het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Daucus carota (Carrot) genome build 2.0 (dca-b2.0)

Version v2.0 of Daucus carota subsp. sativus cv. Nantes-type (DH1) from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
dca-b2.0r1-972Daucus carota (Carrot) 2.0DCARv2_Chr1:10110753-10110773+140.82UUCUCUGUGAUUGUGAUUUUsiRNA20ShortStack
dca-b2.0r1-1832Daucus carota (Carrot) 2.0DCARv2_Chr1:25033805-25033857+251.47UAAUUGUCGUAGUGUAUAUGsiRNA20ShortStack
dca-b2.0r1-3550Daucus carota (Carrot) 2.0DCARv2_Chr1:47152720-47152760+110.65GACGUGAAUCUGCAGUUGAGCsiRNA20ShortStack
dca-b2.0r1-3603Daucus carota (Carrot) 2.0DCARv2_Chr1:47697933-47697954+734.30UUUCUUGAAAUCUGAUUUUUsiRNA20ShortStack
dca-b2.0r1-3815Daucus carota (Carrot) 2.0DCARv2_Chr1:49393748-49393840+191.12UUUCUUGAAAUCUGAUUUUAsiRNA20ShortStack
dca-b2.0r1-4175Daucus carota (Carrot) 2.0DCARv2_Chr2:2492632-2492656+110.65UACGAAUUGUAGAUACAUGCsiRNA20ShortStack
dca-b2.0r1-4183Daucus carota (Carrot) 2.0DCARv2_Chr2:2619935-2619961-160.94UACGAAUUGUAGAUACAUGCsiRNA20ShortStack
dca-b2.0r1-6757Daucus carota (Carrot) 2.0DCARv2_Chr2:37101985-37102096+120.71UCUUGUGGAUCCAAAAAUUUsiRNA20ShortStack
dca-b2.0r1-9776Daucus carota (Carrot) 2.0DCARv2_Chr3:34841659-34841680-251.47UGGUCUGUUCGCGUGGAAGCsiRNA20ShortStack
dca-b2.0r1-9797Daucus carota (Carrot) 2.0DCARv2_Chr3:34950869-34950895-50429.67UUGGACUGAAGGGAGCUCCUmiR319siRNA20ShortStack
dca-b2.0r1-9798Daucus carota (Carrot) 2.0DCARv2_Chr3:34953281-34953370+20512.07UUGGACUGAAGGGAGCUCCAmiR319siRNA20ShortStack
dca-b2.0r1-10067Daucus carota (Carrot) 2.0DCARv2_Chr3:38947534-38947713.291.71CGGAUCUAGUAAGACGCACUsiRNA20ShortStack
dca-b2.0r1-10954Daucus carota (Carrot) 2.0DCARv2_Chr3:47069511-47069647-3,838225.97AAACGGGGUUGUGGGAGAGCsiRNA20ShortStack
dca-b2.0r1-12558Daucus carota (Carrot) 2.0DCARv2_Chr4:20981248-20981331.623.65UUCGACUCUGGCUCACCCCCsiRNA20ShortStack
dca-b2.0r1-16684Daucus carota (Carrot) 2.0DCARv2_Chr5:36417498-36417804-25715.13GGGAAACUGGGUACAAGCUCsiRNA20ShortStack
dca-b2.0r1-18807Daucus carota (Carrot) 2.0DCARv2_Chr6:20882321-20882687-744.36UAUCCAACGAUGUAGAAUGGsiRNA20ShortStack
dca-b2.0r1-22020Daucus carota (Carrot) 2.0DCARv2_Chr7:27198218-27198397-1478.66UUAGAUUCGCGCACAAAUUUsiRNA20ShortStack
dca-b2.0r1-23113Daucus carota (Carrot) 2.0DCARv2_Chr8:4710247-4710334.120.71UAAAGAGCUUGAAAGAGAAUGUUGsiRNA20ShortStack
dca-b2.0r1-23462Daucus carota (Carrot) 2.0DCARv2_Chr8:13560989-13561068+140.82CUGUUGUACUUAUGGUGAUAsiRNA20ShortStack
dca-b2.0r1-24022Daucus carota (Carrot) 2.0DCARv2_Chr8:22390794-22390836+130.77UAUGUGCUCGAGAAUUAAAAsiRNA20ShortStack
dca-b2.0r1-24151Daucus carota (Carrot) 2.0DCARv2_Chr8:23777406-23777427-76945.28UUUCUUGAAAUCUGAUUUUUsiRNA20ShortStack
dca-b2.0r1-24615Daucus carota (Carrot) 2.0DCARv2_Chr8:28902778-28902890-55232.50UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack