Lunardon et al. 2020

Genome and annotations summary

Version v2.0 of Daucus carota subsp. sativus cv. Nantes-type (DH1) from Phytozome

Small RNA Loci

Click links below to show sub-sets of annotations

Small RNA-seq data

Reference Set

accession

aligned reads

unaligned reads

source db

is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.

tissue

ecotype / cultivar

genotype

replicate id Alignments that are biological replicates have the same replicate ids

refset id If set, the alignment is part of the indicated reference set

description

carrot_all_reference_set

14,271,840

2,712,590

none

mixed

Burpee

refset1

merge of 2 libraries - reference set 1

Invidiual alignments (2)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
GSM2805297	4,141,074	1,001,229	GEO	0	root	Burpee	wt	A	1	root (6-weeks-old plants -- whole root) -- control conditions
GSM2805296	10,130,766	1,711,361	GEO	0	leaf	Burpee	wt	B	1	leaf (5-weeks-old plants -- whole leaf) -- control conditions

	ShortStack
MIRNA	41
nearMIRNA	72
siRNA20	22
siRNA21	673
siRNA22	538
siRNA23	216
siRNA24	14,179
OtherRNA	11,989
NotExpressed	0

Data from Lunardon et al. (2020)

Genome and annotations summary

Daucus carota (Carrot) genome build 2.0 (dca-b2.0)

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Download genome assembly FASTA file

BLAST search

Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (2)