het siRNAsData from Lunardon et al. (2020)miRNA

Genome and annotations summary

Oryza sativa (Rice) genome build 1.0 (osa-b1.0)

Version IRGSP-1.0 of Oryza sativa ssp. Japonica cv. Nipponbare from Ensembl Plants

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Download genome assembly FASTA file

BLAST search


Small RNA Loci

Click links below to show sub-sets of annotations

miRBase21Zhu_et_al_2008Song_et_al_2011Fei_et_al_2016ShortStack
MIRNA19200090
nearMIRNA2100196
siRNA20400081
siRNA2182411,8043,780
siRNA2215000410
siRNA23300074
siRNA241870059126,899
OtherRNA71002914,908
NotExpressed10000


Small RNA-seq data

Reference Set

accessionaligned readsunaligned readssource dbis refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.tissueecotype / cultivargenotypereplicate id Alignments that are biological replicates have the same replicate idsrefset id If set, the alignment is part of the indicated reference setdescription
rice_all_reference_set1,269,104,472462,001,271none1mixedmixedmixedrefset11merge of 128 libraries - reference set 1

Invidiual alignments (128)