het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Fragaria vesca (Woodland Strawberry) genome build 2.0 (fve-b2.0)

Version v2.0 of Fragaria vesca cv. Hawaii4 from The Genome Database for Rosaceae

Locus type


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Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
fve-b2.0r1-148Fragaria vesca (Woodland Strawberry) 2.0Fvb1:725830-726862+4,61313.07CGGCAACGAGCUGACUUGCAUCsiRNA22ShortStack
fve-b2.0r1-149Fragaria vesca (Woodland Strawberry) 2.0Fvb1:727124-728233+8,54624.22CGAGGAUGAGGAUUAUGACGUUsiRNA22ShortStack
fve-b2.0r1-234Fragaria vesca (Woodland Strawberry) 2.0Fvb1:1175842-1175978-6971.98UGAGAAUGAUGUGGAUCUCAGCmiR11311siRNA22ShortStack
fve-b2.0r1-392Fragaria vesca (Woodland Strawberry) 2.0Fvb1:1884946-1885078.28,97582.11UCAGUGGUGUCUGACUUGAUCUsiRNA22ShortStack
fve-b2.0r1-991Fragaria vesca (Woodland Strawberry) 2.0Fvb1:4537699-4537864+24,23568.68AACCAAUGAUUAUUCACGAUUCsiRNA22ShortStack
fve-b2.0r1-4852Fragaria vesca (Woodland Strawberry) 2.0Fvb1:19351599-19352667.2,0235.73AAAGAAAAGAAAAACGGGUsiRNA22ShortStack
fve-b2.0r1-4853Fragaria vesca (Woodland Strawberry) 2.0Fvb1:19352810-19353085.2850.81CCGAAGUCAUUGUUGUAGCCUUsiRNA22ShortStack
fve-b2.0r1-6321Fragaria vesca (Woodland Strawberry) 2.0Fvb2:1114443-1114778-3,4579.80UUUGAACUAUAUAUACAUUUUGsiRNA22ShortStack
fve-b2.0r1-7439Fragaria vesca (Woodland Strawberry) 2.0Fvb2:5183784-5184350+1,7144.86UCGUGUCCCACUGGGCGUGCCAsiRNA22ShortStack
fve-b2.0r1-9516Fragaria vesca (Woodland Strawberry) 2.0Fvb2:12660087-12660701+1,2343.50UUGGCCUGUUAAUUUUAAUGAGsiRNA22ShortStack
fve-b2.0r1-9517Fragaria vesca (Woodland Strawberry) 2.0Fvb2:12661143-12662649.1,7995.10UGACAAUGUAUUGCUAUGAACAUsiRNA22ShortStack
fve-b2.0r1-11409Fragaria vesca (Woodland Strawberry) 2.0Fvb2:19653346-19654846.3,62810.28UAGGAGGAUUAUGGGAAACACCsiRNA22ShortStack
fve-b2.0r1-11607Fragaria vesca (Woodland Strawberry) 2.0Fvb2:20405720-20405809-2,1045.96UUGAUAGAGAUUGAGUAGGAUUsiRNA22ShortStack
fve-b2.0r1-12847Fragaria vesca (Woodland Strawberry) 2.0Fvb2:26040842-26042049.57,799163.79CGGUAUUGUUGAAACCUGGAGAsiRNA22ShortStack
fve-b2.0r1-12966Fragaria vesca (Woodland Strawberry) 2.0Fvb2:26644783-26646629+107,285304.02AAGAGAUGAUGAACCAUGACAACsiRNA22ShortStack
fve-b2.0r1-13340Fragaria vesca (Woodland Strawberry) 2.0Fvb2:28349948-28351815+245,772696.46UCCAGCCUUAGAGAUGAUGAACsiRNA22ShortStack
fve-b2.0r1-13479Fragaria vesca (Woodland Strawberry) 2.0Fvb3:37043-39374-446,6541,265.71CGACACCGUAAUCCCUGAAAGUsiRNA22ShortStack
fve-b2.0r1-14252Fragaria vesca (Woodland Strawberry) 2.0Fvb3:3124580-3127059.44,391125.79UUUUUUGUAGACUACUGGCUCCsiRNA22ShortStack
fve-b2.0r1-14253Fragaria vesca (Woodland Strawberry) 2.0Fvb3:3127157-3129402+61,346173.84ACAUUCUGCAACUUGAUGGAGAsiRNA22ShortStack
fve-MIR169c-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb3:3149058-3149163+510.15UAGCCAAGGAUGACUUGCCUmiR169siRNA22miRBase22-BestBlastHit
fve-b2.0r1-14675Fragaria vesca (Woodland Strawberry) 2.0Fvb3:4762487-4762526.1,0432.96AGGCUGAAUCUCAGUGGAUCGUsiRNA22ShortStack
fve-b2.0r1-14715Fragaria vesca (Woodland Strawberry) 2.0Fvb3:4910960-4910981-1,8265.17GUGGAGAAGGGUUUCUUGUGAAsiRNA22ShortStack
fve-b2.0r1-15279Fragaria vesca (Woodland Strawberry) 2.0Fvb3:7198824-7199115.5661.60CAGCCACGAGACCUGUAACAGAsiRNA22ShortStack
fve-b2.0r1-15470Fragaria vesca (Woodland Strawberry) 2.0Fvb3:8023110-8023690.2260.64UGACCAGAGAGAUUAUUGUAACsiRNA22ShortStack
fve-b2.0r1-15973Fragaria vesca (Woodland Strawberry) 2.0Fvb3:10106488-10107680.1,5654.44GCAAAGAACGUGAAAUGGUGAsiRNA22ShortStack
fve-b2.0r1-15974Fragaria vesca (Woodland Strawberry) 2.0Fvb3:10107847-10108636-8412.38GCAAAGAACGUGAAAUGGUGAsiRNA22ShortStack
fve-b2.0r1-16017Fragaria vesca (Woodland Strawberry) 2.0Fvb3:10271236-10271283-7512.13ACCUAGCUCUGAUACCAUGUUAsiRNA22ShortStack
fve-b2.0r1-20145Fragaria vesca (Woodland Strawberry) 2.0Fvb3:24886316-24886766.2,4666.99AAUAUGAUCAGUCAAUACCUGUsiRNA22ShortStack
fve-b2.0r1-21089Fragaria vesca (Woodland Strawberry) 2.0Fvb3:28097739-28098691+39,352111.51UAGAUAUGGGCUUGAACGGGAAsiRNA22ShortStack
fve-b2.0r1-21663Fragaria vesca (Woodland Strawberry) 2.0Fvb3:30544187-30545490.2,2046.25UUUGGGAGAGAACAGACUUAUCsiRNA22ShortStack
fve-b2.0r1-22635Fragaria vesca (Woodland Strawberry) 2.0Fvb4:1090239-1090624-88,579251.01UCUUUCCAAUUCCUCCCAUGCCmiR482siRNA22ShortStack
fve-b2.0r1-23041Fragaria vesca (Woodland Strawberry) 2.0Fvb4:2497812-2498148+407,5011,154.76UCUAUUCAAAGAGAUGACUGUUmiR11285siRNA22ShortStack
fve-b2.0r1-24975Fragaria vesca (Woodland Strawberry) 2.0Fvb4:9076772-9076949.3981.13UUGAAGUUGACUUGAUGGCUCCsiRNA22ShortStack
fve-b2.0r1-26079Fragaria vesca (Woodland Strawberry) 2.0Fvb4:13239561-13240249.1790.51GCGUAUUCAGAGACCsiRNA22ShortStack
fve-b2.0r1-28490Fragaria vesca (Woodland Strawberry) 2.0Fvb4:21789797-21790071+4371.24UUGUUUUAGAUACUGUAAACUsiRNA22ShortStack
fve-b2.0r1-28830Fragaria vesca (Woodland Strawberry) 2.0Fvb4:22971766-22973155.6931.96UUUGUGUACGGACUGUAGCCUsiRNA22ShortStack
fve-b2.0r1-29097Fragaria vesca (Woodland Strawberry) 2.0Fvb4:24052502-24053012.31,91090.43UUCCGUGGAACUUUUUGUUACGsiRNA22ShortStack
fve-b2.0r1-30260Fragaria vesca (Woodland Strawberry) 2.0Fvb4:28705484-28705691+1,2703.60GGAGUGACAUUAUGAAUACAGGsiRNA22ShortStack
fve-b2.0r1-30584Fragaria vesca (Woodland Strawberry) 2.0Fvb4:30272106-30272228.740.21UAUGGUGAGAACAUUGCACAAAsiRNA22ShortStack
fve-b2.0r1-30585Fragaria vesca (Woodland Strawberry) 2.0Fvb4:30272353-30273334.4331.23GUUUCCUCAAUCGUCAACUGAUsiRNA22ShortStack
fve-b2.0r1-30592Fragaria vesca (Woodland Strawberry) 2.0Fvb4:30300581-30301402.5131.45CUGGUGAAGGACUUAAAAGAGsiRNA22ShortStack
fve-b2.0r1-30593Fragaria vesca (Woodland Strawberry) 2.0Fvb4:30301789-30303615.2,1896.20GAAGAUGAGGUCUGUAGACUUsiRNA22ShortStack
fve-b2.0r1-30594Fragaria vesca (Woodland Strawberry) 2.0Fvb4:30304141-30304616.3490.99CUGCAAAUAGUAUCAUAUGGGAsiRNA22ShortStack
fve-b2.0r1-30949Fragaria vesca (Woodland Strawberry) 2.0Fvb4:31906863-31909085+878,6102,489.77CGAGGAACUGAAAAGCUGCAGCUsiRNA22ShortStack
fve-b2.0r1-33303Fragaria vesca (Woodland Strawberry) 2.0Fvb5:9913600-9913829+5,36315.20UUGACGAGGCUUUGUAUGGACAsiRNA22ShortStack
fve-b2.0r1-33987Fragaria vesca (Woodland Strawberry) 2.0Fvb5:12419963-12420182.14,00639.69UACCGUAGGAAGGCUUUUUGUCsiRNA22ShortStack
fve-b2.0r1-34227Fragaria vesca (Woodland Strawberry) 2.0Fvb5:13312241-13312264+3541.00UCUGGUAAAUCAUUGAUUCGAUsiRNA22ShortStack
fve-b2.0r1-34354Fragaria vesca (Woodland Strawberry) 2.0Fvb5:13721987-13722171.5901.67UCUGGUAAAUCAUUGAUUCGAUsiRNA22ShortStack
fve-b2.0r1-34411Fragaria vesca (Woodland Strawberry) 2.0Fvb5:13906083-13906652-74,979212.47UCUUGCCGAUACCUCCCAUUCCsiRNA22ShortStack
fve-b2.0r1-34965Fragaria vesca (Woodland Strawberry) 2.0Fvb5:16102397-16102545.370.11UAAUACCCGGCGAUCUGAUCUCsiRNA22ShortStack
fve-b2.0r1-35153Fragaria vesca (Woodland Strawberry) 2.0Fvb5:16770617-16770638-2,2176.28UUUCUACCUCCCUCGUCGGUGGsiRNA22ShortStack
fve-b2.0r1-35252Fragaria vesca (Woodland Strawberry) 2.0Fvb5:17119666-17120467.2,4857.04CAGUAGUGGAGGUCGUGUCACAsiRNA22ShortStack
fve-b2.0r1-35253Fragaria vesca (Woodland Strawberry) 2.0Fvb5:17120724-17122253.10,38629.43CCCGGAUUGAUCGAAUUUGAUUsiRNA22ShortStack
fve-b2.0r1-36029Fragaria vesca (Woodland Strawberry) 2.0Fvb5:20051265-20051287-4501.28UUCCACGUCAACAACUCUGCUGsiRNA22ShortStack
fve-b2.0r1-36090Fragaria vesca (Woodland Strawberry) 2.0Fvb5:20245493-20246174.8,36323.70CAUGUCCCUGCAUCUUGGUCGAsiRNA22ShortStack
fve-b2.0r1-36781Fragaria vesca (Woodland Strawberry) 2.0Fvb5:22606053-22608231-83,578236.84UUCCACUCUGUAUCAAAGCUGsiRNA22ShortStack
fve-b2.0r1-38705Fragaria vesca (Woodland Strawberry) 2.0Fvb6:511669-514560-342,900971.70CUUAGUUGUUAGAGAAGGGGAsiRNA22ShortStack
fve-b2.0r1-38716Fragaria vesca (Woodland Strawberry) 2.0Fvb6:600979-603092-23,01665.22CAGAAAGUUACUGAGCAUGGAGsiRNA22ShortStack
fve-b2.0r1-39100Fragaria vesca (Woodland Strawberry) 2.0Fvb6:2316471-2316503.4281.21UCUGGUAAAUCAUUGAUUCGAUsiRNA22ShortStack
fve-b2.0r1-39890Fragaria vesca (Woodland Strawberry) 2.0Fvb6:5338065-5339972+34,14296.75GUUAUUCUAUUCCACCUCUUAGsiRNA22ShortStack
fve-b2.0r1-41113Fragaria vesca (Woodland Strawberry) 2.0Fvb6:9700983-9705639.349,483990.35CAACUUUUAGUCAAAUGGUGGGAsiRNA22ShortStack
fve-b2.0r1-41643Fragaria vesca (Woodland Strawberry) 2.0Fvb6:11372692-11373199-2,6517.51UGUGGCAGUUGAAGAAUUUGAGsiRNA22ShortStack
fve-b2.0r1-43019Fragaria vesca (Woodland Strawberry) 2.0Fvb6:16013857-16014804+1,9495.52UUCACCUGGACCAUAACUGACCmiR11294siRNA22ShortStack
fve-b2.0r1-44237Fragaria vesca (Woodland Strawberry) 2.0Fvb6:20359909-20360079-1,7094.84UUCACCUGGACCAUAACUGACCmiR11294siRNA22ShortStack
fve-b2.0r1-45202Fragaria vesca (Woodland Strawberry) 2.0Fvb6:23629159-23629742.1,2083.42AAUUUGGGCCAAAAUAACUUUUsiRNA22ShortStack
fve-b2.0r1-45408Fragaria vesca (Woodland Strawberry) 2.0Fvb6:24348908-24349031-6591.87UCAUACUCGUGCUCCCAGAAUsiRNA22ShortStack
fve-b2.0r1-47700Fragaria vesca (Woodland Strawberry) 2.0Fvb6:32643439-32643764.1,2093.43CCUUGGACAAUGAAGCAUGACCsiRNA22ShortStack
fve-b2.0r1-47713Fragaria vesca (Woodland Strawberry) 2.0Fvb6:32676387-32676703.1,1853.36UCUGAAUGGCAGUGACCCGGAsiRNA22ShortStack
fve-b2.0r1-48494Fragaria vesca (Woodland Strawberry) 2.0Fvb6:36028461-36028832-6,68218.94UAUGUCGCAGGAGAGAUGGUACsiRNA22ShortStack
fve-b2.0r1-48777Fragaria vesca (Woodland Strawberry) 2.0Fvb6:37409715-37409740-2110.60CAAUUCCCUUGUUUUUGUUCAAsiRNA22ShortStack
fve-b2.0r1-48865Fragaria vesca (Woodland Strawberry) 2.0Fvb6:37742217-37742512.6,92419.62UCGCCAAUUCCGCAUUCCUGGsiRNA22ShortStack
fve-b2.0r1-49808Fragaria vesca (Woodland Strawberry) 2.0Fvb7:2563901-2564322.8782.49UUUUUUAUCUUUGUUGGGCCUsiRNA22ShortStack
fve-b2.0r1-52496Fragaria vesca (Woodland Strawberry) 2.0Fvb7:13269252-13269368-4181.19ACUCGUAAUCGUGGACCUCCUCsiRNA22ShortStack
fve-b2.0r1-52911Fragaria vesca (Woodland Strawberry) 2.0Fvb7:14651097-14651207.5581.58GAACAAAUCAGAUAAGAAGGAUsiRNA22ShortStack
fve-b2.0r1-52913Fragaria vesca (Woodland Strawberry) 2.0Fvb7:14656338-14657443.1,8005.10AAGAAAAGAAAAACGGGUAsiRNA22ShortStack
fve-b2.0r1-53574Fragaria vesca (Woodland Strawberry) 2.0Fvb7:17519341-17519889+16,38946.44UUGCGGUCUUGUCUCUUCCAAUmiR11291siRNA22ShortStack
fve-b2.0r1-54236Fragaria vesca (Woodland Strawberry) 2.0Fvb7:20395081-20395769.58,891166.88CACGUGAUGGUUGAUAUGAAGAsiRNA22ShortStack
fve-b2.0r1-54237Fragaria vesca (Woodland Strawberry) 2.0Fvb7:20396017-20396327+1,3773.90CCACUGUAGGAUCAAGCUUAAGsiRNA22ShortStack
fve-b2.0r1-54706Fragaria vesca (Woodland Strawberry) 2.0Fvb7:22562850-22562951-3080.87UGAGAUACUCAUUUGAGCAAGmiR828siRNA22ShortStack
fve-b2.0r1-55429Fragaria vesca (Woodland Strawberry) 2.0FvbUn:1818988-1819169.6061.72UUGAGCACUAAACCAUGGCUGGsiRNA22ShortStack