het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Fragaria vesca (Woodland Strawberry) genome build 2.0 (fve-b2.0)

Version v2.0 of Fragaria vesca cv. Hawaii4 from The Genome Database for Rosaceae

Locus type


Warning: Undefined array key "ann_source" in /data/www/html/multiannotations.php on line 46

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
fve-MIR11289-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb1:4705767-4705890-44,897127.23UGCUUCAAGUCUGGCCAAUACUmiR11289nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-3926Fragaria vesca (Woodland Strawberry) 2.0Fvb1:15935853-15935988-3941.12AUUCGUCGGCUAAAGUUUGGCAGAnearMIRNAShortStack
fve-b2.0r1-8301Fragaria vesca (Woodland Strawberry) 2.0Fvb2:8190594-8190715+8,58824.34UGUCAAUCUGGAUCACUAUUCmiR11304nearMIRNAShortStack
fve-MIR11304-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb2:8190611-8190719+8,58724.33UGUCAAUCUGGAUCACUAUUCmiR11304nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-15391Fragaria vesca (Woodland Strawberry) 2.0Fvb3:7698008-7698031+5411.53UGAACUUAUUGCAACUAGCUUmiR7125nearMIRNAShortStack
fve-MIR156f-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb3:30158470-30158600+13,62138.60UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAmiRBase22-BestBlastHit
fve-MIR166b-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb4:2444130-2444270-1520.43GGAAUGCUGGCUGGUUCGAGAmiR166nearMIRNAmiRBase22-BestBlastHit
fve-MIR169f-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb4:7675315-7675469-690.20UGAGCCAAGAAUGACUUGCUGmiR169nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-24589Fragaria vesca (Woodland Strawberry) 2.0Fvb4:7676751-7676863+3,2259.14CGGUAUAGUCUUUCCUGAGCUCUUnearMIRNAShortStack
fve-b2.0r1-26899Fragaria vesca (Woodland Strawberry) 2.0Fvb4:16144552-16144582+2880.82UGAUUUGAUGAUCGUUAAGGCnearMIRNAShortStack
fve-b2.0r1-28272Fragaria vesca (Woodland Strawberry) 2.0Fvb4:20996574-20996594-2,4877.05UUCCACAGGCUUUCUUGAACUmiR396nearMIRNAShortStack
fve-b2.0r1-28544Fragaria vesca (Woodland Strawberry) 2.0Fvb4:22002773-22002985+4011.14AGUGUGGAUUGUAAAGUUAGGAGCnearMIRNAShortStack
fve-b2.0r1-29510Fragaria vesca (Woodland Strawberry) 2.0Fvb4:25632143-25632303+8,99825.50UGAGGAUAAAGAGCUUGUUUUnearMIRNAShortStack
fve-b2.0r1-29837Fragaria vesca (Woodland Strawberry) 2.0Fvb4:26905513-26905695-7752.20UUUCAAUACUCUAGAGCACUGUAUnearMIRNAShortStack
fve-b2.0r1-30412Fragaria vesca (Woodland Strawberry) 2.0Fvb4:29370454-29370481+7962.26CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAShortStack
fve-MIR11306-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb4:32261826-32261978-5781.64CUACCGAAGAACUUUGCAAAAGmiR11306nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-31012Fragaria vesca (Woodland Strawberry) 2.0Fvb4:32261836-32261961-5751.63CUACCGAAGAACUUUGCAAAAGmiR11306nearMIRNAShortStack
fve-b2.0r1-31574Fragaria vesca (Woodland Strawberry) 2.0Fvb5:2538526-2538549+1,8175.15ACUCUCCCUCAAGGGCUUCUCmiR477nearMIRNAShortStack
fve-b2.0r1-31575Fragaria vesca (Woodland Strawberry) 2.0Fvb5:2538624-2538645+5551.57UGGAGCCUGCGAGGGGGAAUGAmiR477nearMIRNAShortStack
fve-b2.0r1-36390Fragaria vesca (Woodland Strawberry) 2.0Fvb5:21208271-21208465-5211.48AUUCGUCGGCUAAAGUUUGGCAGAnearMIRNAShortStack
fve-b2.0r1-36911Fragaria vesca (Woodland Strawberry) 2.0Fvb5:23038746-23038784-2590.73AAACAUGAUUAGUCAGACGUAUCAnearMIRNAShortStack
fve-MIR167b-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb6:1652157-1652239-26,89476.21UGAAGCUGCCAGCAUGAUCUAmiR167nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-39235Fragaria vesca (Woodland Strawberry) 2.0Fvb6:2842880-2842902-3450.98UUUUAAUGGAGUCGGUAAGAGCCnearMIRNAShortStack
fve-MIR159c-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb6:3518809-3519024-42,474120.36UUGGAUUGAAGGGAGCUCCCmiR159nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-39403Fragaria vesca (Woodland Strawberry) 2.0Fvb6:3518826-3519003-42,474120.36UUGGAUUGAAGGGAGCUCCCmiR159nearMIRNAShortStack
fve-MIR11308-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb6:5581687-5581790+1910.54UAAGUUAGGAUUCUAGUUACCmiR11308nearMIRNAmiRBase22-BestBlastHit
fve-MIR11286-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb6:9699605-9699680+342,853971.56UUGGAGAGAGAGUAGACAAUGmiR11286nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-41697Fragaria vesca (Woodland Strawberry) 2.0Fvb6:11552993-11553013+1700.48AGGUGCAGGUGUAAGUGCAGAmiR530nearMIRNAShortStack
fve-b2.0r1-44586Fragaria vesca (Woodland Strawberry) 2.0Fvb6:21396584-21396674+5,00114.17UUUCGGAAUUUGGUAGACAACnearMIRNAShortStack
fve-b2.0r1-46015Fragaria vesca (Woodland Strawberry) 2.0Fvb6:26617185-26617408+2,8538.09AAGAGAUUUAAAUGGGUGUACUGUnearMIRNAShortStack
fve-b2.0r1-48186Fragaria vesca (Woodland Strawberry) 2.0Fvb6:34660236-34660269+3851.09UGUACUGUAAGUUUUUUCUGAnearMIRNAShortStack
fve-b2.0r1-48337Fragaria vesca (Woodland Strawberry) 2.0Fvb6:35357897-35357918-1,8245.17CAGCCAAGGAUGACUUGCCGGmiR169nearMIRNAShortStack
fve-MIR3627b-m1Fragaria vesca (Woodland Strawberry) 2.0Fvb6:36030272-36030399+7492.12UCGCAGGAGAGAUGGCACUACCmiR3627nearMIRNAmiRBase22-BestBlastHit
fve-b2.0r1-48495Fragaria vesca (Woodland Strawberry) 2.0Fvb6:36030276-36030551+1,0182.89UCGCAGGAGAGAUGGCACUACCmiR3627nearMIRNAShortStack
fve-b2.0r1-48498Fragaria vesca (Woodland Strawberry) 2.0Fvb6:36035182-36035205+1,1123.15UGUCGCAGGAGAGAUGGCACGmiR3627nearMIRNAShortStack
fve-b2.0r1-52192Fragaria vesca (Woodland Strawberry) 2.0Fvb7:12206553-12206757+1,0542.99CUGAGAAGGCCUGUAUAUAUAUnearMIRNAShortStack
fve-b2.0r1-53665Fragaria vesca (Woodland Strawberry) 2.0Fvb7:17876374-17876394-2280.65UGCCAAACGUGCCAUUGUUGAnearMIRNAShortStack
fve-b2.0r1-53726Fragaria vesca (Woodland Strawberry) 2.0Fvb7:18069888-18069908-2200.62UGCCAAACGUGCCAUUGUUGAnearMIRNAShortStack