ShortStack
oeu-b6r1-38094	Olea europaea (Olive Tree) 6	Oe6_s07782:361330-361440	-	1,484	16.14	UGUCAUGAUUUGAAUAGUUCGGAG		MIRNA	ShortStack
oeu-b6r1-42531	Olea europaea (Olive Tree) 6	Oe6_s08110:147097-147171	+	6,394	69.53	AGAAUCUUGAUGAUGCUGCAU	miR172	MIRNA	ShortStack
oeu-b6r1-42735	Olea europaea (Olive Tree) 6	Oe6_s08140:41568-41661	-	34,519	375.38	UGACAGAAGAGAGUGAGCAC	miR156	MIRNA	ShortStack
oeu-b6r1-42865	Olea europaea (Olive Tree) 6	Oe6_s08163:98265-98375	-	10,033	109.11	UGGAGAAGCAGGGCACGUGCA	miR164	MIRNA	ShortStack
oeu-b6r1-44036	Olea europaea (Olive Tree) 6	Oe6_s09609:490037-490097	-	506	5.50	GAGGUGUAAAGUGGGUUGGGUUGG		MIRNA	ShortStack
oeu-b6r1-45732	Olea europaea (Olive Tree) 6	Oe6_s09647:501377-501479	-	85,247	927.04	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	ShortStack
oeu-b6r1-49547	Olea europaea (Olive Tree) 6	Oe6_s09840:3989-4095	-	3,756	40.85	GAUGUGUCGAGGUGUCAAAAAUGU		MIRNA	ShortStack
oeu-b6r1-49603	Olea europaea (Olive Tree) 6	Oe6_s09843:263920-264014	+	45,772	497.76	UCGGACCAGGCUUCGUUCCUC	miR166	MIRNA	ShortStack
oeu-b6r1-51758	Olea europaea (Olive Tree) 6	Oe6_s10072:132695-132801	-	2,119	23.04	GAUGUGUCGAGGUGUCAAAAAUGU		MIRNA	ShortStack