Data from Lunardon et al. (2020)

Genome and annotations summary

Fragaria vesca (Woodland Strawberry) genome build 2.0 (fve-b2.0)

Version v2.0 of Fragaria vesca cv. Hawaii4 from The Genome Database for Rosaceae

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Download genome assembly FASTA file

BLAST search

Small RNA Loci

Click links below to show sub-sets of annotations

	miRBase22-BestBlastHit	Xia_et_al_2015	ShortStack
MIRNA	83	0	75
nearMIRNA	11	0	27
siRNA20	1	0	10
siRNA21	14	2	640
siRNA22	1	0	79
siRNA23	0	0	49
siRNA24	2	0	50,392
OtherRNA	5	0	3,507
NotExpressed	1	0	0

Small RNA-seq data

Reference Set

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
woodland_strawberry_all_reference_set	301,902,738	50,985,118	none	1	mixed	mixed	wt	refset1	1	merge of 14 libraries - reference set 1

Invidiual alignments (14)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
SRR1586419	18,016,006	3,359,247	SRA	0	ovary wall	Yellow Wonder 5AF7	wt	A	1	ovary wall (6-months-old plants -- 4 days post anthesis) -- control conditions
SRR1586420	15,538,677	2,557,063	SRA	0	ovary wall	Yellow Wonder 5AF7	wt	B	1	ovary wall (6-months-old plants -- 10 days post anthesis) -- control conditions
SRR1586421	7,769,972	1,625,703	SRA	0	seed	Yellow Wonder 5AF7	wt	C	1	seed (6-months-old plants -- 4 days post anthesis) -- control conditions
SRR1586422	29,352,714	5,294,166	SRA	0	seed	Yellow Wonder 5AF7	wt	D	1	seed (6-months-old plants -- 10 days post anthesis) -- control conditions
SRR1586423	27,150,885	5,566,005	SRA	0	receptacle	Yellow Wonder 5AF7	wt	E	1	receptacle (6-months-old plants -- 10 days post anthesis) -- control conditions
SRR1586424	34,289,931	6,526,186	SRA	0	flower bud	Yellow Wonder 5AF7	wt	F	1	flower bud (6-months-old plants -- unopen flowers between stages 8 and 12) -- control conditions
SRR1586425	30,275,548	4,859,950	SRA	0	leaf	Yellow Wonder 5AF7	wt	G	1	leaf (6-months-old plants -- unexpanded leaf) -- control conditions
SRR1586426	37,514,197	7,346,773	SRA	0	seedling	Yellow Wonder 5AF7	wt	H	1	seedling (6-months-old plants -- the organ is 4-weeks-old) -- control conditions
SRR2003391	11,314,300	1,350,468	SRA	0	stolon	Hawaii 4	wt	I	1	stolon (8-weeks-old plants -- mixture of developmental stages) -- control conditions
SRR2003392	12,325,901	1,540,276	SRA	0	flower bud	Hawaii 4	wt	J	1	flower bud (8-weeks-old plants -- mixture of developmental stages) -- control conditions
SRR2003393	14,686,920	2,108,787	SRA	0	flower	Hawaii 4	wt	K	1	flower (8-weeks-old plants -- open flower mixture of developmental stages) -- control conditions
SRR2003394	12,762,516	1,852,796	SRA	0	fruit	Hawaii 4	wt	L	1	fruit (8-weeks-old plants -- mixture of developmental stages) -- control conditions
SRR2003396	13,158,915	1,198,091	SRA	0	leaf	Hawaii 4	wt	M	1	leaf (8-weeks-old plants -- mixture of developmental stages) -- control conditions
SRX248546	37,746,256	5,799,607	SRA	0	flower	Yellow Wonder 5AF7	wt	N	1	flower (1 day after opening) -- control conditions