Data from Lunardon et al. (2020)
Data from Lunardon et al. (2020)Version 0.32 assembly of the Cuscuta campestris genome from Vogel et al. 2018
Click links below to show sub-sets of annotations
| ShortStack | Shahid_et_al_2018 | |
| MIRNA | 91 | 46 |
| nearMIRNA | 51 | 4 |
| siRNA20 | 12 | 0 |
| siRNA21 | 675 | 4 |
| siRNA22 | 6,317 | 5 |
| siRNA23 | 717 | 0 |
| siRNA24 | 106,574 | 3 |
| OtherRNA | 11,454 | 9 |
| NotExpressed | 0 | 3 |
| accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
|---|---|---|---|---|---|---|---|---|---|---|
| ccm-b0.32_refset1 | 73,710,786 | 8,495,617 | x | 1 | mixed | dotti | wild-type | a | 1 | Merge of 8 libraries .. 4 from C. campestris / A. thaliana interfaces and 4 from C. campestris stems |