Data from Lunardon et al. (2020)

Genome and annotations summary

Hordeum vulgare (Barley) genome build 1 (hvu-b1)

Version ASM32608v1 of Hordeum vulgare cv. Morex from Ensembl Plants

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BLAST search

Small RNA Loci

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	ShortStack	miRBase21-BestBlastHit
MIRNA	43	6
nearMIRNA	113	5
siRNA20	45	1
siRNA21	674	13
siRNA22	297	3
siRNA23	34	1
siRNA24	18,007	6
OtherRNA	10,210	32
NotExpressed	0	4

Small RNA-seq data

Reference Set

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
barley_all_reference_set	76,982,207	48,768,007	none	1	mixed	mixed	mixed	refset1	1	merge of 15 libraries - reference set 1

Invidiual alignments (15)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
GSM717573	1,959,418	884,090	GEO	0	leaf	unknown	wt	A	1	leaf (7-days-old plants) - control conditions
GSM717574	2,477,389	792,435	GEO	0	inflorescence	unknown	wt	B	1	inflorescence (pre-anthesis - green anthers but not dehisced) - control conditions
GSM717575	2,145,338	1,061,225	GEO	0	leaf	unknown	wt	C	1	leaf (7-days-old plants) - infected with Blumeria
SRR070296	3,812,024	631,600	SRA	0	leaf	Golden Promise	wt	D	1	leaf (3-weeks-old plants) - drought stress for 5 days
SRR070297	3,944,486	1,001,200	SRA	0	leaf	Golden Promise	wt	E	1	leaf (3-weeks-old plants) - control conditions
SRR070298	2,186,501	481,819	SRA	0	leaf	Golden Promise	with-TaDREB3	F	1	leaf (3-weeks-old plants) - control conditions
SRR2481851	6,278,260	5,559,961	SRA	0	seedling	Morex	wt	G	1	seedling (3-leaf stage) - control conditions after 27h
SRR2481852	8,563,530	9,048,770	SRA	0	seedling	Morex	wt	H	1	seedling (3-leaf stage) - salt stress after 27h
SRR2481853	9,866,921	6,885,361	SRA	0	seedling	Morex	wt	I	1	seedling (3-leaf stage) - control conditions after 3h
SRR2481854	8,328,583	7,412,164	SRA	0	seedling	Morex	wt	J	1	seedling (3-leaf stage) - salt stress after 3h
SRR2481855	8,243,886	5,809,479	SRA	0	seedling	Morex	wt	K	1	seedling (3-leaf stage) - control conditions after 8h
SRR2481856	6,526,000	5,657,154	SRA	0	seedling	Morex	wt	L	1	seedling (3-leaf stage) - salt stress after 8h
SRR513546	4,136,861	1,081,058	SRA	0	seed	Golden Promise	wt	M	1	immature grain (1-5 days post anthesis - from the middle six rows of the head) - control conditions
SRR513547	4,237,678	1,179,245	SRA	0	seed	Golden Promise	wt	N	1	immature grain (6-10 days post anthesis - from the middle six rows of the head) - control conditions
SRR513548	4,275,332	1,282,446	SRA	0	seed	Golden Promise	wt	O	1	immature grain (11-15 days post anthesis - from the middle six rows of the head) - control conditions