Version IRGSP-1.0 of Oryza sativa ssp. Japonica cv. Nipponbare from Ensembl Plants
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accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
---|---|---|---|---|---|---|---|---|---|---|
rice_all_reference_set | 1,269,104,472 | 462,001,271 | none | 1 | mixed | mixed | mixed | refset1 | 1 | merge of 128 libraries - reference set 1 |
accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
---|---|---|---|---|---|---|---|---|---|---|
ERR037689 | 14,942,641 | 4,422,750 | SRA | 0 | leaf | Nipponbare | wt | A | 1 | leaf (14-days-old plants) - cold stress |
GSM816721 | 2,334,789 | 716,327 | GEO | 0 | shoot | Nipponbare | wt | AA | 1 | shoot (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - KH2PO4 deficiency |
GSM816723 | 2,037,831 | 905,087 | GEO | 0 | shoot | Nipponbare | wt | AB | 1 | shoot (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - SO4 deficiency (substituted with Cl2) |
GSM816725 | 2,608,741 | 600,706 | GEO | 0 | shoot | Nipponbare | wt | AC | 1 | shoot (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - NH4NO3 and KNO3 deficiency (KNO3 substituted with KCl) |
GSM816727 | 3,451,074 | 602,202 | GEO | 0 | shoot | Nipponbare | wt | AD | 1 | shoot (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - KNO3 deficiency |
GSM816729 | 2,577,608 | 414,442 | GEO | 0 | shoot | Nipponbare | wt | AE | 1 | shoot (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - KNO3 deficiency and salt stress |
GSM816731 | 3,600,195 | 951,516 | GEO | 0 | inflorescence | Nipponbare | wt | AF | 1 | panicle (15 cm long and wrapped with panicle sheath) - control conditions |
GSM816732 | 3,363,604 | 1,080,776 | GEO | 0 | inflorescence | Nipponbare | wt | AF | 1 | panicle (15 cm long and wrapped with panicle sheath) - control conditions |
GSM816734 | 3,548,705 | 881,860 | GEO | 0 | inflorescence | Nipponbare | wt | AG | 1 | panicle (15 cm long and wrapped with panicle sheath) - drought stress |
GSM816735 | 3,427,274 | 827,349 | GEO | 0 | inflorescence | Nipponbare | wt | AG | 1 | panicle (15 cm long and wrapped with panicle sheath) - drought stress |
GSM816737 | 3,778,388 | 1,006,970 | GEO | 0 | inflorescence | Nipponbare | wt | AH | 1 | panicle (15 cm long and wrapped with panicle sheath) - salt stress |
GSM816738 | 3,442,388 | 1,076,427 | GEO | 0 | inflorescence | Nipponbare | wt | AH | 1 | panicle (15 cm long and wrapped with panicle sheath) - salt stress |
GSM816740 | 2,433,826 | 631,083 | GEO | 0 | inflorescence | Nipponbare | wt | AI | 1 | panicle (15 cm long and wrapped with panicle sheath) - cold stress |
SRR037238 | 5,469,839 | 2,247,480 | SRA | 0 | seedling | Nipponbare | wt | AJ | 1 | seedling - control conditions |
SRR089619 | 6,019,614 | 1,353,969 | SRA | 0 | inflorescence | Nipponbare | wt | AK | 1 | inflorescence (90-days-old plants - mature inflorescence - 14-17 cm long - stage In 9 - composed by rachis - branches and spikelets) - control conditions |
SRR089620 | 4,679,325 | 1,348,714 | SRA | 0 | inflorescence | Nipponbare | wt | AL | 1 | inflorescence (90-days-old plants - mature inflorescence - 14-17 cm long - stage In 9 - composed by rachis - branches and spikelets) - drought stress |
SRR089621 | 3,736,975 | 1,043,579 | SRA | 0 | inflorescence | Nipponbare | wt | AM | 1 | inflorescence (90-days-old plants - mature inflorescence - 14-17 cm long - stage In 9 - composed by rachis - branches and spikelets) - cold stress |
SRR089622 | 4,304,013 | 1,159,744 | SRA | 0 | inflorescence | Nipponbare | wt | AN | 1 | inflorescence (90-days-old plants - mature inflorescence - 14-17 cm long - stage In 9 - composed by rachis - branches and spikelets) - salt stress |
SRR1036340 | 5,784,821 | 9,698,427 | SRA | 0 | root | Nipponbare | wt | AO | 1 | root (2-weeks-old plants) - phosphate deficiency for 21 days |
SRR1036342 | 5,398,202 | 7,721,889 | SRA | 0 | root | Nipponbare | wt | AO | 1 | root (2-weeks-old plants) - phosphate deficiency for 21 days |
SRR1036344 | 2,383,491 | 3,791,052 | SRA | 0 | root | Nipponbare | wt | AO | 1 | root (2-weeks-old plants) - phosphate deficiency for 21 days |
SRR1036341 | 36,298,557 | 9,913,720 | SRA | 0 | shoot | Nipponbare | wt | AP | 1 | shoot (2-weeks-old plants) - phosphate deficiency for 21 days |
SRR1036343 | 34,503,765 | 9,276,233 | SRA | 0 | shoot | Nipponbare | wt | AP | 1 | shoot (2-weeks-old plants) - phosphate deficiency for 21 days |
SRR1036345 | 77,840,989 | 27,384,324 | SRA | 0 | shoot | Nipponbare | wt | AP | 1 | shoot (2-weeks-old plants) - phosphate deficiency for 21 days |
SRR1036346 | 4,196,125 | 6,745,407 | SRA | 0 | root | Nipponbare | wt | AQ | 1 | root (2-weeks-old plants) - control conditions for 21 days |
SRR1036348 | 3,027,457 | 5,900,888 | SRA | 0 | root | Nipponbare | wt | AQ | 1 | root (2-weeks-old plants) - control conditions for 21 days |
SRR1036350 | 2,010,078 | 4,339,800 | SRA | 0 | root | Nipponbare | wt | AQ | 1 | root (2-weeks-old plants) - control conditions for 21 days |
SRR1036347 | 32,192,128 | 9,803,851 | SRA | 0 | shoot | Nipponbare | wt | AR | 1 | shoot (2-weeks-old plants) - control conditions for 21 days |
SRR1036349 | 37,067,748 | 10,733,466 | SRA | 0 | shoot | Nipponbare | wt | AR | 1 | shoot (2-weeks-old plants) - control conditions for 21 days |
SRR1036351 | 54,891,672 | 14,799,364 | SRA | 0 | shoot | Nipponbare | wt | AR | 1 | shoot (2-weeks-old plants) - control conditions for 21 days |
SRR1555746 | 14,399,436 | 6,722,821 | SRA | 0 | root | Nipponbare | wt | AS | 1 | root (7-days-old plants) - control conditions |
SRR1555747 | 10,959,907 | 8,703,952 | SRA | 0 | root | Nipponbare | wt | AT | 1 | root (7-days-old plants) - cadmium stress |
SRR1555749 | 19,634,848 | 1,933,873 | SRA | 0 | shoot | Nipponbare | wt | AU | 1 | shoot (7-days-old plants) - cadmium stress |
SRR1555751 | 15,818,933 | 1,505,845 | SRA | 0 | shoot | Nipponbare | wt | AV | 1 | shoot (7-days-old plants) - control conditions |
SRR1556011 | 10,948,141 | 10,357,936 | SRA | 0 | root | Nipponbare | wt | AW | 1 | root - cadmium stress |
SRR1556020 | 10,959,907 | 8,703,952 | SRA | 0 | root | Nipponbare | wt | AW | 1 | root - cadmium stress |
SRR1556014 | 14,399,436 | 6,722,821 | SRA | 0 | root | Nipponbare | wt | AX | 1 | root - control conditions |
SRR1556016 | 19,634,848 | 1,933,873 | SRA | 0 | shoot | Nipponbare | wt | AY | 1 | shoot - cadmium stress |
SRR1556018 | 15,818,933 | 1,505,845 | SRA | 0 | shoot | Nipponbare | wt | AZ | 1 | shoot - control conditions |
ERR037690 | 17,842,394 | 3,559,965 | SRA | 0 | leaf | Nipponbare | wt | B | 1 | leaf (14-days-old plants) - drought stress |
ERR037691 | 16,792,369 | 3,568,167 | SRA | 0 | leaf | Nipponbare | wt | B | 1 | leaf (14-days-old plants) - drought stress |
SRR1612403 | 8,165,117 | 3,977,662 | SRA | 0 | leaf | Nipponbare | wt | BA | 1 | leaf (fourth leaf at the four leaf stage) - control conditions |
SRR1612404 | 5,760,687 | 3,285,347 | SRA | 0 | leaf | Nipponbare | phyB | BB | 1 | leaf (fourth leaf at the four leaf stage) - control conditions |
SRR1654490 | 9,741,557 | 1,743,560 | SRA | 0 | leaf | Nipponbare | wt | BC | 1 | leaf (40-days-old plants - five-leaf and six-leaf stages) - control conditions |
SRR1654491 | 8,593,623 | 1,766,107 | SRA | 0 | leaf | Nipponbare | Osaba1-1 | BD | 1 | leaf (40-days-old plants - five-leaf and six-leaf stages) - control conditions |
SRR2544786 | 14,410,219 | 7,241,055 | SRA | 0 | embryo | Nipponbare | wt | BE | 1 | embryo (dry seed) - control conditions |
SRR2544787 | 20,325,181 | 6,242,183 | SRA | 0 | embryo | Nipponbare | wt | BF | 1 | embryo (12-hours-imbibed seed) - control conditions |
SRR2544788 | 16,405,607 | 4,474,791 | SRA | 0 | embryo | Nipponbare | wt | BG | 1 | embryo (24-hours-imbibed seed) - control conditions |
SRR4279834 | 4,356,173 | 2,080,748 | SRA | 0 | leaf | Nipponbare | wt | BH | 1 | leaf (10-days-old plants) - treated 3 days with non-viruliferous SBPHs (Laodelphax striatellus Fallen) |
SRR4279835 | 3,151,994 | 1,352,156 | SRA | 0 | leaf | Nipponbare | wt | BI | 1 | leaf (10-days-old plants) - treated 7 days with non-viruliferous SBPHs (Laodelphax striatellus Fallen) |
SRR4279836 | 6,677,731 | 2,150,923 | SRA | 0 | leaf | Nipponbare | wt | BJ | 1 | leaf (10-days-old plants) - treated 15 days with non-viruliferous SBPHs (Laodelphax striatellus Fallen) |
SRR4279837 | 4,247,373 | 1,363,748 | SRA | 0 | leaf | Nipponbare | wt | BK | 1 | leaf (10-days-old plants) - treated 3 days with viruliferous SBPHs (Laodelphax striatellus Fallen) |
SRR4279838 | 4,343,698 | 1,622,824 | SRA | 0 | leaf | Nipponbare | wt | BL | 1 | leaf (10-days-old plants) - treated 7 days with viruliferous SBPHs (Laodelphax striatellus Fallen) |
SRR4279839 | 5,949,613 | 2,638,482 | SRA | 0 | leaf | Nipponbare | wt | BM | 1 | leaf (10-days-old plants) - treated 15 days with viruliferous SBPHs (Laodelphax striatellus Fallen) |
SRR447127 | 3,047,182 | 2,116,978 | SRA | 0 | root | Nipponbare | wt | BN | 1 | root (14-days-old plants) - control conditions |
SRR447128 | 3,198,940 | 2,734,942 | SRA | 0 | root | Nipponbare | wt | BO | 1 | root (14-days-old plants) - treated with 20microM sodium arsenite for 6 hours |
SRR447129 | 2,956,765 | 1,211,562 | SRA | 0 | root | Nipponbare | wt | BP | 1 | root (14-days-old plants) - treated with 80microM sodium arsenite for 6 hours |
SRR447130 | 3,799,239 | 2,092,331 | SRA | 0 | root | Nipponbare | wt | BQ | 1 | root (14-days-old plants) - treated with 20microM sodium arsenite for 24 hours |
SRR447131 | 4,513,307 | 1,554,863 | SRA | 0 | root | Nipponbare | wt | BR | 1 | root (14-days-old plants) - treated with 80microM sodium arsenite for 24 hours |
SRR447132 | 3,010,013 | 1,505,091 | SRA | 0 | shoot | Nipponbare | wt | BS | 1 | shoot (14-days-old plants) - control conditions |
SRR447133 | 3,095,513 | 1,350,161 | SRA | 0 | shoot | Nipponbare | wt | BT | 1 | shoot (14-days-old plants) - treated with 20microM sodium arsenite for 6 hours |
SRR447134 | 3,027,835 | 2,109,599 | SRA | 0 | shoot | Nipponbare | wt | BU | 1 | shoot (14-days-old plants) - treated with 80microM sodium arsenite for 6 hours |
SRR447135 | 4,171,832 | 1,383,704 | SRA | 0 | shoot | Nipponbare | wt | BV | 1 | shoot (14-days-old plants) - treated with 20microM sodium arsenite for 24 hours |
SRR447136 | 2,774,378 | 1,024,543 | SRA | 0 | shoot | Nipponbare | wt | BW | 1 | shoot (14-days-old plants) - treated with 80microM sodium arsenite for 24 hours |
SRR504360 | 2,573,816 | 1,462,597 | SRA | 0 | leaf | Nipponbare | wt | BX | 1 | leaf (6-weeks-old plants - fully expanded leaf) - control conditions |
SRR643880 | 6,673,438 | 3,369,809 | SRA | 0 | leaf | Nipponbare | wt | BY | 1 | leaf (20-days-old plants) - mock inoculated with 0.2% gelatin - control |
SRR643881 | 5,867,905 | 2,404,732 | SRA | 0 | leaf | Nipponbare | wt | BZ | 1 | leaf (20-days-old plants) - inoculated with Magnaporthe oryzae 70-15 for 72 hours |
ERR037692 | 10,693,484 | 2,841,531 | SRA | 0 | leaf | Nipponbare | wt | C | 1 | leaf (14-days-old plants) - salt stress |
ERR037693 | 11,890,645 | 3,084,875 | SRA | 0 | leaf | Nipponbare | wt | C | 1 | leaf (14-days-old plants) - salt stress |
SRR643882 | 5,992,854 | 3,648,679 | SRA | 0 | leaf | Nipponbare | wt | CA | 1 | leaf (20-days-old plants) - inoculated with Magnaporthe oryzae 70-15 for 96 hours |
SRR711312 | 18,267,006 | 8,247,885 | SRA | 0 | leaf | Nipponbare | wt | CB | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711313 | 14,379,530 | 5,498,281 | SRA | 0 | leaf | Nipponbare | wt | CB | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711314 | 12,930,426 | 5,048,584 | SRA | 0 | leaf | Nipponbare | wt | CB | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711315 | 17,948,525 | 7,230,030 | SRA | 0 | leaf | Nipponbare | T2-PiZt-11-R blast resistance line | CC | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711316 | 15,694,357 | 6,203,793 | SRA | 0 | leaf | Nipponbare | T2-PiZt-11-S blast resistance line | CD | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711317 | 16,096,900 | 6,878,438 | SRA | 0 | leaf | Nipponbare | T4-PiZt-11-R blast resistance line | CE | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711318 | 19,012,422 | 7,410,228 | SRA | 0 | leaf | Nipponbare | T4-PiZt-11-S blast resistance line | CF | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711319 | 10,418,758 | 4,572,861 | SRA | 0 | leaf | Nipponbare | T6-PiZt-11-R blast resistance line | CG | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711320 | 12,148,764 | 7,191,645 | SRA | 0 | leaf | Nipponbare | T6-Pi9-R blast resistance line | CH | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR711321 | 12,014,600 | 6,998,992 | SRA | 0 | leaf | Nipponbare | T6-Spin1i-1-R RNAi line for owering time regulator Spin1 | CI | 1 | leaf (3-weeks-old plants - regenerated from tissue culture) - control conditions |
SRR771494 | 5,873,874 | 13,928,646 | SRA | 0 | root | Nipponbare | wt | CJ | 1 | root (3-weeks-old plants) - control conditions |
SRR771495 | 10,438,322 | 5,867,878 | SRA | 0 | root | Nipponbare | wt | CJ | 1 | root (3-weeks-old plants) - control conditions |
SRR771496 | 19,442,718 | 3,648,960 | SRA | 0 | shoot | Nipponbare | wt | CK | 1 | shoot (3-weeks-old plants) - control conditions |
SRR771497 | 15,738,268 | 7,905,670 | SRA | 0 | shoot | Nipponbare | wt | CK | 1 | shoot (3-weeks-old plants) - control conditions |
SRR771498 | 15,573,620 | 3,286,232 | SRA | 0 | endosperm | Nipponbare | wt | CL | 1 | endosperm (7-8 days after fertilization - milky stage endosperm) - control conditions |
SRR771499 | 20,413,217 | 3,438,444 | SRA | 0 | embryo | Nipponbare | wt | CM | 1 | embryo (7-8 days after fertilization) - control conditions |
SRR976171 | 25,633,072 | 5,286,094 | SRA | 0 | leaf | Nipponbare | wt | CN | 1 | leaf lamina joint (of flag leaf) - control conditions |
SRX016114 | 2,522,243 | 1,287,879 | SRA | 0 | shoot | Nipponbare | wt | CO | 1 | shoot (4-weeks-old plants - four-leaf stage) - control conditions |
SRR2154074 | 10,676,628 | 2,884,227 | SRA | 0 | seed | Nipponbare | wt | CP | 1 | seed (husks removed) - control conditions |
SRR2154080 | 9,663,862 | 1,640,398 | SRA | 0 | seedling | Nipponbare | wt | CQ | 1 | seedling (9-days-old plants) - control conditions |
SRR5049778 | 7,432,942 | 1,704,660 | SRA | 0 | anther | 02428-2x | wt | CR | 1 | anther (floret length: 2.6-2.8mm - pre-meiotic interphase) - control conditions |
SRR5049779 | 7,094,788 | 1,828,202 | SRA | 0 | anther | 02428-2x | wt | CS | 1 | anther (floret length: 3.8-4.0mm - meiosis) - control conditions |
SRR5049780 | 8,081,030 | 2,502,478 | SRA | 0 | anther | 02428-2x | wt | CT | 1 | anther (floret length: 5.0-5.5mm - single microspore stage) - control conditions |
SRR5049781 | 5,659,828 | 2,812,028 | SRA | 0 | anther | 02428-2x | wt | CU | 1 | anther (floret length: >6.5mm - bi-cellular pollen stage) - control conditions |
SRR5049786 | 7,246,086 | 1,579,856 | SRA | 0 | ovary | 02428-2x | wt | CV | 1 | ovary (floret length: 2.6-2.8mm - megasporocyte formation stage) - control conditions |
SRR5049787 | 6,762,456 | 2,264,835 | SRA | 0 | ovary | 02428-2x | wt | CW | 1 | ovary (floret length: 3.8-4.0mm - megasporocyte meiosis stage) - control conditions |
SRR5049788 | 8,608,349 | 1,506,988 | SRA | 0 | ovary | 02428-2x | wt | CX | 1 | ovary (floret length: 5.0-5.5mm - functional megaspore formation stage) - control conditions |
SRR5049789 | 5,960,438 | 2,000,504 | SRA | 0 | ovary | 02428-2x | wt | CY | 1 | ovary (floret length: >6.5mm - eight-nucleate embryo sac developing-stage) - control conditions |
SRR3234040 | 6,944,021 | 1,198,620 | SRA | 0 | anther | Taichung65-2x | wt | CZ | 1 | anther (floret length: 2.50-3.00mm - anther length: 0.75-0.85mm - pre-meiotic interphase) - control conditions |
ERR037694 | 15,070,600 | 3,249,948 | SRA | 0 | leaf | Nipponbare | wt | D | 1 | leaf (14-days-old plants) - control conditions |
ERR037695 | 16,527,354 | 3,674,454 | SRA | 0 | leaf | Nipponbare | wt | D | 1 | leaf (14-days-old plants) - control conditions |
SRR3234041 | 8,583,974 | 1,797,857 | SRA | 0 | anther | Taichung65-2x | wt | DA | 1 | anther (floret length: 3.80-4.30mm - anther length: 1.00-1.35mm - meiosis) - control conditions |
SRR3234042 | 6,466,800 | 2,622,523 | SRA | 0 | anther | Taichung65-2x | wt | DB | 1 | anther (floret length: 5.50-6.00mm - anther length: 1.40-1.55mm - single microspore stage) - control conditions |
ERR035782 | 2,984,135 | 2,083,669 | SRA | 0 | microspore | Zhonghua 10 | wt | DC | 1 | haploid uninucleate microspore (released from tetrades) - control conditions |
ERR035777 | 6,260,495 | 3,813,197 | SRA | 0 | pollen | Zhonghua 10 | wt | DD | 1 | bicellular pollen (pollen grains before PMII and after PMI) - control conditions |
ERR035781 | 6,998,610 | 4,994,884 | SRA | 0 | pollen | Zhonghua 10 | wt | DE | 1 | tricellular pollen (pollen grains after PMII but before dehydrated) - control conditions |
GSM1409671 | 10,198,311 | 3,025,481 | GEO | 0 | leaf | Nipponbare | wt | E | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with water for 2 hours - control |
GSM1409672 | 6,975,097 | 2,383,961 | GEO | 0 | leaf | Nipponbare | wt | F | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with water for 6 hours - control |
GSM1409673 | 8,391,607 | 2,209,298 | GEO | 0 | leaf | Nipponbare | wt | G | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with water for 12 hours - control |
GSM1409674 | 7,642,213 | 1,816,856 | GEO | 0 | leaf | Nipponbare | wt | H | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with water for 24 hours - control |
GSM1409675 | 7,369,268 | 2,335,299 | GEO | 0 | leaf | Nipponbare | wt | I | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with Xanthomonas oryzae pv. oryzae (Xoo) virulent strain PXO99 for 2 hours |
GSM1409676 | 9,858,079 | 2,892,108 | GEO | 0 | leaf | Nipponbare | wt | J | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with Xanthomonas oryzae pv. oryzae (Xoo) virulent strain PXO99 for 6 hours |
GSM1409677 | 9,275,620 | 2,900,903 | GEO | 0 | leaf | Nipponbare | wt | K | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with Xanthomonas oryzae pv. oryzae (Xoo) virulent strain PXO99 for 12 hours |
GSM1409678 | 11,597,523 | 2,813,442 | GEO | 0 | leaf | Nipponbare | wt | L | 1 | leaf (40-days-old-plants - at 1 cm below the infected loci) - treated with Xanthomonas oryzae pv. oryzae (Xoo) virulent strain PXO99 for 24 hours |
GSM278571 | 2,311,524 | 346,527 | GEO | 0 | seed | Nipponbare | wt | M | 1 | grain (1-5 days after fetilization - developing grain) - control conditions |
GSM278572 | 2,248,977 | 452,012 | GEO | 0 | seed | Nipponbare | wt | N | 1 | grain (6-10 days after fetilization - developing grain) - control conditions |
GSM562947 | 2,443,946 | 337,901 | GEO | 0 | inflorescence | Nipponbare | wt | O | 1 | panicle (young panicle - 4cm - mainly comprising the floral organs at differentiation stage In7) - control conditions |
GSM686039 | 10,284,328 | 2,522,387 | GEO | 0 | callus | Nipponbare | wt | P | 1 | undifferentiated callus - control conditions |
GSM686040 | 10,247,095 | 3,023,880 | GEO | 0 | callus | Nipponbare | wt | Q | 1 | differentiated callus - control conditions |
GSM816693 | 2,155,671 | 653,353 | GEO | 0 | seedling | Nipponbare | wt | R | 1 | seedling (2-weeks-old plants) - salt stress |
GSM816694 | 2,127,468 | 640,878 | GEO | 0 | seedling | Nipponbare | wt | S | 1 | seedling (2-weeks-old plants) - cold stress |
GSM816705 | 4,147,364 | 1,329,659 | GEO | 0 | root | Nipponbare | wt | T | 1 | root (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - control conditions |
GSM816707 | 4,809,967 | 1,023,317 | GEO | 0 | root | Nipponbare | wt | U | 1 | root (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - KH2PO4 deficiency |
GSM816709 | 3,881,242 | 1,284,955 | GEO | 0 | root | Nipponbare | wt | V | 1 | root (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - SO4 deficiency (substituted with Cl2) |
GSM816711 | 4,543,351 | 1,180,727 | GEO | 0 | root | Nipponbare | wt | W | 1 | root (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - NH4NO3 and KNO3 deficiency (KNO3 substituted with KCl) |
GSM816713 | 4,177,200 | 1,527,185 | GEO | 0 | root | Nipponbare | wt | X | 1 | root (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - KNO3 deficiency |
GSM816715 | 2,577,348 | 1,931,384 | GEO | 0 | root | Nipponbare | wt | Y | 1 | root (endosperm was first removed from 9-days-old seedlings to avoid nutrient transport - sampled after 5 days) - KNO3 deficiency and salt stress |
GSM816719 | 2,295,521 | 845,855 | GEO | 0 | shoot | Nipponbare | wt | Z | 1 | shoot (2-weeks-old plants) - control conditions |