Lunardon et al. 2020

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
SRR1197117	4,224,329	4,381,873	SRA	0	cotyledon	Williams 82	wt	A	1	cotyledon (7-days-old plants) -- darkness
SRR1296592	8,245,099	10,676,912	SRA	0	seed axis stele	Williams 82	wt	AA	1	seed axis stele (early maturation stage) -- control conditions
SRR1296593	9,432,223	9,470,697	SRA	0	seed axis stele	Williams 82	wt	AA	1	seed axis stele (early maturation stage) -- control conditions
SRR1296594	18,524,405	31,548,950	SRA	0	seed axis vasculature	Williams 82	wt	AB	1	seed axis vasculature (early maturation stage) -- control conditions
SRR1296595	6,479,778	7,727,933	SRA	0	seed axis vasculature	Williams 82	wt	AB	1	seed axis vasculature (early maturation stage) -- control conditions
SRR1296596	8,312,028	16,378,761	SRA	0	seed cotyledon abaxial epidermis	Williams 82	wt	AC	1	seed cotyledon abaxial epidermis (early maturation stage) -- control conditions
SRR1296597	8,838,131	18,173,855	SRA	0	seed cotyledon abaxial epidermis	Williams 82	wt	AC	1	seed cotyledon abaxial epidermis (early maturation stage) -- control conditions
SRR1296601	5,798,763	14,168,446	SRA	0	seed cotyledon adaxial epidermis	Williams 82	wt	AD	1	seed cotyledon adaxial epidermis (early maturation stage) -- control conditions
SRX551018	8,844,027	20,851,379	SRA	0	seed cotyledon adaxial epidermis	Williams 82	wt	AD	1	seed cotyledon adaxial epidermis (early maturation stage) -- control conditions
SRR1296602	5,791,722	13,137,364	SRA	0	seed cotyledon adaxial parenchyma	Williams 82	wt	AE	1	seed cotyledon adaxial parenchyma (early maturation stage) -- control conditions
SRR1296603	7,803,752	15,789,877	SRA	0	seed cotyledon adaxial parenchyma	Williams 82	wt	AE	1	seed cotyledon adaxial parenchyma (early maturation stage) -- control conditions
SRR1296605	7,011,860	13,582,418	SRA	0	seed cotyledon vasculature	Williams 82	wt	AF	1	seed cotyledon vasculature (early maturation stage) -- control conditions
SRX551022	14,877,487	36,043,451	SRA	0	seed cotyledon vasculature	Williams 82	wt	AF	1	seed cotyledon vasculature (early maturation stage) -- control conditions
SRR1296607	14,791,530	35,677,959	SRA	0	endosperm	Williams 82	wt	AG	1	endosperm (early maturation stage) -- control conditions
SRX551024	10,670,913	39,709,499	SRA	0	endosperm	Williams 82	wt	AG	1	endosperm (early maturation stage) -- control conditions
SRR1296610	16,605,515	17,144,874	SRA	0	seed coat hilum	Williams 82	wt	AH	1	seed coat hilum (early maturation stage) -- control conditions
SRR1296611	15,767,677	27,423,299	SRA	0	seed coat hilum	Williams 82	wt	AH	1	seed coat hilum (early maturation stage) -- control conditions
SRR1296612	9,805,257	18,620,690	SRA	0	seed coat palisade	Williams 82	wt	AI	1	seed coat palisade (early maturation stage) -- control conditions
SRR1296613	12,976,358	10,633,885	SRA	0	seed coat palisade	Williams 82	wt	AI	1	seed coat palisade (early maturation stage) -- control conditions
SRR1296614	4,358,074	7,088,787	SRA	0	seed coat parenchyma	Williams 82	wt	AJ	1	seed coat parenchyma (early maturation stage) -- control conditions
SRR1296615	8,117,908	10,219,097	SRA	0	seed coat parenchyma	Williams 82	wt	AJ	1	seed coat parenchyma (early maturation stage) -- control conditions
SRR1451604	9,829,942	33,043,650	SRA	0	anther	Williams 82	wt	AK	1	anther (from unopened flowers) -- control conditions
SRR1451605	17,775,412	24,229,776	SRA	0	anther	Williams 82	wt	AK	1	anther (from unopened flowers) -- control conditions
SRR1451606	7,489,354	18,259,086	SRA	0	ovary	Williams 82	wt	AL	1	ovary (from unopened flowers) -- control conditions
SRR1451607	23,688,420	28,662,562	SRA	0	ovary	Williams 82	wt	AL	1	ovary (from unopened flowers) -- control conditions
SRR1451608	8,160,810	33,306,177	SRA	0	flower	Williams 82	wt	AM	1	unopened flower -- control conditions
SRR1451609	27,140,013	21,019,994	SRA	0	flower	Williams 82	wt	AM	1	unopened flower -- control conditions
SRR1451610	17,287,308	43,169,473	SRA	0	flower	Williams 82	wt	AN	1	open flower for 1 day -- control conditions
SRR1451611	22,059,708	26,783,507	SRA	0	flower	Williams 82	wt	AN	1	open flower for 1 day -- control conditions
SRR1451624	21,260,887	7,257,951	SRA	0	leaf	Williams 82	wt	AO	1	leaf (V1 stage) -- treated with water for 30 min -- control
SRR1451625	14,450,743	5,562,179	SRA	0	leaf	Williams 82	wt	AO	1	leaf (V1 stage) -- treated with water for 30 min -- control
SRR1451626	21,353,659	9,330,223	SRA	0	leaf	Williams 82	wt	AP	1	leaf (V1 stage) -- treated with chitin octamer for 30 min
SRR1451627	14,451,695	5,473,358	SRA	0	leaf	Williams 82	wt	AP	1	leaf (V1 stage) -- treated with chitin octamer for 30 min
SRR1451636	24,140,611	9,404,723	SRA	0	leaf	Williams 82	wt	AQ	1	leaf (V1 stage) -- treated with water for 30 min -- control
SRR1451637	15,732,179	4,416,206	SRA	0	leaf	Williams 82	wt	AQ	1	leaf (V1 stage) -- treated with water for 30 min -- control
SRR1451638	20,972,042	8,541,043	SRA	0	leaf	Williams 82	wt	AR	1	leaf (V1 stage) -- treated with a conserved 22-amino acid peptide from bacterial flagellin 22 for 30 min
SRR1451639	17,931,977	5,019,872	SRA	0	leaf	Williams 82	wt	AR	1	leaf (V1 stage) -- treated with a conserved 22-amino acid peptide from bacterial flagellin 22 for 30 min
SRR2040133	7,344,552	19,226,529	SRA	0	embryo proper	Williams 82	wt	AS	1	embryo proper (globular stage) -- control conditions
SRR2040134	7,540,440	19,777,716	SRA	0	embryo proper	Williams 82	wt	AS	1	embryo proper (globular stage) -- control conditions
SRR2040167	12,093,273	28,470,940	SRA	0	seed coat hilum	Williams 82	wt	AT	1	seed coat hilum (heart stage) -- control conditions
SRX1038545	9,967,836	21,928,520	SRA	0	seed coat hilum	Williams 82	wt	AT	1	seed coat hilum (heart stage) -- control conditions
SRR2340571	3,099,242	2,649,114	SRA	0	stem	Williams 82	wt	AU	1	stem (trefoil stage) -- control conditions
SRR2340572	2,551,611	1,676,697	SRA	0	leaf	Williams 82	wt	AV	1	old leaf (trefoil stage) -- control conditions
SRR2340573	2,251,266	2,384,448	SRA	0	leaf	Williams 82	wt	AW	1	new leaf (trefoil stage) -- control conditions
SRR2340574	2,822,449	1,994,390	SRA	0	cotyledon	Williams 82	wt	AX	1	old cotyledon (trefoil stage) -- control conditions
SRR2340575	3,168,116	2,104,717	SRA	0	leaf	Williams 82	wt	AY	1	old leaf (stage of flower bud differentiation) -- control conditions
SRR2340576	4,225,640	2,482,717	SRA	0	leaf	Williams 82	wt	AZ	1	new leaf (stage of flower bud differentiation) -- control conditions
SRR1197118	4,261,517	3,231,243	SRA	0	hypocotyl	Williams 82	wt	B	1	hypocotyl (7-days-old plants) -- darkness
SRR2340577	2,394,455	1,340,879	SRA	0	leaf	Williams 82	wt	BA	1	leaf bud (stage of flower bud differentiation) -- control conditions
SRR2340578	3,410,792	1,903,953	SRA	0	flower	Williams 82	wt	BB	1	flower bud (stage of flower bud differentiation) -- control conditions
SRR2340579	2,569,767	1,957,863	SRA	0	seed	Williams 82	wt	BC	1	developing seed (around 10-weeks-old plants) -- control conditions
SRR2340581	2,849,097	1,394,999	SRA	0	seed	Williams 82	wt	BD	1	developing seed (around 8-weeks-old plants) -- control conditions
SRR2340582	3,825,870	1,782,381	SRA	0	seed	Williams 82	wt	BE	1	developing seed (around 6-weeks-old plants) -- control conditions
SRR2340583	2,722,706	2,192,132	SRA	0	fruit	Williams 82	wt	BF	1	pod (of 3 weeks) -- control conditions
SRR2340584	3,404,014	2,305,882	SRA	0	fruit	Williams 82	wt	BG	1	pod (of 2 weeks) -- control conditions
SRR2340585	3,585,865	2,420,158	SRA	0	fruit	Williams 82	wt	BH	1	pod (of 1 week) -- control conditions
SRR2340586	3,328,931	2,664,803	SRA	0	stem	Williams 82	wt	BI	1	stem (stage of germination) -- control conditions
SRR2340588	4,057,467	2,803,354	SRA	0	cotyledon	Williams 82	wt	BJ	1	cotyledon (stage of germination) -- control conditions
SRR2340589	2,219,589	3,579,026	SRA	0	leaf	Williams 82	wt	BK	1	new leaf (stage of germination) -- control conditions
SRR2340590	3,398,582	1,951,040	SRA	0	flower	Williams 82	wt	BL	1	flower bud (before flowering ) -- control conditions
SRR2340591	2,493,110	1,672,339	SRA	0	flower	Williams 82	wt	BM	1	flower (stage of florescence) -- control conditions
SRR2340592	2,556,097	1,522,192	SRA	0	flower	Williams 82	wt	BN	1	old flower -- control conditions
SRR2340593	3,172,678	2,315,376	SRA	0	flower	Williams 82	wt	BO	1	flower (5 days after flowering) -- control conditions
SRR3090714	4,036,610	1,716,874	SRA	0	leaf	Williams 82	wt	BP	1	leaf (10-days-old plants mock-inoculated for 14 days) -- control conditions
SRR3090715	4,299,531	2,332,568	SRA	0	leaf	Williams 82	wt	BQ	1	leaf (10-days-old plants inoculated for 14 days with Soybean mosaic virus-L ) -- SMV-L-infected
SRR3090716	3,444,099	1,890,392	SRA	0	leaf	Williams 82	wt	BR	1	leaf (10-days-old plants inoculated for 14 days with Soybean mosaic virus-LRB) -- SMV-LRB-infected
SRR3090717	3,407,559	2,919,793	SRA	0	leaf	Williams 82	wt	BS	1	leaf (10-days-old plants inoculated for 14 days with Soybean mosaic virus-G7) -- SMV-G7-infected
SRR955300	20,458,419	23,430,340	SRA	0	seed coat	Williams 82	wt	BT	1	seed coat (early maturation stage) -- control conditions
SRR955301	24,017,383	23,395,771	SRA	0	seed cotyledon	Williams 82	wt	BU	1	seed cotyledon (early maturation stage) -- control conditions
SRR955302	22,065,914	25,193,266	SRA	0	seed axis	Williams 82	wt	BV	1	seed axis (early maturation stage) -- control conditions
SRX1038514	7,729,276	16,963,791	SRA	0	seed coat epidermis	Williams 82	wt	BW	1	seed coat epidermis (globular stage) -- control conditions
SRX1038515	7,235,841	15,881,049	SRA	0	seed coat epidermis	Williams 82	wt	BW	1	seed coat epidermis (globular stage) -- control conditions
SRX547542	7,209,473	18,178,265	SRA	0	endosperm	Williams 82	wt	BX	1	endosperm (globular stage) -- control conditions
SRX547543	3,934,882	20,203,843	SRA	0	endosperm	Williams 82	wt	BX	1	endosperm (globular stage) -- control conditions
SRX549088	8,717,396	28,443,253	SRA	0	seed endothelium	Williams 82	wt	BY	1	seed endothelium (heart stage) -- control conditions
SRX549089	10,607,561	39,308,263	SRA	0	seed endothelium	Williams 82	wt	BY	1	seed endothelium (heart stage) -- control conditions
SRX549094	7,375,642	25,229,990	SRA	0	seed coat epidermis	Williams 82	wt	BZ	1	seed coat epidermis (heart stage) -- control conditions
SRX549095	7,260,721	26,896,933	SRA	0	seed coat epidermis	Williams 82	wt	BZ	1	seed coat epidermis (heart stage) -- control conditions
SRR1197119	8,877,236	3,820,744	SRA	0	apical hook concave	Williams 82	wt	C	1	apical hook concave (7-days-old plants) -- darkness
SRX549100	8,191,746	32,651,575	SRA	0	seed suspensor	Williams 82	wt	CA	1	seed suspensor (heart stage) -- control conditions
SRX549101	6,880,071	25,758,599	SRA	0	seed suspensor	Williams 82	wt	CA	1	seed suspensor (heart stage) -- control conditions
SRX550099	9,360,678	37,570,956	SRA	0	endosperm	Williams 82	wt	CB	1	endosperm (cotyledon stage) -- control conditions
SRX550100	7,950,525	40,924,614	SRA	0	endosperm	Williams 82	wt	CB	1	endosperm (cotyledon stage) -- control conditions
SRX550105	13,499,339	51,592,098	SRA	0	seed coat inner integument	Williams 82	wt	CC	1	seed coat inner integument (cotyledon stage) -- control conditions
SRX550106	11,081,905	31,049,602	SRA	0	seed coat inner integument	Williams 82	wt	CC	1	seed coat inner integument (cotyledon stage) -- control conditions
SRX551016	7,174,628	13,726,185	SRA	0	seed cotyledon abaxial parenchyma	Williams 82	wt	CD	1	seed cotyledon abaxial parenchyma (early maturation stage) -- control conditions
SRX551017	7,710,413	13,550,571	SRA	0	seed cotyledon abaxial parenchyma	Williams 82	wt	CD	1	seed cotyledon abaxial parenchyma (early maturation stage) -- control conditions
SRX551026	6,478,191	19,839,724	SRA	0	seed coat hourglass	Williams 82	wt	CE	1	seed coat hourglass (early maturation stage) -- control conditions
SRX551027	6,562,236	19,875,428	SRA	0	seed coat hourglass	Williams 82	wt	CE	1	seed coat hourglass (early maturation stage) -- control conditions
SRR1451650	14,278,718	27,997,754	SRA	0	nodule	unknown	wt	CF	1	nodule -- 10 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451651	9,930,073	29,491,558	SRA	0	nodule	unknown	wt	CF	1	nodule -- 10 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451652	14,156,341	24,224,330	SRA	0	nodule	unknown	wt	CF	1	nodule -- 10 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451653	15,642,784	29,707,850	SRA	0	nodule	unknown	wt	CG	1	nodule -- 15 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451654	16,068,910	25,386,516	SRA	0	nodule	unknown	wt	CG	1	nodule -- 15 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451655	16,539,630	17,753,900	SRA	0	nodule	unknown	wt	CG	1	nodule -- 15 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451656	13,743,710	31,078,789	SRA	0	nodule	unknown	wt	CH	1	nodule -- 20 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451657	10,959,832	19,353,191	SRA	0	nodule	unknown	wt	CH	1	nodule -- 20 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451658	13,909,663	18,335,258	SRA	0	nodule	unknown	wt	CH	1	nodule -- 20 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451659	12,823,890	25,013,428	SRA	0	nodule	unknown	wt	CI	1	nodule -- 25 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451660	15,725,697	21,794,610	SRA	0	nodule	unknown	wt	CI	1	nodule -- 25 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451661	11,757,374	14,770,612	SRA	0	nodule	unknown	wt	CI	1	nodule -- 25 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451662	12,767,640	20,249,704	SRA	0	nodule	unknown	wt	CJ	1	nodule -- 30 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451663	12,648,891	23,341,505	SRA	0	nodule	unknown	wt	CJ	1	nodule -- 30 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR1451664	12,493,142	23,935,519	SRA	0	nodule	unknown	wt	CJ	1	nodule -- 30 days post-inoculation with Bradyrhizobium japonicum strain USDA110
SRR835758	8,481,858	11,179,548	SRA	0	root	116	wt	CK	1	root (10-days-old plants) -- mix of short-term low nitrogen stress: 0.5 h -- 2 h -- 6 h --12 h
SRR835759	9,820,772	10,964,073	SRA	0	root	116	wt	CL	1	root (10-days-old plants) -- mix of short-term control conditions: 0.5 h -- 2 h -- 6 h --12 h
SRR835760	11,108,469	12,838,000	SRA	0	root	116	wt	CM	1	root (10-days-old plants) -- mix of long-term low nitrogen stress: 3d -- 6d -- 9d -- 12d
SRR835761	10,399,025	10,403,479	SRA	0	root	116	wt	CN	1	root (10-days-old plants) -- mix of long-term control conditions: 3d -- 6d -- 9d -- 12d
SRR835762	11,766,781	10,299,665	SRA	0	root	84-70	wt	CO	1	root (10-days-old plants) -- mix of short-term low nitrogen stress: 0.5 h -- 2 h -- 6 h --12 h
SRR835763	10,572,881	9,992,157	SRA	0	root	84-70	wt	CP	1	root (10-days-old plants) -- mix of short-term control conditions: 0.5 h -- 2 h -- 6 h --12 h
SRR835764	11,959,871	10,296,116	SRA	0	root	84-70	wt	CQ	1	root (10-days-old plants) -- mix of long-term low nitrogen stress: 3d -- 6d -- 9d -- 12d
SRR835765	13,886,775	10,291,811	SRA	0	root	84-70	wt	CR	1	root (10-days-old plants) -- mix of long-term control conditions: 3d -- 6d -- 9d -- 12d
SRR835766	19,258,688	3,234,157	SRA	0	shoot	116	wt	CS	1	shoot (10-days-old plants) -- mix of short-term low nitrogen stress: 0.5 h -- 2 h -- 6 h --12 h
SRR835767	18,670,519	3,797,801	SRA	0	shoot	116	wt	CT	1	shoot (10-days-old plants) -- mix of short-term control conditions: 0.5 h -- 2 h -- 6 h --12 h
SRR835768	20,438,897	1,401,310	SRA	0	shoot	116	wt	CU	1	shoot (10-days-old plants) -- mix of long-term low nitrogen stress: 3d -- 6d -- 9d -- 12d
SRR835769	20,780,602	2,547,480	SRA	0	shoot	84-70	wt	CV	1	shoot (10-days-old plants) -- mix of short-term low nitrogen stress: 0.5 h -- 2 h -- 6 h --12 h
SRR835770	19,549,111	1,226,484	SRA	0	shoot	116	wt	CW	1	shoot (10-days-old plants) -- mix of long-term control conditions: 3d -- 6d -- 9d -- 12d
SRR835771	19,799,632	3,632,956	SRA	0	shoot	84-70	wt	CX	1	shoot (10-days-old plants) -- mix of short-term control conditions: 0.5 h -- 2 h -- 6 h --12 h
SRR835772	19,503,382	1,677,141	SRA	0	shoot	84-70	wt	CY	1	shoot (10-days-old plants) -- mix of long-term low nitrogen stress: 3d -- 6d -- 9d -- 12d
SRR835773	18,748,435	1,023,024	SRA	0	shoot	84-70	wt	CZ	1	shoot (10-days-old plants) -- mix of long-term control conditions: 3d -- 6d -- 9d -- 12d
SRR1197120	6,715,656	2,667,629	SRA	0	apical hook convex	Williams 82	wt	D	1	apical hook convex (7-days-old plants) -- darkness
SRR1197121	2,270,669	2,300,365	SRA	0	cotyledon	Williams 82	wt	E	1	cotyledon (7-days-old plants) -- far-red light
SRR1197122	6,420,054	4,602,550	SRA	0	hypocotyl	Williams 82	wt	F	1	hypocotyl (7-days-old plants) -- far-red light
SRR1197123	6,013,136	4,283,340	SRA	0	apical hook concave	Williams 82	wt	G	1	apical hook concave (7-days-old plants) -- far-red light
SRR1197124	6,044,825	3,190,689	SRA	0	apical hook convex	Williams 82	wt	H	1	apical hook convex (7-days-old plants) -- far-red light
SRR1292924	11,098,377	25,317,701	SRA	0	seed coat hilum	Williams 82	wt	I	1	seed coat hilum (globular stage) -- control conditions
SRR1292925	7,195,374	16,938,105	SRA	0	seed coat hilum	Williams 82	wt	I	1	seed coat hilum (globular stage) -- control conditions
SRR1292926	9,716,219	21,690,746	SRA	0	seed coat inner integument	Williams 82	wt	J	1	seed coat inner integument (globular stage) -- control conditions
SRX547547	9,768,956	29,365,445	SRA	0	seed coat inner integument	Williams 82	wt	J	1	seed coat inner integument (globular stage) -- control conditions
SRR1292928	12,151,024	18,942,500	SRA	0	seed coat outer integument	Williams 82	wt	K	1	seed coat outer integument (globular stage) -- control conditions
SRR1292929	8,308,077	12,951,923	SRA	0	seed coat outer integument	Williams 82	wt	K	1	seed coat outer integument (globular stage) -- control conditions
SRR1294476	9,773,509	17,835,318	SRA	0	embryo proper	Williams 82	wt	L	1	embryo proper (heart stage) -- control conditions
SRR1294477	6,539,547	11,669,047	SRA	0	embryo proper	Williams 82	wt	L	1	embryo proper (heart stage) -- control conditions
SRR1294478	5,710,363	20,369,863	SRA	0	endosperm	Williams 82	wt	M	1	endosperm (heart stage) -- control conditions
SRR1294479	6,227,265	16,049,484	SRA	0	endosperm	Williams 82	wt	M	1	endosperm (heart stage) -- control conditions
SRR1294483	6,791,348	21,060,291	SRA	0	seed coat inner integument	Williams 82	wt	N	1	seed coat inner integument (heart stage) -- control conditions
SRX549096	7,366,576	22,153,281	SRA	0	seed coat inner integument	Williams 82	wt	N	1	seed coat inner integument (heart stage) -- control conditions
SRR1294484	6,548,746	20,046,186	SRA	0	seed coat outer integument	Williams 82	wt	O	1	seed coat outer integument (heart stage) -- control conditions
SRR1294485	9,340,910	21,629,445	SRA	0	seed coat outer integument	Williams 82	wt	O	1	seed coat outer integument (heart stage) -- control conditions
SRR1295517	11,634,308	34,360,696	SRA	0	embryo proper	Williams 82	wt	P	1	embryo proper (cotyledon stage) -- control conditions
SRX550093	9,063,840	22,078,598	SRA	0	embryo proper	Williams 82	wt	P	1	embryo proper (cotyledon stage) -- control conditions
SRR1295519	8,668,596	8,289,956	SRA	0	embryo proper axis	Williams 82	wt	Q	1	embryo proper axis (cotyledon stage) -- control conditions
SRX550095	3,645,292	3,077,810	SRA	0	embryo proper axis	Williams 82	wt	Q	1	embryo proper axis (cotyledon stage) -- control conditions
SRR1295520	6,086,371	7,411,250	SRA	0	embryo proper cotyledon	Williams 82	wt	R	1	embryo proper cotyledon (cotyledon stage) -- control conditions
SRR1295521	7,192,253	14,405,632	SRA	0	embryo proper cotyledon	Williams 82	wt	R	1	embryo proper cotyledon (cotyledon stage) -- control conditions
SRR1295524	25,167,693	23,339,931	SRA	0	seed coat epidermis	Williams 82	wt	S	1	seed coat epidermis (cotyledon stage) -- control conditions
SRR1295525	20,089,111	11,224,190	SRA	0	seed coat epidermis	Williams 82	wt	S	1	seed coat epidermis (cotyledon stage) -- control conditions
SRR1295526	8,474,407	18,301,718	SRA	0	seed coat hilum	Williams 82	wt	T	1	seed coat hilum (cotyledon stage) -- control conditions
SRR1295527	4,684,922	5,348,839	SRA	0	seed coat hilum	Williams 82	wt	T	1	seed coat hilum (cotyledon stage) -- control conditions
SRR1295530	7,267,717	17,332,786	SRA	0	seed coat outer integument	Williams 82	wt	U	1	seed coat outer integument (cotyledon stage) -- control conditions
SRR1295531	12,212,587	18,194,059	SRA	0	seed coat outer integument	Williams 82	wt	U	1	seed coat outer integument (cotyledon stage) -- control conditions
SRR1296582	6,761,954	7,201,370	SRA	0	seed axis epidermis	Williams 82	wt	V	1	seed axis epidermis (early maturation stage) -- control conditions
SRR1296583	6,122,298	8,896,790	SRA	0	seed axis epidermis	Williams 82	wt	V	1	seed axis epidermis (early maturation stage) -- control conditions
SRR1296584	11,544,855	9,437,177	SRA	0	seed axis plumule	Williams 82	wt	W	1	seed axis plumule (early maturation stage) -- control conditions
SRR1296585	13,548,535	10,626,102	SRA	0	seed axis plumule	Williams 82	wt	W	1	seed axis plumule (early maturation stage) -- control conditions
SRR1296586	5,695,176	6,308,974	SRA	0	seed axis parenchyma	Williams 82	wt	X	1	seed axis parenchyma (early maturation stage) -- control conditions
SRX551005	5,485,628	5,699,300	SRA	0	seed axis parenchyma	Williams 82	wt	X	1	seed axis parenchyma (early maturation stage) -- control conditions
SRR1296589	9,962,386	9,981,074	SRA	0	seed axis root tip	Williams 82	wt	Y	1	seed axis root tip (early maturation stage) -- control conditions
SRX551006	9,787,181	40,257,202	SRA	0	seed axis root tip	Williams 82	wt	Y	1	seed axis root tip (early maturation stage) -- control conditions
SRR1296590	11,109,860	17,629,007	SRA	0	seed axis shoot apical meristem	Williams 82	wt	Z	1	seed axis shoot apical meristem (early maturation stage) -- control conditions
SRR1296591	14,001,488	22,648,456	SRA	0	seed axis shoot apical meristem	Williams 82	wt	Z	1	seed axis shoot apical meristem (early maturation stage) -- control conditions

	Arikit_et_al_2014	miRBase21-uniq	ShortStack
MIRNA	0	270	215
nearMIRNA	0	25	102
siRNA20	0	1	70
siRNA21	6	55	2,378
siRNA22	0	31	2,429
siRNA23	0	3	107
siRNA24	0	163	55,061
OtherRNA	0	28	12,196
NotExpressed	0	21	0

Data from Lunardon et al. (2020)

Genome and annotations summary

Glycine max (Soybean) genome build 1.0 (gma-b1.0)

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Download genome assembly FASTA file

BLAST search

Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (161)