het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Oryza sativa (Rice) genome build 1.0 (osa-b1.0)

Version IRGSP-1.0 of Oryza sativa ssp. Japonica cv. Nipponbare from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
osa-b1.0r1-2708Oryza sativa (Rice) 1.01:6563766-6563788-7190.42AUUGGAUUGAAGGGAGCUCCmiR159siRNA20ShortStack
osa-b1.0r1-3394Oryza sativa (Rice) 1.01:8119527-8119547+1510.09GAAACUAGGUUGCUAGAAUCsiRNA20ShortStack
osa-b1.0r1-4101Oryza sativa (Rice) 1.01:9760716-9760739-1,8801.09AUUGGAUUGAAGGGAGCUCCmiR159siRNA20ShortStack
osa-b1.0r1-4518Oryza sativa (Rice) 1.01:10696314-10696333-600.04CGGGCAGGCAGGGCGGACAGsiRNA20ShortStack
osa-b1.0r1-6198Oryza sativa (Rice) 1.01:14799857-14799876-1600.09AGGACACGUGCAAUCCGGCGsiRNA20ShortStack
osa-b1.0r1-10515Oryza sativa (Rice) 1.01:26165899-26165965+1,0870.63UUCCUUGACUCAGUUGAUAGsiRNA20ShortStack
osa-b1.0r1-13729Oryza sativa (Rice) 1.01:34356670-34356689-1170.07UGGAGCAGUAGUAAACCCGGsiRNA20ShortStack
osa-b1.0r1-14185Oryza sativa (Rice) 1.01:35523604-35523623-8270.48AGGCAUGGAACGGAGCCACCsiRNA20ShortStack
osa-b1.0r1-14954Oryza sativa (Rice) 1.01:37530655-37530731-4480.26CGGUCGGCGGGAGCUGAAGCsiRNA20ShortStack
osa-b1.0r1-16050Oryza sativa (Rice) 1.01:40334813-40335238-7,3204.23UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-16103Oryza sativa (Rice) 1.01:40443315-40443824+16,1269.32UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
osa-b1.0r1-19557Oryza sativa (Rice) 1.010:6036612-6036647-1990.12UUCGCACAACACAACUCACUsiRNA20ShortStack
osa-b1.0r1-21212Oryza sativa (Rice) 1.010:10900436-10900457+1410.08CCGGGCGGUCCGGGGGGGGGsiRNA20ShortStack
osa-b1.0r1-21898Oryza sativa (Rice) 1.010:12404582-12404605-1160.07GGGUCCCACCGGGCGUGCCAsiRNA20ShortStack
osa-b1.0r1-22647Oryza sativa (Rice) 1.010:14234036-14234056+1530.09CUUCUUUUCAAGAGAUGGUUsiRNA20ShortStack
osa-b1.0r1-23322Oryza sativa (Rice) 1.010:15807708-15807729.2010.12GUCUAUUAUAAUUGUAUGGUsiRNA20ShortStack
osa-b1.0r1-27346Oryza sativa (Rice) 1.011:2277724-2277743-2330.14UUGAGGACGACGGACUUGCGsiRNA20ShortStack
osa-b1.0r1-28504Oryza sativa (Rice) 1.011:4847281-4847312.5270.30UUCAUGCUCAACGUUUGACUsiRNA20ShortStack
osa-b1.0r1-29045Oryza sativa (Rice) 1.011:6085215-6085305-1,9041.10GGCCGGUCUUCUUGGCUAGCmiR169siRNA20ShortStack
osa-b1.0r1-29385Oryza sativa (Rice) 1.011:6973463-6973501.280.02GACGGGAUGGAGGAGGCUGUsiRNA20ShortStack
osa-b1.0r1-32826Oryza sativa (Rice) 1.011:16277510-16277945+20,58211.89CCAGGACGUGUGGGAUGGCAmiR2867siRNA20ShortStack
osa-b1.0r1-33427Oryza sativa (Rice) 1.011:17631814-17631895+2,4441.41UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-34100Oryza sativa (Rice) 1.011:19094491-19094511+320.02GUUGUAUUUAUUAGUUUUGACCsiRNA20ShortStack
osa-b1.0r1-37138Oryza sativa (Rice) 1.011:25858608-25858628-2,0621.19AAGCCGAGUAGUACUAAUUAsiRNA20ShortStack
osa-b1.0r1-37959Oryza sativa (Rice) 1.011:28079910-28079929+2960.17UGAAGCUCCAGCAUGAUCUAsiRNA20ShortStack
osa-b1.0r1-40980Oryza sativa (Rice) 1.012:6671383-6671405+680.04CCCCCCUACCUGGCGCGCCAsiRNA20ShortStack
osa-b1.0r1-41886Oryza sativa (Rice) 1.012:8911032-8911183-1,9031.10UAUUAUAAGACGUUUUGACUsiRNA20ShortStack
osa-b1.0r1-43292Oryza sativa (Rice) 1.012:13349065-13350624.167,91897.00UUUGUACCGCGUGCAUUACUsiRNA20ShortStack
osa-b1.0r1-50171Oryza sativa (Rice) 1.02:3170502-3170564-2200.13GUGGGUGGUGGGUGGUGUAGsiRNA20ShortStack
osa-b1.0r1-50506Oryza sativa (Rice) 1.02:4077214-4077288-2,3091.33UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-50707Oryza sativa (Rice) 1.02:4512693-4513103-40,012,53223,113.86UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-52822Oryza sativa (Rice) 1.02:9393544-9393600-2680.16ACUUCCUCCUCCCGCCGCCUsiRNA20ShortStack
osa-b1.0r1-54811Oryza sativa (Rice) 1.02:14338713-14338759-3790.22UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-56647Oryza sativa (Rice) 1.02:18903977-18903997+4630.27AUGGACAUGAACCGGAGGCAsiRNA20ShortStack
osa-b1.0r1-57114Oryza sativa (Rice) 1.02:19950723-19951300-3,3131.91UUUUGAUCCCUUCCAUGCCUsiRNA20ShortStack
osa-b1.0r1-57634Oryza sativa (Rice) 1.02:21067863-21067890-6670.39GUCCUUAACAACUCAAUUAGsiRNA20ShortStack
osa-b1.0r1-57823Oryza sativa (Rice) 1.02:21566262-21566530-1,3990.81UCCGCGUCGUCCACGGAGAGsiRNA20ShortStack
osa-b1.0r1-57906Oryza sativa (Rice) 1.02:21716607-21716647-4050.23UUUUCGAACAACGUUUGACUsiRNA20ShortStack
osa-b1.0r1-58755Oryza sativa (Rice) 1.02:23614248-23614267+430.03AGCGGGCAGCGCCACGACGCsiRNA20ShortStack
osa-b1.0r1-58942Oryza sativa (Rice) 1.02:24119892-24120239-1,297,658749.61UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-61863Oryza sativa (Rice) 1.02:31511076-31511096-7010.41UGGAAGACUGGCAGAAAUGUsiRNA20ShortStack
osa-b1.0r1-65361Oryza sativa (Rice) 1.03:4959111-4959132+2980.17UGAAGUGUUUGGGGGAACUCmiR395siRNA20ShortStack
osa-b1.0r1-65827Oryza sativa (Rice) 1.03:6148580-6148950+7,3454.24GCAACUGUAGAAUAGCCCAGsiRNA20ShortStack
osa-b1.0r1-66822Oryza sativa (Rice) 1.03:8700270-8700298-2,9561.71UCAUACACUAGUAGUCUGUUsiRNA20ShortStack
osa-b1.0r1-69890Oryza sativa (Rice) 1.03:16087421-16087634.1,1440.66UAGGAUGAAAAAUGAUGUUUsiRNA20ShortStack
osa-MIR435Oryza sativa (Rice) 1.03:18209450-18209581+19,75311.41UUAUCCGGUAUUGGAGUUGAmiR435siRNA20miRBase21
osa-b1.0r1-70908Oryza sativa (Rice) 1.03:18209465-18209646+19,79411.43UUAUCCGGUAUUGGAGUUGAmiR435siRNA20ShortStack
osa-b1.0r1-71173Oryza sativa (Rice) 1.03:19217789-19217859+1570.09GUUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack
osa-b1.0r1-74538Oryza sativa (Rice) 1.03:27260841-27260937-2,2871.32CGGGGAUUUAAUACACAUAUsiRNA20ShortStack
osa-b1.0r1-78255Oryza sativa (Rice) 1.03:36357445-36357714+8,1904.73UUGACGGAUACUUUAAUUUCsiRNA20ShortStack
osa-b1.0r1-82062Oryza sativa (Rice) 1.04:12606337-12606410+2410.14UAUGUUUGUGAACUUUGAUGsiRNA20ShortStack
osa-b1.0r1-82898Oryza sativa (Rice) 1.04:14777651-14777745.4920.28UUUUCGAACAACGUUUGACUsiRNA20ShortStack
osa-b1.0r1-88279Oryza sativa (Rice) 1.04:27617297-27617323-13,4977.80UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-89110Oryza sativa (Rice) 1.04:29715778-29716161.4,8122.78UUUUGACUGUUCGUCUUAUAsiRNA20ShortStack
osa-b1.0r1-89857Oryza sativa (Rice) 1.04:31804067-31805648-27,31915.78UGAAGUGUUUGGGGGAACUCmiR395siRNA20ShortStack
osa-MIR395gOryza sativa (Rice) 1.04:31804633-31804718.1,3770.80UGAAGUGUUUGGGGGAACUCmiR395siRNA20miRBase21
osa-b1.0r1-90103Oryza sativa (Rice) 1.04:32621983-32623323+45,00026.00UGAAGUGUUUGGGGGAACUCmiR395siRNA20ShortStack
osa-MIR395sOryza sativa (Rice) 1.04:32622943-32623028.3,5682.06UGAAGUGUUUGGGGGAACUCmiR395siRNA20miRBase21
osa-b1.0r1-90362Oryza sativa (Rice) 1.04:33310199-33310294.3370.20UUAGACACUAAUUUAGAGUUsiRNA20ShortStack
osa-b1.0r1-92058Oryza sativa (Rice) 1.05:2350905-2350924-570.03CAUAUUAUUCUCUGAUGCAAsiRNA20ShortStack
osa-b1.0r1-101666Oryza sativa (Rice) 1.05:27511882-27511999-1,6210.94GAUGCUGACUUCUAUUGUAGsiRNA20ShortStack
osa-b1.0r1-103132Oryza sativa (Rice) 1.06:1561714-1561875+32,67918.88GGCAGCUCUCCUCUGGCAGGmiR399siRNA20ShortStack
osa-b1.0r1-103610Oryza sativa (Rice) 1.06:2811295-2811314+1410.08UAAUAAAGAGGGCGCAAAAGsiRNA20ShortStack
osa-b1.0r1-103779Oryza sativa (Rice) 1.06:3236086-3236107+3,1301.81UUGACAGAAGAGCGUGAGCCCsiRNA20ShortStack
osa-b1.0r1-108572Oryza sativa (Rice) 1.06:14523230-14523250+2090.12CCCCCCUACCUGGCGCGCCAsiRNA20ShortStack
osa-b1.0r1-112081Oryza sativa (Rice) 1.06:23714489-23715211-1,167,589674.48GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
osa-b1.0r1-113329Oryza sativa (Rice) 1.06:26465766-26465785-1810.11UUGUAUAGGACUGAUUUUUUsiRNA20ShortStack
osa-b1.0r1-113748Oryza sativa (Rice) 1.06:27388144-27388178+4530.26UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-114024Oryza sativa (Rice) 1.06:27969047-27969067+3460.20UGACAGAAGAGAGCGAGCGCmiR156siRNA20ShortStack
osa-b1.0r1-115132Oryza sativa (Rice) 1.06:30954725-30954758+1,5770.91ACACAAGAAGUAGUUCGUCAsiRNA20ShortStack
osa-b1.0r1-115511Oryza sativa (Rice) 1.07:666652-666671-560.03AUAUGCUUUGCUGGAAGGUAsiRNA20ShortStack
osa-b1.0r1-116424Oryza sativa (Rice) 1.07:2715119-2715138-3500.20UGGACGACAGGCGAGGGCGCsiRNA20ShortStack
osa-b1.0r1-118634Oryza sativa (Rice) 1.07:7796246-7796265-2090.12AGAUCUUGAUGAUGCUGCAUsiRNA20ShortStack
osa-b1.0r1-120811Oryza sativa (Rice) 1.07:14669445-14669841+3,6912.13AUAGUUUCACUUUGGACACCsiRNA20ShortStack
osa-b1.0r1-122580Oryza sativa (Rice) 1.07:19100431-19100656+2,8731.66UGACAGAAGAGAGGGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-128207Oryza sativa (Rice) 1.08:3299098-3300269+164,67795.13UGAAGUGUUUGGGGGAACUCmiR395siRNA20ShortStack
osa-b1.0r1-129069Oryza sativa (Rice) 1.08:5343550-5343569+1740.10UGACAGAAGAGCUUGAGCACsiRNA20ShortStack
osa-b1.0r1-130425Oryza sativa (Rice) 1.08:9242917-9243065-2770.16ACGGAGACUUGCUUCACAUUsiRNA20ShortStack
osa-b1.0r1-137136Oryza sativa (Rice) 1.08:26505563-26505607-7680.44UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-MIR395tOryza sativa (Rice) 1.09:6607353-6607495.400.02UGAAGUGUUUGGGGAAACUCmiR395siRNA20miRBase21
osa-b1.0r1-142860Oryza sativa (Rice) 1.09:13024056-13024189-4930.29CCCCCCUACCUGGCGCGCCAsiRNA20ShortStack
osa-b1.0r1-142921Oryza sativa (Rice) 1.09:13183567-13183586-1020.06AGAAUUUGAUGAUGCUGCAUsiRNA20ShortStack
osa-b1.0r1-143760Oryza sativa (Rice) 1.09:15065126-15065453+377,208217.90UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-145759Oryza sativa (Rice) 1.09:19647783-19647871-2260.13UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
osa-b1.0r1-147100Oryza sativa (Rice) 1.0Syng_TIGR_008:10848-10867+2320.13UGAAGCUCCAGCAUGAUCUAsiRNA20ShortStack