het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Oryza sativa (Rice) genome build 1.0 (osa-b1.0)

Version IRGSP-1.0 of Oryza sativa ssp. Japonica cv. Nipponbare from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
osa-b1.0r1-70Oryza sativa (Rice) 1.01:237556-237583+1410.08GCUGCUGGGCUGUGGCCUUCGGCCnearMIRNAShortStack
osa-b1.0r1-1197Oryza sativa (Rice) 1.01:3151510-3151531-760.04UGCGGCCGUGCGGCACCCUGCUnearMIRNAShortStack
osa-b1.0r1-1599Oryza sativa (Rice) 1.01:4169444-4169515-4390.25AUGGGUUGAGGUGGUGGUGGUGCAnearMIRNAShortStack
osa-b1.0r1-2750Oryza sativa (Rice) 1.01:6677498-6677788-342,094197.62UUGGACUGAAGGGUGCUCCCUmiR319nearMIRNAShortStack
osa-MIR319bOryza sativa (Rice) 1.01:6677570-6677766-342,078197.61UUGGACUGAAGGGUGCUCCCUmiR319nearMIRNAmiRBase21
osa-MIR5143bOryza sativa (Rice) 1.01:8415808-8415998-1,1400.66UGUGGUAUGUUGGCAAUGUAGGAAmiR5143nearMIRNAmiRBase21
osa-b1.0r1-4934Oryza sativa (Rice) 1.01:11742292-11742312+4190.24ACGACGGUGUCGGCGGCGGUGnearMIRNAShortStack
osa-b1.0r1-6096Oryza sativa (Rice) 1.01:14513032-14513056-5830.34CGGCGGUGGAGGCGGAGGCGGnearMIRNAShortStack
osa-b1.0r1-6280Oryza sativa (Rice) 1.01:15049794-15049818+2930.17UGAUCUUGAGGCAGAAACUGAGmiR1861nearMIRNAShortStack
osa-b1.0r1-8822Oryza sativa (Rice) 1.01:22175644-22175672-9120.53UUCUGUAAACUUGGUCAAACUnearMIRNAShortStack
osa-b1.0r1-9171Oryza sativa (Rice) 1.01:22934985-22935103-5950.34UGGGAUAUGCUAGAAUGACUUnearMIRNAShortStack
osa-MIR1862aOryza sativa (Rice) 1.01:26192308-26192395+4490.26ACGAGGUUGGUUUAUUUUGGGACGmiR1862nearMIRNAmiRBase21
osa-b1.0r1-10528Oryza sativa (Rice) 1.01:26192316-26192385+4460.26ACGAGGUUGGUUUAUUUUGGGACGmiR1862nearMIRNAShortStack
osa-b1.0r1-11019Oryza sativa (Rice) 1.01:27467172-27467247-1980.11GAAUAUGGGAAAUGCUAGAAUGGCnearMIRNAShortStack
osa-b1.0r1-13551Oryza sativa (Rice) 1.01:33893284-33893345-4130.24UGACUUAGAUUGUCACGUCGGnearMIRNAShortStack
osa-b1.0r1-13706Oryza sativa (Rice) 1.01:34306110-34306135+1720.10AAUGAAUGGUCAAACAUGUGAnearMIRNAShortStack
osa-b1.0r1-17866Oryza sativa (Rice) 1.010:1734414-1734447-9770.56AACUUUUCAAACUUUGAUCAUCAAnearMIRNAShortStack
osa-b1.0r1-18542Oryza sativa (Rice) 1.010:3413433-3413555-5,2573.04UAGGUUUGUUUAUUUUGGGACGGAmiR1862nearMIRNAShortStack
osa-b1.0r1-20896Oryza sativa (Rice) 1.010:10314055-10314101-5820.34AUGAAUGUGGGCAGCGCUAGAAAGmiR11336nearMIRNAShortStack
osa-b1.0r1-21526Oryza sativa (Rice) 1.010:11596259-11596521-1,9831.15AAUUGACGUUUUGGACAAUGGCACnearMIRNAShortStack
osa-MIR5820Oryza sativa (Rice) 1.010:13982605-13982688+3,2941.90UGGCAGAGAUUGAUCGAGGAAmiR5820nearMIRNAmiRBase21
osa-b1.0r1-22561Oryza sativa (Rice) 1.010:14087332-14087586-7470.43UUGUGGCUCUAAUCAAUGAUUnearMIRNAShortStack
osa-b1.0r1-23182Oryza sativa (Rice) 1.010:15452614-15452689+2640.15ACGGCACAGGAGCAUGAACACGGCnearMIRNAShortStack
osa-b1.0r1-29046Oryza sativa (Rice) 1.011:6085371-6085447-57,24033.07UAGCCAAGAAUGACUUGCCUAmiR169nearMIRNAShortStack
osa-MIR2118rOryza sativa (Rice) 1.011:7810223-7810397-7,8694.55UUCCCAAUGCCUCCCAUGCCUAmiR2118nearMIRNAmiRBase21
osa-b1.0r1-29931Oryza sativa (Rice) 1.011:8362793-8362879-2,4391.41AGAUGUUGGUUUUAGAACCGGCACnearMIRNAShortStack
osa-b1.0r1-33731Oryza sativa (Rice) 1.011:18290874-18291011-5600.32UCAAGGACCGUAGAAUUUAUUUnearMIRNAShortStack
osa-b1.0r1-34727Oryza sativa (Rice) 1.011:20531010-20531250+1,7941.04UAUGACGCUGUUGACUUUUAUUnearMIRNAShortStack
osa-b1.0r1-35227Oryza sativa (Rice) 1.011:21710039-21710268+7620.44AGAAGGAGCGCUAGAGUAGCCAAGnearMIRNAShortStack
osa-b1.0r1-35752Oryza sativa (Rice) 1.011:22903983-22904216-9110.53AUGAAUAUGGGAAAUACUAGAAUGnearMIRNAShortStack
osa-b1.0r1-37879Oryza sativa (Rice) 1.011:27818138-27818224-1,9591.13UCGAGGACUGCAUCGACCACUnearMIRNAShortStack
osa-MIR1846cOryza sativa (Rice) 1.012:270780-270865+8010.46AGUGAGGAGGCCGGGGCCGCUmiR1846nearMIRNAmiRBase21
osa-b1.0r1-38656Oryza sativa (Rice) 1.012:858389-858603-4,1702.41UGAAUGGGACAAUGCUAGAAAGnearMIRNAShortStack
osa-b1.0r1-39251Oryza sativa (Rice) 1.012:2441341-2441387+1,2290.71GUGGGGCGGCGGUGGUGGCGGnearMIRNAShortStack
osa-b1.0r1-39761Oryza sativa (Rice) 1.012:3677578-3677648-8260.48AAGAACCUAGGACCAGAUGGGACAnearMIRNAShortStack
osa-b1.0r1-42931Oryza sativa (Rice) 1.012:12200167-12200256+8440.49AAGAACCUAGGACCGGAUGGGACGnearMIRNAShortStack
osa-b1.0r1-43166Oryza sativa (Rice) 1.012:12903593-12903835+1,8721.08GAUGAAUGGUCAAACGUUGGACAAnearMIRNAShortStack
osa-MIR5832Oryza sativa (Rice) 1.012:21168996-21169086+2,8701.66GCACUGAGAGUUCUUGCUGGAnearMIRNAmiRBase21
osa-b1.0r1-47157Oryza sativa (Rice) 1.012:23315075-23315130-2,1651.25CUGGUGGGUGGGUGGGGUUGCAnearMIRNAShortStack
osa-MIR5519Oryza sativa (Rice) 1.012:24358353-24358422+5,9433.43UGGCAGAAGUACUGGACUUAGmiR5519nearMIRNAmiRBase21
osa-b1.0r1-48999Oryza sativa (Rice) 1.012:27441472-27441750+9,4325.45UGGGAUAUGCUAGAAUGACUUnearMIRNAShortStack
osa-b1.0r1-50682Oryza sativa (Rice) 1.02:4459804-4460099+7390.43GUAGUUUUAUGAGAAUGGAGACACnearMIRNAShortStack
osa-b1.0r1-51817Oryza sativa (Rice) 1.02:7083373-7083481+1,0320.60AGGGAGGUUGGGGCGGAGGCGnearMIRNAShortStack
osa-b1.0r1-54392Oryza sativa (Rice) 1.02:13118521-13118549+3060.18AAAACGGACGGUCAAACAUUGGACnearMIRNAShortStack
osa-b1.0r1-54862Oryza sativa (Rice) 1.02:14500035-14500091+7430.43AUAAGACGGACAGUCAAACGUUGAmiR812nearMIRNAShortStack
osa-b1.0r1-55806Oryza sativa (Rice) 1.02:16986375-16986461-8920.52AAAUUCGGCGUGGAAAACUAUGGCnearMIRNAShortStack
osa-MIR169fOryza sativa (Rice) 1.02:18558299-18558512-86,30049.85UAGCCAAGGAUGACUUGCCUAmiR169nearMIRNAmiRBase21
osa-b1.0r1-56642Oryza sativa (Rice) 1.02:18892410-18892433-2930.17ACAGAAAAUGUCAACUCAAGCnearMIRNAShortStack
osa-b1.0r1-57008Oryza sativa (Rice) 1.02:19689826-19689849+5140.30ACUGUUGGAUAAAAAUUGACGCCUnearMIRNAShortStack
osa-b1.0r1-57138Oryza sativa (Rice) 1.02:20003225-20003348-6270.36GAAUAUGGGAAAUGCUAGAAUGGCnearMIRNAShortStack
osa-b1.0r1-58675Oryza sativa (Rice) 1.02:23430625-23430648+930.05GGAGGACUCUGGGCUUCCUGGCACnearMIRNAShortStack
osa-b1.0r1-62794Oryza sativa (Rice) 1.02:33929167-33929193+5560.32AGCAACCUAGGAUUGGAUUAGAUGnearMIRNAShortStack
osa-b1.0r1-63320Oryza sativa (Rice) 1.02:35375009-35375070+8220.48AAAUGAAUGUAGGCAAUACUAGAAnearMIRNAShortStack
osa-b1.0r1-63346Oryza sativa (Rice) 1.02:35464631-35464812-7180.42UUCGUCUCGCCGUUUACAUGCnearMIRNAShortStack
osa-MIR812hOryza sativa (Rice) 1.03:1164921-1165107-64,09937.03AAGACGGAUGAUUAAAGUUGGACAmiR812nearMIRNAmiRBase21
osa-b1.0r1-64266Oryza sativa (Rice) 1.03:2155879-2155899+2300.13UGGGAAGGGAUUAGCCGAACAnearMIRNAShortStack
osa-b1.0r1-65753Oryza sativa (Rice) 1.03:5960290-5960336-6540.38AGGCGGCGGGGUGGGUGACGGUnearMIRNAShortStack
osa-b1.0r1-66537Oryza sativa (Rice) 1.03:7885200-7885227+2450.14UCAAUAUGAACGUGGGAAAUAnearMIRNAShortStack
osa-b1.0r1-68089Oryza sativa (Rice) 1.03:11741617-11741643-4280.25AUAAGAUGGAUGAUAGUUAACGACnearMIRNAShortStack
osa-b1.0r1-69755Oryza sativa (Rice) 1.03:15807836-15807929+2,1301.23AAUGACUUACAUUGUGGAACGGAGnearMIRNAShortStack
osa-b1.0r1-69807Oryza sativa (Rice) 1.03:15901041-15901070+2160.13AAACUUUUUGAAUAAGACGAACGGnearMIRNAShortStack
osa-b1.0r1-69986Oryza sativa (Rice) 1.03:16261576-16261777+6,8433.95AGGCGGGGGCGGGCUCGACGGnearMIRNAShortStack
osa-b1.0r1-70812Oryza sativa (Rice) 1.03:17993405-17993670+1,1390.66UUAAUUCAUUGAUUGUUUUCAGnearMIRNAShortStack
osa-b1.0r1-73599Oryza sativa (Rice) 1.03:25248564-25248627+1,1180.65UGAGUUACGAAACAAGGGAGCUGCnearMIRNAShortStack
osa-b1.0r1-77529Oryza sativa (Rice) 1.03:34408563-34408594+5510.32UUUUUCUAUAGACUUGGUCAAACUmiR437nearMIRNAShortStack
osa-b1.0r1-78298Oryza sativa (Rice) 1.04:118163-118307+1,0700.62AUAAGAUGAAUGGUCAAACGUUAUnearMIRNAShortStack
osa-b1.0r1-81086Oryza sativa (Rice) 1.04:8756465-8756635+3,8222.21AUGAAUAUGGGAAAUACUAGAAUGnearMIRNAShortStack
osa-b1.0r1-81518Oryza sativa (Rice) 1.04:10799058-10799335+6410.37AUGGAUGUUAAUGAAUUUAGACACnearMIRNAShortStack
osa-b1.0r1-82663Oryza sativa (Rice) 1.04:14205184-14205208+1590.09UUACAACUUGUAGAAGUCGAUnearMIRNAShortStack
osa-b1.0r1-83547Oryza sativa (Rice) 1.04:16545703-16545810+8610.50UGUAUGUGGUCAAUGCUAGAAnearMIRNAShortStack
osa-b1.0r1-84709Oryza sativa (Rice) 1.04:19138316-19138340-9150.53AGUCCUCACGUGGGCAUAGUCUCCnearMIRNAShortStack
osa-b1.0r1-85012Oryza sativa (Rice) 1.04:19713544-19713706+4,5132.61UAUGAAUGUGGAAAAUGCCAGAAUnearMIRNAShortStack
osa-MIR2118nOryza sativa (Rice) 1.04:21661494-21661672-12,6467.31UUCCCGAUGCCUCCCAUUCCUAmiR2118nearMIRNAmiRBase21
osa-b1.0r1-89428Oryza sativa (Rice) 1.04:30636316-30636354-8410.49AGCAAAUCGUUGAUCAAAGCCUUGnearMIRNAShortStack
osa-b1.0r1-91582Oryza sativa (Rice) 1.05:1165854-1166109-4,6082.66AGAUGACGCUGUUGACUUUUAAnearMIRNAShortStack
osa-b1.0r1-95504Oryza sativa (Rice) 1.05:11894579-11894607+3230.19AUAUUGUCCAGUGUCAAUUGUGACnearMIRNAShortStack
osa-MIR5516bOryza sativa (Rice) 1.05:13962666-13962734-2,4711.43CUCAUUGCUUCGGUAGGCUGGmiR5516nearMIRNAmiRBase21
osa-b1.0r1-97907Oryza sativa (Rice) 1.05:18668362-18668504+2,1151.22GAUCUUGAGGCAGGAACUGAGmiR1861nearMIRNAShortStack
osa-MIR1861fOryza sativa (Rice) 1.05:18668398-18668513+2,0151.16GAUCUUGAGGCAGGAACUGAGmiR1861nearMIRNAmiRBase21
osa-b1.0r1-103613Oryza sativa (Rice) 1.06:2815350-2815615-2,4691.43AAAUGUGGAAAAUGCUAGAAUGGCnearMIRNAShortStack
osa-b1.0r1-103775Oryza sativa (Rice) 1.06:3216407-3216436+7380.43AAUAUGUAGCAACCUAGGAUGGGUnearMIRNAShortStack
osa-b1.0r1-107420Oryza sativa (Rice) 1.06:11732545-11732566-3040.18UCAUGUAUUAAUGAACGGAGGnearMIRNAShortStack
osa-MIR399fOryza sativa (Rice) 1.06:20888631-20888747-4160.24CGGGCCAUGUCUCCUUGGGCAGmiR399nearMIRNAmiRBase21
osa-b1.0r1-110774Oryza sativa (Rice) 1.06:20888641-20888736-4160.24CGGGCCAUGUCUCCUUGGGCAGmiR399nearMIRNAShortStack
osa-b1.0r1-111671Oryza sativa (Rice) 1.06:22962590-22962610-5060.29UCGCCGCGGCUGGCAUCAGCAnearMIRNAShortStack
osa-b1.0r1-112662Oryza sativa (Rice) 1.06:24996883-24996906-4960.29ACAAGAUUUGGUUAAACUUUUGAAnearMIRNAShortStack
osa-b1.0r1-112779Oryza sativa (Rice) 1.06:25242444-25242469-1,2240.71UGGGUGGGUGGAUGGAUGGAGCAnearMIRNAShortStack
osa-b1.0r1-115014Oryza sativa (Rice) 1.06:30556377-30556415+2380.14AAUAUUGGACUGCAAAUAUAGGGCnearMIRNAShortStack
osa-b1.0r1-122111Oryza sativa (Rice) 1.07:17881964-17882043-2,8731.66UGCCUUGACUGUUUGUAAAGnearMIRNAShortStack
osa-b1.0r1-123642Oryza sativa (Rice) 1.07:21639962-21640076+10,7616.22UUGGACUUGAGAUUUGGUGAGAnearMIRNAShortStack
osa-b1.0r1-125767Oryza sativa (Rice) 1.07:26707150-26707297+3,0981.79AAUGCUAGAAGACUUACAUUGUGAnearMIRNAShortStack
osa-b1.0r1-127594Oryza sativa (Rice) 1.08:1709545-1709629+3700.21AUGAAUAUGGGAAAUACUAGAAUGnearMIRNAShortStack
osa-b1.0r1-127913Oryza sativa (Rice) 1.08:2577313-2577369-2260.13AAUGAGUGAAUGAGUGAAUGAGCnearMIRNAShortStack
osa-MIR5796Oryza sativa (Rice) 1.08:2672521-2672691-9,4605.47UCAUUCAGGAUUGAAGCCGCCmiR5796nearMIRNAmiRBase21
osa-b1.0r1-128490Oryza sativa (Rice) 1.08:3982102-3982122-670.04UAUGAUAAUGGAGACACUAAAnearMIRNAShortStack
osa-MIR1862bOryza sativa (Rice) 1.08:8341200-8341398-86,41749.92ACGAGGUUGGUUUAUUUUGGGACGmiR1862nearMIRNAmiRBase21
osa-b1.0r1-130596Oryza sativa (Rice) 1.08:9618643-9618758+2150.12AUAGAAAAUGAACUAGCAAGUAGGnearMIRNAShortStack
osa-b1.0r1-130606Oryza sativa (Rice) 1.08:9645170-9645285-8380.48AGUUAUAAGACUUUCUGGCAUnearMIRNAShortStack
osa-b1.0r1-131224Oryza sativa (Rice) 1.08:11326970-11327151-4700.27GAUGUCGGACGCAUACGCCGUGGCnearMIRNAShortStack
osa-b1.0r1-131611Oryza sativa (Rice) 1.08:12651948-12652016-3,0881.78AAAAUGCAUGGAGAAUUAUGGUGUnearMIRNAShortStack
osa-MIR1861jOryza sativa (Rice) 1.08:15132727-15132836-2,1021.21CGGUCUUGAGGCAGGAACUGAGmiR1861nearMIRNAmiRBase21
osa-MIR818fOryza sativa (Rice) 1.08:18746588-18746866-4,2382.45GGGAGCAUGUAGGAUGGCCAUmiR818nearMIRNAmiRBase21
osa-b1.0r1-134634Oryza sativa (Rice) 1.08:20895594-20895648+1,7461.01UGUCGUUUAGGACAAGAUUUGGUCnearMIRNAShortStack
osa-b1.0r1-134850Oryza sativa (Rice) 1.08:21349575-21349856+1,5380.89AACUUAUUUUUGAGAUCUGAACCUnearMIRNAShortStack
osa-b1.0r1-135993Oryza sativa (Rice) 1.08:23951673-23951811+5790.33GAGGCGGCGUCGGCGGCGGCGmiR11418nearMIRNAShortStack
osa-b1.0r1-136326Oryza sativa (Rice) 1.08:24639225-24639248+4470.26ACCCGGACUCGCCGUCGACGCnearMIRNAShortStack
osa-b1.0r1-139691Oryza sativa (Rice) 1.09:5342705-5342871+1,4830.86UAAUUGAAAUUAGAACGAUGUGAUnearMIRNAShortStack
osa-b1.0r1-140193Oryza sativa (Rice) 1.09:6640057-6640132-4600.27GAAUAUAGGAAAUGUUAGAAUGACnearMIRNAShortStack
21nt_phased_1073Oryza sativa (Rice) 1.09:6944792-6945024+2,5061.45CAUCCAAGAAUUCAGUCACAAnearMIRNAFei_et_al_2016
osa-b1.0r1-142277Oryza sativa (Rice) 1.09:11815308-11815490-1,4200.82AAAUAUAGGAAAUGUUAGAAUGACnearMIRNAShortStack
osa-b1.0r1-142336Oryza sativa (Rice) 1.09:11984028-11984132-7710.45AUGAAUAUGGGAAAUACUAGAAUGnearMIRNAShortStack
osa-b1.0r1-142558Oryza sativa (Rice) 1.09:12381278-12381401-1,5650.90GAAUGUGGAAAAUGUUAGAAUGGCnearMIRNAShortStack
osa-MIR1846eOryza sativa (Rice) 1.09:13211437-13211505-42,54724.58AACGAGGAGGCCGGGACCACCGGmiR1846nearMIRNAmiRBase21
osa-MIR1861mOryza sativa (Rice) 1.09:13532649-13532744+8780.51CGGUCUUGUGGCAAGAACUGAGmiR1861nearMIRNAmiRBase21
osa-MIR169dOryza sativa (Rice) 1.09:14620382-14620484-1870.11UAGCCAAGGAUGAAUUGCCGGmiR169nearMIRNAmiRBase21
osa-b1.0r1-143529Oryza sativa (Rice) 1.09:14620453-14620474-1850.11UAGCCAAGGAUGAAUUGCCGGmiR169nearMIRNAShortStack
osa-b1.0r1-145165Oryza sativa (Rice) 1.09:18289178-18289203-3,0611.77UGACAGAAGAGAGAGAGCACmiR156nearMIRNAShortStack
osa-b1.0r1-147080Oryza sativa (Rice) 1.0AP008247:61364-61387+2760.16UGAUCUUGAGGCAGAAACUGAGmiR1861nearMIRNAShortStack