het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Glycine max (Soybean) genome build 1.0 (gma-b1.0)

Version v1.0 of Glycine max Merrill cv. Williams 82 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
gma-b1.0r1-355Glycine max (Soybean) 1.01:3340338-3341240-2,267,306556.17GGUAGUUUGAUCGUGGAAUUsiRNA20ShortStack
gma-b1.0r1-956Glycine max (Soybean) 1.01:9052006-9052211+1,4210.35UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
gma-b1.0r1-1147Glycine max (Soybean) 1.01:14804612-14805331-17,8014.37AGGCCCUCCUUCUAGCGCCAmiR3711siRNA20ShortStack
gma-b1.0r1-1179Glycine max (Soybean) 1.01:17221218-17221237-3,0910.76GGUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack
gma-b1.0r1-2004Glycine max (Soybean) 1.01:38825910-38825931-2090.05UGUUGUUUUACCUAUUCUUUsiRNA20ShortStack
gma-b1.0r1-2079Glycine max (Soybean) 1.01:39856903-39856925+8730.21UCUCCCCAGUGGAGUCGCCAsiRNA20ShortStack
gma-b1.0r1-2154Glycine max (Soybean) 1.01:41873595-41873659+15,9393.91AGGCCCUCCUUCUAGCGCCAmiR3711siRNA20ShortStack
gma-b1.0r1-2902Glycine max (Soybean) 1.01:49794808-49794829+3900.10AGUUACUAAUUCAUGAUGACsiRNA20ShortStack
gma-b1.0r1-3203Glycine max (Soybean) 1.01:52185305-52185328-1600.04UUGUUUGACGGAAUAUGUAGsiRNA20ShortStack
gma-b1.0r1-5532Glycine max (Soybean) 1.010:36293136-36293355-15,4373.79GUUCCCCACAGUCGGCGCCAsiRNA20ShortStack
gma-b1.0r1-9551Glycine max (Soybean) 1.011:32901967-32902327+177,44043.53UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
gma-b1.0r1-10278Glycine max (Soybean) 1.012:1070295-1070327+4530.11UUCAAUUUGAUCCUGCCAUCsiRNA20ShortStack
gma-b1.0r1-10279Glycine max (Soybean) 1.012:1070463-1070513+1,2920.32CAGUGGGAUCAAAUUGAACUsiRNA20ShortStack
gma-b1.0r1-11669Glycine max (Soybean) 1.012:13993658-13993678+7210.18GGCGGAUGUCGCCAAGUGGAsiRNA20ShortStack
gma-b1.0r1-11724Glycine max (Soybean) 1.012:14980762-14980972+25,1286.16GAUCCCCACAGACGGCGCCAsiRNA20ShortStack
gma-b1.0r1-11889Glycine max (Soybean) 1.012:17909854-17910022-18,1094.44UCUCCCCGGCAACGGCGCCAsiRNA20ShortStack
gma-b1.0r1-13176Glycine max (Soybean) 1.012:38586662-38586682-5540.14UGACAGAAGAGAGGGAGCAUmiR156siRNA20ShortStack
gma-b1.0r1-17033Glycine max (Soybean) 1.013:36512794-36512814+4940.12UGACAGAAGAGAGGGAGCAUmiR156siRNA20ShortStack
gma-b1.0r1-17249Glycine max (Soybean) 1.013:38307864-38307886+4,9161.21UUGACAGAAGAGAGAGAGCAAmiR156siRNA20ShortStack
gma-b1.0r1-18243Glycine max (Soybean) 1.014:3157772-3157791+6910.17GAAUGAUUGACAGACUGAGAsiRNA20ShortStack
gma-b1.0r1-18649Glycine max (Soybean) 1.014:6222115-6222192.6910.17CUUAUUUCAUUAAUCAAGGCsiRNA20ShortStack
gma-b1.0r1-21564Glycine max (Soybean) 1.015:440655-440820+1,9290.47UUGAUACACUAGUAUGGAUUsiRNA20ShortStack
gma-b1.0r1-21671Glycine max (Soybean) 1.015:1389422-1389526+3,7690.93GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
gma-b1.0r1-22471Glycine max (Soybean) 1.015:8870741-8870762+2350.06GAUGCUAACUCUUUGUGUAGsiRNA20ShortStack
gma-b1.0r1-23242Glycine max (Soybean) 1.015:14684811-14684830-1900.05UUCCACAGCUUUUUGAACUUsiRNA20ShortStack
gma-b1.0r1-23788Glycine max (Soybean) 1.015:21486619-21486640-2,4660.61GGUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack
gma-b1.0r1-25951Glycine max (Soybean) 1.016:5235174-5235200+3550.09UUAUGGGAGUGUAGAGGUAAsiRNA20ShortStack
gma-b1.0r1-27111Glycine max (Soybean) 1.016:26685627-26685662+2250.06AUUAGGCUCUGAUACCAUGGsiRNA20ShortStack
gma-b1.0r1-28439Glycine max (Soybean) 1.017:332296-332421.3600.09AUGCAAUUUUCACCAUUAAAsiRNA20ShortStack
gma-b1.0r1-29014Glycine max (Soybean) 1.017:6528202-6528253+3620.09UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
gma-b1.0r1-29170Glycine max (Soybean) 1.017:8033537-8033557-830.02UCAACUAUUCAGUCAACAAAsiRNA20ShortStack
gma-b1.0r1-29191Glycine max (Soybean) 1.017:8248279-8248302+1790.04UAUUAUGAUCUUGUGUGUAGsiRNA20ShortStack
gma-MIR4363-1Glycine max (Soybean) 1.017:19536435-19536549.30.00ACAGGCCUAAUAAGCCUUCUGGUAsiRNA20miRBase21-uniq
gma-b1.0r1-30562Glycine max (Soybean) 1.017:28519378-28519462-8910.22CGAAACCUGCUCUGAUACCAsiRNA20ShortStack
gma-b1.0r1-32502Glycine max (Soybean) 1.018:6646349-6646369+1,2990.32AAAAAAAAGAGAUGGGAAUUsiRNA20ShortStack
gma-b1.0r1-34663Glycine max (Soybean) 1.018:51137556-51138525-19,0004.66AACCAGGCUCUGAUACCAUUmiR1511siRNA20ShortStack
gma-b1.0r1-36142Glycine max (Soybean) 1.019:1075450-1075478+3000.07ACUUUUGGAUUUUGAUGCAGsiRNA20ShortStack
gma-b1.0r1-36917Glycine max (Soybean) 1.019:8424597-8425040-6610.16UUUGAAAGUUGGUGGUAACCsiRNA20ShortStack
gma-b1.0r1-37393Glycine max (Soybean) 1.019:28821860-28821960-18,1044.44CUGACAGAAGAUAGAGAGCACmiR156siRNA20ShortStack
gma-b1.0r1-39121Glycine max (Soybean) 1.019:45426017-45426144+4,483,1241,099.71GGUAGUUUGAUCGUGGAAUUsiRNA20ShortStack
gma-b1.0r1-39213Glycine max (Soybean) 1.019:46341168-46341195-9720.24AUUACUUAUGGAUUUUGCAGsiRNA20ShortStack
gma-b1.0r1-41039Glycine max (Soybean) 1.02:11345429-11345449+8170.20UGAGGUAGUAGGUUGUAUUGmiR7siRNA20ShortStack
gma-b1.0r1-41100Glycine max (Soybean) 1.02:11671582-11671830+3,8950.96UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
gma-b1.0r1-44158Glycine max (Soybean) 1.020:4747481-4747503-1,2230.30AAAACUGAUUGUGAGGCAUCsiRNA20ShortStack
gma-b1.0r1-44804Glycine max (Soybean) 1.020:25389619-25389685+6,0881.49GGUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack
gma-b1.0r1-45518Glycine max (Soybean) 1.020:35556839-35557072+3,5870.88UCUGGAAGAUGUAUUUGCUGsiRNA20ShortStack
gma-b1.0r1-45533Glycine max (Soybean) 1.020:35662859-35663181+201,25949.37UUGGACUGAAGGGGCCUCUUmiR319siRNA20ShortStack
gma-b1.0r1-46167Glycine max (Soybean) 1.020:41246934-41246955-6590.16ACCUGGUGGUUCUGGCGGGGsiRNA20ShortStack
gma-b1.0r1-48286Glycine max (Soybean) 1.03:28037293-28037398+21,2145.20GAUCCCCACAGACGGCGCCAsiRNA20ShortStack
gma-b1.0r1-49852Glycine max (Soybean) 1.03:43888029-43888059-2,0130.49AUUACUUAUGGAUGCUGCAGsiRNA20ShortStack
gma-b1.0r1-53568Glycine max (Soybean) 1.05:19986-20045-8190.20UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
gma-b1.0r1-53598Glycine max (Soybean) 1.05:355025-355099+5920.15GAGGUUGUGGUAGAGUGGUUsiRNA20ShortStack
gma-b1.0r1-53832Glycine max (Soybean) 1.05:2359412-2359431-1380.03AUUACUAUUAAUGAUCAAUCsiRNA20ShortStack
gma-b1.0r1-54819Glycine max (Soybean) 1.05:17955548-17955567-1260.03UCAUUUGCGUGCAAUGAUCUsiRNA20ShortStack
gma-b1.0r1-55911Glycine max (Soybean) 1.05:35076613-35076632-1240.03UCUCAUGGAGAUUGAUUCGUsiRNA20ShortStack
gma-b1.0r1-56535Glycine max (Soybean) 1.05:41363542-41363579-9150.22CGUGGAAUAUCUGAAACUGCsiRNA20ShortStack
gma-b1.0r1-56555Glycine max (Soybean) 1.05:41566315-41566362+3290.08UGACAGAAGAGAGAGAGCACmiR156siRNA20ShortStack
gma-b1.0r1-57003Glycine max (Soybean) 1.06:4013438-4013782+784,201192.36UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
gma-b1.0r1-58844Glycine max (Soybean) 1.06:22515767-22515884+3,9610.97UUCCACAGCUUCUUGAACUUsiRNA20ShortStack
gma-b1.0r1-58909Glycine max (Soybean) 1.06:27180851-27180894.7240.18UGUGUUUCAGGUCGCCCCUGsiRNA20ShortStack
gma-b1.0r1-60782Glycine max (Soybean) 1.07:2330013-2330033+1,7740.44GGUAGUUUCAUCGUGGAAUUsiRNA20ShortStack
gma-b1.0r1-62967Glycine max (Soybean) 1.07:28437147-28437408+23,2465.70AGGCCCUCCUUCUAGCGCCAmiR3711siRNA20ShortStack
gma-b1.0r1-63058Glycine max (Soybean) 1.07:32927202-32927221+2720.07GAUCCCCAGCGGAGUCGCCAsiRNA20ShortStack
gma-b1.0r1-63188Glycine max (Soybean) 1.07:35359924-35360030-5030.12GAAACCUGGCUCUGAUACCAmiR5139siRNA20ShortStack
gma-b1.0r1-64285Glycine max (Soybean) 1.07:44641632-44641767-1,8290.45GGUAGUUUGAUCCUGGAAUUsiRNA20ShortStack
gma-b1.0r1-65617Glycine max (Soybean) 1.08:12830350-12830369-740.02UUGUUCGAAAAACUGUUGUGsiRNA20ShortStack
gma-b1.0r1-66460Glycine max (Soybean) 1.08:18957885-18958185-757,867185.91GGUAGUUUGAUCGUGGAAUUsiRNA20ShortStack
gma-b1.0r1-68644Glycine max (Soybean) 1.09:1190317-1190336-6780.17UAACUGAACAUUCUUAGAUUsiRNA20ShortStack
gma-b1.0r1-69291Glycine max (Soybean) 1.09:6483220-6483334+7320.18UGAUUGAAAGAUGGAGGCCUsiRNA20ShortStack
gma-b1.0r1-69584Glycine max (Soybean) 1.09:9354084-9354103.2950.07GCUCUCUUUCCUCUGUCAUCsiRNA20ShortStack
gma-b1.0r1-71731Glycine max (Soybean) 1.09:41254394-41254413-5980.15GGUUGUUUGAUCGUGGAAUUsiRNA20ShortStack