Lunardon et al. 2020

Genome and annotations summary

Version v2.0 of Prunus persica cv. Lovell from Phytozome

Small RNA Loci

Click links below to show sub-sets of annotations

Small RNA-seq data

Reference Set

accession

aligned reads

unaligned reads

source db

is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.

tissue

ecotype / cultivar

genotype

replicate id Alignments that are biological replicates have the same replicate ids

refset id If set, the alignment is part of the indicated reference set

description

peach_all_reference_set

69,637,969

18,352,887

none

mixed

refset1

merge of 7 libraries - reference set 1

Invidiual alignments (7)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
GSM944973	3,780,046	1,348,782	GEO	0	flower	Lovell	wt	A	1	flower (whole flower) -- control conditions
GSM944974	3,324,333	1,568,010	GEO	0	fruit	Lovell	wt	B	1	fruit (mixed stages: 19 -- 40 and 82 days after bloom) -- control conditions
SRR3647209	12,874,062	4,052,883	SRA	0	fruit	Troubador	wt	C	1	fruit (6-years-old plants -- 35 -- 55 -- 75 -- 90 -- 105 days after bloom -- yellow flesh) -- control conditions
SRR504531	20,516,657	2,043,670	SRA	0	root	Lovell	wt	D	1	root (seedling stage) -- control conditions
SRR504532	15,853,618	2,457,703	SRA	0	leaf	Lovell	wt	E	1	leaf (emerging first leaves) -- control conditions
SRR948299	9,679,451	4,859,441	SRA	0	leaf -- stem -- flower bud	Lovell	wt	F	1	leaf -- stem -- flower bud (young emerging leaves -- young stems) -- control conditions
SRX016320	3,609,802	2,022,398	SRA	0	leaf	Siberian C	wt	G	1	leaf -- from a peach latent mosaic viroid-infected tree

	miRBase21-BestBlastHit	Zhu_et_al_2012	ShortStack
MIRNA	83	0	38
nearMIRNA	23	0	72
siRNA20	2	0	21
siRNA21	23	1	617
siRNA22	1	0	191
siRNA23	0	0	194
siRNA24	35	0	38,523
OtherRNA	4	0	1,062
NotExpressed	15	0	0

Data from Lunardon et al. (2020)

Genome and annotations summary

Prunus persica (Peach) genome build 2.0 (ppe-b2.0)

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Download genome assembly FASTA file

BLAST search

Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (7)