Data from Lunardon et al. (2020)

Genome and annotations summary

Citrullus lanatus (Watermelon) genome build 1 (clt-b1)

Version v1 of Citrullus lanatus subsp. vulgaris cv 97103 from The Cucurbit Genomics Database

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Download genome assembly FASTA file

BLAST search

Small RNA Loci

Click links below to show sub-sets of annotations

	ShortStack	Jagadeeswaran_et_al_2012
MIRNA	65	0
nearMIRNA	22	0
siRNA20	9	0
siRNA21	280	1
siRNA22	493	0
siRNA23	18	0
siRNA24	82,832	0
OtherRNA	1,840	0
NotExpressed	0	0

Small RNA-seq data

Reference Set

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
watermelon_all_reference_set	149,342,699	25,155,128	none	1	mixed	mixed	wt	refset1	1	merge of 14 libraries - reference set 1

Invidiual alignments (14)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
GSM936361	5,626,276	1,553,055	GEO	0	leaf -- stem -- fruit flesh -- rind -- placenta	PI438676	wt	A	1	leaf and stem (3-weeks-old plants) -- fruit flesh -- rind and placenta (10 days after pollination) -- control conditions
SRR3318267	11,624,171	14,552,656	SRA	0	leaf	JJZ-M	wt	B	1	leaf (2-true-leaf stage) -- collected after 25 days post-inoculation with Cucumber Green Mottle Mosaic Virus
SRR3318270	28,408,964	2,045,724	SRA	0	leaf	JJZ-M	wt	C	1	leaf (2-true-leaf stage) -- collected after 25 days post-inoculation with mock solution
SRR357407	9,627,449	703,168	SRA	0	part above cotyledons	IVSM9 self-grafted	wt	D	1	part above cotyledons (2-true-leaf stage) -- control conditions
SRR357408	9,648,873	814,367	SRA	0	part above cotyledons	IVSM9 grafted onto Lagenaria siceraria	wt	E	1	part above cotyledons (2-true-leaf stage) -- control conditions
SRR357409	4,864,864	617,022	SRA	0	part above cotyledons	IVSM9 grafted onto Cucurbita maximaxCucurbita moschata	wt	F	1	part above cotyledons (2-true-leaf stage) -- control conditions
SRR3823160	8,942,805	498,295	SRA	0	leaf	Y134	wt	G	1	leaf (4-leaf stage) -- control conditions
SRR3823161	9,923,954	600,864	SRA	0	leaf	Y134	wt	G	1	leaf (4-leaf stage) -- control conditions
SRR3823162	9,303,635	550,318	SRA	0	leaf	Y134	wt	H	1	leaf (4-leaf stage) -- collected after 3-days melatonin treatment
SRR3823163	11,135,304	766,561	SRA	0	leaf	Y134	wt	H	1	leaf (4-leaf stage) -- collected after 3-days melatonin treatment
SRR3823164	11,723,818	758,583	SRA	0	leaf	Y134	wt	I	1	leaf (4-leaf stage) -- collected after 36h cold treatment
SRR3823165	8,906,356	553,598	SRA	0	leaf	Y134	wt	I	1	leaf (4-leaf stage) -- collected after 36h cold treatment
SRR3823166	9,014,670	532,648	SRA	0	leaf	Y134	wt	J	1	leaf (4-leaf stage) -- collected after 3-days melatonin treatment and subsequent 36h cold treatment
SRR3823167	10,591,560	608,269	SRA	0	leaf	Y134	wt	J	1	leaf (4-leaf stage) -- collected after 3-days melatonin treatment and subsequent 36h cold treatment