het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Hordeum vulgare (Barley) genome build 1 (hvu-b1)

Version ASM32608v1 of Hordeum vulgare cv. Morex from Ensembl Plants

Locus type


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Annotation source

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NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
hvu-b1r1-155Hordeum vulgare (Barley) 11-1:11528448-11528471-1551.23UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-261Hordeum vulgare (Barley) 11-1:21861435-21861482+900.72AUGGAUAAGGGUAUACAUGACUUUnearMIRNAShortStack
hvu-b1r1-552Hordeum vulgare (Barley) 11-1:66509421-66509444-850.68UUAGUGACGUGAGGAUAGCAAnearMIRNAShortStack
hvu-b1r1-973Hordeum vulgare (Barley) 11-1:144687742-144687857+1,29710.31CUAGCACUUUGAAUUCAGGUUGAAnearMIRNAShortStack
hvu-b1r1-1018Hordeum vulgare (Barley) 11-1:147550742-147550762+280.22AAGAAUUUUAGGACGGAGGAAnearMIRNAShortStack
hvu-b1r1-1139Hordeum vulgare (Barley) 11-1:154452824-154452845-430.34AUUUAGGUACAGAGGGAGCAGmiR5049nearMIRNAShortStack
hvu-b1r1-1486Hordeum vulgare (Barley) 11-1:242432582-242432625-1100.88AAGGAGAACGUAUACCCACCUnearMIRNAShortStack
hvu-b1r1-1807Hordeum vulgare (Barley) 11-2:54042509-54042532-5,28742.04UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
hvu-b1r1-1884Hordeum vulgare (Barley) 11-2:71404612-71404634+2532.01UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-2172Hordeum vulgare (Barley) 11-2:140291811-140291842-5,65844.99UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
hvu-b1r1-2452Hordeum vulgare (Barley) 11-2:169990358-169990406-1,31510.46CUCUUAUGUUGUGGGACGGAGnearMIRNAShortStack
hvu-b1r1-2617Hordeum vulgare (Barley) 11-2:174579711-174579792-650.52UUAACGACCUAGAACUACGCGCAUnearMIRNAShortStack
hvu-b1r1-3049Hordeum vulgare (Barley) 11-2:200432834-200432989-6295.00UUCAGGUUGAAUUUUGUCCAUGAUnearMIRNAShortStack
hvu-b1r1-3343Hordeum vulgare (Barley) 11H_unordered:9089287-9089370-900.72AUAGAAGGAUCGAUGAUGGUUnearMIRNAShortStack
hvu-b1r1-3570Hordeum vulgare (Barley) 11H_unordered:21583822-21583928-1521.21AGGAAGUGGUGUAGACUGCACGGAnearMIRNAShortStack
hvu-b1r1-4163Hordeum vulgare (Barley) 12-1:40312497-40312528+4,06932.36UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
hvu-b1r1-4339Hordeum vulgare (Barley) 12-1:71167696-71167727-4853.86UAUGAGCUUAGAAAACUGCAUnearMIRNAShortStack
hvu-b1r1-6023Hordeum vulgare (Barley) 12-2:168528185-168528206-630.50AUAGGACACAACAGAUAAGAAnearMIRNAShortStack
hvu-b1r1-6216Hordeum vulgare (Barley) 12-2:185063261-185063285+1040.83UCUGUAAACAAAUAUAAGACGnearMIRNAShortStack
hvu-b1r1-6316Hordeum vulgare (Barley) 12-2:190874402-190874425+6425.11GUCUGGGUGGUGUAGUUGGUnearMIRNAShortStack
hvu-b1r1-6858Hordeum vulgare (Barley) 12-2:216152322-216152394-1,1429.08UGAGCCGAACCAAUAUCACUCmiR171nearMIRNAShortStack
hvu-b1r1-6989Hordeum vulgare (Barley) 12-2:220666111-220666131-910.72UUUUUUUAGAUCUACAGGGAnearMIRNAShortStack
hvu-b1r1-7104Hordeum vulgare (Barley) 12-2:237492018-237492101+1961.56CGGUAUUGGUGCGGUUCAAUCmiR171nearMIRNAShortStack
hvu-b1r1-7206Hordeum vulgare (Barley) 12-2:240666205-240666306+890.71AAGGAGAAUGUAUACCCACCUnearMIRNAShortStack
hvu-b1r1-7562Hordeum vulgare (Barley) 12-2:262561927-262561948-620.49UGAAGUGUUUGGGGGAACUCmiR395nearMIRNAShortStack
hvu-b1r1-7586Hordeum vulgare (Barley) 12-2:265083816-265083893-5434.32UAAGCAGAAACGCCACGGACUnearMIRNAShortStack
hvu-b1r1-7658Hordeum vulgare (Barley) 12-2:268934312-268934352-1070.85UUUUGUAAGACGUUUUAGACAnearMIRNAShortStack
hvu-b1r1-7674Hordeum vulgare (Barley) 12-2:269124578-269124696+4633.68UGAGACACUUAUUUUGAGAACnearMIRNAShortStack
hvu-b1r1-7687Hordeum vulgare (Barley) 12-2:269323806-269323826-350.28AGGUUUAUAAUUAGGAACGGAnearMIRNAShortStack
hvu-b1r1-7691Hordeum vulgare (Barley) 12-2:269659515-269659538+2401.91CAUUAAUAUGGAUCGAAGGGAnearMIRNAShortStack
hvu-b1r1-8110Hordeum vulgare (Barley) 12HS_unordered:41042-41152+1020.81AGAGAUUGCACUAUAAACUACAUAnearMIRNAShortStack
hvu-b1r1-8277Hordeum vulgare (Barley) 13-1:3966376-3966407+1361.08AAGGAGAAUGUAUACCCACCUnearMIRNAShortStack
hvu-b1r1-8670Hordeum vulgare (Barley) 13-1:29043238-29043311+640.51AUAAAGACUUGUAUUUAGAAACGGnearMIRNAShortStack
hvu-b1r1-8701Hordeum vulgare (Barley) 13-1:30029381-30029469+3252.58UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-8804Hordeum vulgare (Barley) 13-1:46240831-46240949+3732.97UUUGCUGAGAGCUGCUCGGAUnearMIRNAShortStack
hvu-b1r1-8972Hordeum vulgare (Barley) 13-1:88423457-88423539+790.63AACACUUAUCUUGGGACGGAGnearMIRNAShortStack
hvu-b1r1-9345Hordeum vulgare (Barley) 13-1:196593960-196593983-520.41AGUAUUUUGGUUGGAGGGAGUnearMIRNAShortStack
hvu-b1r1-9808Hordeum vulgare (Barley) 13-2:56996875-56996898+1931.54UAAGUGAAGGCUCAGCGAAUGUUAnearMIRNAShortStack
hvu-b1r1-9828Hordeum vulgare (Barley) 13-2:57746191-57746237-8,06264.11AGACUUACAUUUGGGAACGGAnearMIRNAShortStack
hvu-b1r1-9862Hordeum vulgare (Barley) 13-2:58924737-58924828-360.29ACUAAAGGACUACAUACAGAGCAAnearMIRNAShortStack
hvu-b1r1-9875Hordeum vulgare (Barley) 13-2:59581260-59581355+600.48AUCUGGACAAACCUAAGACAAnearMIRNAShortStack
hvu-b1r1-9995Hordeum vulgare (Barley) 13-2:64463139-64463187-480.38AACUAAGUAUGGUCGGAGGGUmiR5070nearMIRNAShortStack
hvu-b1r1-10292Hordeum vulgare (Barley) 13-2:98974628-98974722+1501.19CUUUUUUUGGAUUUGUGGUCnearMIRNAShortStack
hvu-b1r1-10781Hordeum vulgare (Barley) 13-2:135564642-135564663-1651.31AUUUUCCUUGGUUGAAACAUCnearMIRNAShortStack
hvu-b1r1-11064Hordeum vulgare (Barley) 13-2:168289671-168289753-910.72UCCACUAGUAGACUAUAUACGGAUnearMIRNAShortStack
hvu-b1r1-11900Hordeum vulgare (Barley) 13-2:232064720-232064804-3492.78AUACUUUGAAUUUAGGUUGAAUUUnearMIRNAShortStack
hvu-b1r1-12031Hordeum vulgare (Barley) 13-2:241077921-241078094+18,168144.48GGGGAUGUAGCUCAAAUGGUnearMIRNAShortStack
hvu-b1r1-12192Hordeum vulgare (Barley) 13-2:249102921-249102941+1200.95UCUGACCGGGUACAGAUGAGCnearMIRNAShortStack
hvu-b1r1-13109Hordeum vulgare (Barley) 14-1:137690822-137690865-2662.12UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-13216Hordeum vulgare (Barley) 14-1:143527042-143527068+1551.23GGUGGGUCUUCUUGGCUAACmiR169nearMIRNAShortStack
hvu-b1r1-13741Hordeum vulgare (Barley) 14-1:243630945-243631060-3,10424.68UGGACUGAAGGGAGCUCCCUCmiR319nearMIRNAShortStack
hvu-b1r1-14156Hordeum vulgare (Barley) 14-1:273255428-273255455-7155.69UUUUUGUAAGACGUUGUAGACnearMIRNAShortStack
hvu-b1r1-14318Hordeum vulgare (Barley) 14-1:292551639-292551667-1371.09AAUGCAACUCUGGGUGAAGGACGGnearMIRNAShortStack
hvu-b1r1-15185Hordeum vulgare (Barley) 14-2:182737436-182737524+1130.90AUGACACUUACUUUGGGACGGnearMIRNAShortStack
hvu-MIR166b-m1Hordeum vulgare (Barley) 14-2:186192974-186193004-7,58760.33UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAmiRBase21-BestBlastHit
hvu-b1r1-16275Hordeum vulgare (Barley) 15-1:8266709-8266765-1291.03AGGACCUUUAGAACCGGUUGGUAAnearMIRNAShortStack
hvu-b1r1-16765Hordeum vulgare (Barley) 15-1:66435702-66435729-490.39UUAACGACCUAGAACUACGCGCAUnearMIRNAShortStack
hvu-b1r1-16810Hordeum vulgare (Barley) 15-1:69307807-69307829+1,41611.26CCGGGUGAUCUAGCCAUGAGCnearMIRNAShortStack
hvu-b1r1-16867Hordeum vulgare (Barley) 15-1:74296405-74296436-3302.62UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-18350Hordeum vulgare (Barley) 15-2:80555099-80555123-8666.89AUUUGUAGUGUUCGGAUUGAGUUUmiR1878nearMIRNAShortStack
hvu-b1r1-19234Hordeum vulgare (Barley) 15-2:176866659-176866779-1060.84UGGAUGCAGACUCCUCAAACGGAUnearMIRNAShortStack
hvu-MIR166b-m2Hordeum vulgare (Barley) 15-2:184688963-184688993+92,892738.70UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAmiRBase21-BestBlastHit
hvu-b1r1-19412Hordeum vulgare (Barley) 15-2:190065553-190065591-840.67UUUACAGAGAUCGUAAUGACAnearMIRNAShortStack
hvu-b1r1-19581Hordeum vulgare (Barley) 15-2:201035493-201035563+1941.54UGCCUGGCUCCCUGUAUGCCAmiR160nearMIRNAShortStack
hvu-b1r1-19724Hordeum vulgare (Barley) 15-2:210335736-210335833+660.53UCUGCCCAGAAUUACUUGUCAnearMIRNAShortStack
hvu-b1r1-20137Hordeum vulgare (Barley) 15-2:234037656-234037677+930.74UUUGCUGAGAGCUGCUCGGAUnearMIRNAShortStack
hvu-b1r1-20289Hordeum vulgare (Barley) 15-2:243523294-243523316-1991.58UCACAGAUAAUGGUGGCCCCUGnearMIRNAShortStack
hvu-b1r1-20615Hordeum vulgare (Barley) 15HS_unordered:477827-477847-450.36UAUAUUUUGGUACGGAGGAAGnearMIRNAShortStack
hvu-b1r1-20980Hordeum vulgare (Barley) 16-1:21951717-21951740-570.45AGCAACAGGACACACACACUCnearMIRNAShortStack
hvu-b1r1-21200Hordeum vulgare (Barley) 16-1:61950648-61950671+2622.08CUGAACAGCUCUCGGCAAAAAGGAnearMIRNAShortStack
hvu-b1r1-21263Hordeum vulgare (Barley) 16-1:62944773-62944794-6745.36UGAAUUUGUCCAUAGCAUCAGmiR9674nearMIRNAShortStack
hvu-b1r1-21425Hordeum vulgare (Barley) 16-1:85274631-85274718+510.41UUAAUAUGGAUUAGAGGGAGUnearMIRNAShortStack
hvu-b1r1-21499Hordeum vulgare (Barley) 16-1:113157927-113157964-1831.46UGCCUGGCUCCCUGUAUGCCAmiR160nearMIRNAShortStack
hvu-b1r1-21698Hordeum vulgare (Barley) 16-1:168631854-168631875+1421.13CUCUUACAUUGUGGGACGGAGnearMIRNAShortStack
hvu-b1r1-21776Hordeum vulgare (Barley) 16-1:175624571-175624606+440.35UCACAAGACGUAGAAGGGAGAnearMIRNAShortStack
hvu-b1r1-21841Hordeum vulgare (Barley) 16-1:201516977-201516999+450.36UUAUCUGGACAUCUUAGCAUCnearMIRNAShortStack
hvu-b1r1-21858Hordeum vulgare (Barley) 16-1:209350237-209350259+520.41AAUUUAAGACAAGUAGCAUGnearMIRNAShortStack
hvu-b1r1-21864Hordeum vulgare (Barley) 16-1:209514221-209514320+1050.84UUUCUGAACAAUGCUAAGACAnearMIRNAShortStack
hvu-b1r1-22280Hordeum vulgare (Barley) 16-1:275138432-275138460+870.69CUAGCAGACGACAAAGAUGUGACUnearMIRNAShortStack
hvu-b1r1-22405Hordeum vulgare (Barley) 16-1:283011333-283011414-5704.53UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-MIR1130-m1Hordeum vulgare (Barley) 16-1:308457373-308457478-340.27UCUGUAACUUAAUAUAAGACGmiR1130nearMIRNAmiRBase21-BestBlastHit
hvu-b1r1-22607Hordeum vulgare (Barley) 16-1:308457387-308457469-340.27UCUGUAACUUAAUAUAAGACGmiR1130nearMIRNAShortStack
hvu-b1r1-22745Hordeum vulgare (Barley) 16-2:49433007-49433100+1140.91UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-22769Hordeum vulgare (Barley) 16-2:54943038-54943155+4443.53UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
hvu-b1r1-22931Hordeum vulgare (Barley) 16-2:101616739-101616767+3863.07AAUGAAGAUACAGCGGCUCCAnearMIRNAShortStack
hvu-b1r1-22940Hordeum vulgare (Barley) 16-2:103604074-103604097+250.20AUAAAGACUUAUAUUUAGAAACGGnearMIRNAShortStack
hvu-b1r1-23127Hordeum vulgare (Barley) 16-2:140357007-140357067+1651.31ACAAUCGAGGAGCUCGUGGCAnearMIRNAShortStack
hvu-b1r1-23172Hordeum vulgare (Barley) 16-2:151841235-151841261-4313.43UUCCUUGACUCGUAACUGCAGnearMIRNAShortStack
hvu-b1r1-23678Hordeum vulgare (Barley) 16-2:212417389-212417425-2,57920.51UUCCACAGCUUUCUUGAACUUmiR396nearMIRNAShortStack
hvu-b1r1-23702Hordeum vulgare (Barley) 16-2:212639930-212639951+700.56UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-23807Hordeum vulgare (Barley) 16-2:220476177-220476197+540.43UCUUAUUUAGGGGUUUUCGGUnearMIRNAShortStack
hvu-b1r1-24077Hordeum vulgare (Barley) 16HL_unordered:5725542-5725580-3712.95AGGAGGAGCUCGAGUCGAGGAnearMIRNAShortStack
hvu-b1r1-24082Hordeum vulgare (Barley) 16HL_unordered:6131512-6131575-3903.10AUACUUUGAAUUUAGGUUGAAUUUnearMIRNAShortStack
hvu-b1r1-24132Hordeum vulgare (Barley) 16HS_unordered:1636241-1636338+940.75UAUAUGUUGGAUCAUUGAGGAnearMIRNAShortStack
hvu-b1r1-24275Hordeum vulgare (Barley) 17-1:6155672-6155694+870.69CGGCUGCAGGUCGGAGAUGGGnearMIRNAShortStack
hvu-b1r1-24371Hordeum vulgare (Barley) 17-1:9914883-9915007-2832.25CAUAUUUAGGAACGGAACGGAnearMIRNAShortStack
hvu-b1r1-24652Hordeum vulgare (Barley) 17-1:33948925-33948945+1030.82UGUAGAUACUCCCUAAGGCUUmiR5200nearMIRNAShortStack
hvu-MIR5050-m1Hordeum vulgare (Barley) 17-1:34233979-34234097+1601.27ACCAGCAAAACGGCGGCGGACnearMIRNAmiRBase21-BestBlastHit
hvu-b1r1-24908Hordeum vulgare (Barley) 17-1:66851364-66851388-600.48ACUAAUAUGGAACGUAGGGAGnearMIRNAShortStack
hvu-b1r1-25582Hordeum vulgare (Barley) 17-1:178652336-178652358+1621.29UUUGCGCACAACGGAGGAACCnearMIRNAShortStack
hvu-b1r1-25773Hordeum vulgare (Barley) 17-1:249164028-249164053-1180.94AGGACCUUUAGGACCGGUUGGUAAnearMIRNAShortStack
hvu-b1r1-25862Hordeum vulgare (Barley) 17-1:256239316-256239410+7606.04UGAGCGACAAGUAAUAUGGAUnearMIRNAShortStack
hvu-b1r1-25992Hordeum vulgare (Barley) 17-1:266317273-266317331-2592.06AUCUGAGCAGCUCUCGGCAAAnearMIRNAShortStack
hvu-b1r1-26283Hordeum vulgare (Barley) 17-2:1366298-1366331-590.47UUCUCAAAUCUUAUCCAGACAnearMIRNAShortStack
hvu-b1r1-26443Hordeum vulgare (Barley) 17-2:17827955-17827976-520.41UAAGAGGGACAUAAUUUCGGUnearMIRNAShortStack
hvu-b1r1-26484Hordeum vulgare (Barley) 17-2:22187936-22188018-7285.79UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAShortStack
hvu-b1r1-26487Hordeum vulgare (Barley) 17-2:22275182-22275292+590.47AGAAUUAUGGGACGAAGGGAGnearMIRNAShortStack
hvu-b1r1-26643Hordeum vulgare (Barley) 17-2:31455687-31455712+2732.17AAUUAAUUUGGAUCAGAGGGGnearMIRNAShortStack
hvu-b1r1-26664Hordeum vulgare (Barley) 17-2:33955804-33955914-3803.02AGGAAGUGGUGUAGAUUGCACGGAnearMIRNAShortStack
hvu-b1r1-26757Hordeum vulgare (Barley) 17-2:118139461-118139492+880.70AAGGAGAACGUAUACCCACCUnearMIRNAShortStack
hvu-b1r1-27034Hordeum vulgare (Barley) 17-2:165537085-165537353-78,862627.13UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
hvu-b1r1-27375Hordeum vulgare (Barley) 17-2:226580176-226580262+980.78AAGAAUUUUAGGACGGAGGAAnearMIRNAShortStack
hvu-b1r1-27579Hordeum vulgare (Barley) 17-2:248791912-248792080-2,00415.94UACACGCCGGACUGGUGACAGCnearMIRNAShortStack
hvu-b1r1-27723Hordeum vulgare (Barley) 17-2:255570797-255570820-5904.69UGCACUGCCUCUUCCCUGGCmiR408nearMIRNAShortStack
hvu-b1r1-27724Hordeum vulgare (Barley) 17-2:255570903-255570947-4,13432.88CAGGGAUGGAGCAGAGCAAGGmiR408nearMIRNAShortStack
hvu-b1r1-27958Hordeum vulgare (Barley) 17-2:274520830-274520852+3,54628.20UGACAGAAGAGAGCGAGCACmiR156nearMIRNAShortStack
hvu-MIR6196-m1Hordeum vulgare (Barley) 17-2:275572838-275572973-960.76AGGACGAGGAGAUGGAGAGGAmiR6196nearMIRNAmiRBase21-BestBlastHit
hvu-b1r1-28337Hordeum vulgare (Barley) 17-2:290744082-290744124+1,91315.21ACUGCACCGAUGACUUGGAUGACnearMIRNAShortStack