het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Prunus persica (Peach) genome build 2.0 (ppe-b2.0)

Version v2.0 of Prunus persica cv. Lovell from Phytozome

Locus type


Warning: Undefined array key "ann_source" in /data/www/html/multiannotations.php on line 46

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ppe-MIR8133-m1Prunus persica (Peach) 2.0Pp01:498109-498270+4234.81UCCUGUGCGAACGUCCAGAAGmiR8133nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-136Prunus persica (Peach) 2.0Pp01:498128-498249+4224.80UCCUGUGCGAACGUCCAGAAGmiR8133nearMIRNAShortStack
ppe-b2.0r1-227Prunus persica (Peach) 2.0Pp01:891687-891758+1,26414.37AGUUAAGUUGGUUAGUUAGGCAUGnearMIRNAShortStack
ppe-MIR7122b-m1Prunus persica (Peach) 2.0Pp01:2244304-2244423+3,72342.31UUAUACAAUGAAAUCACGGUCGmiR7122nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-531Prunus persica (Peach) 2.0Pp01:2244321-2244347+3,71642.23UUAUACAAUGAAAUCACGGUCGmiR7122nearMIRNAShortStack
ppe-b2.0r1-785Prunus persica (Peach) 2.0Pp01:3105330-3105528-3724.23AGGUGCUGACGUCAGGCUGGCAUUnearMIRNAShortStack
ppe-b2.0r1-1389Prunus persica (Peach) 2.0Pp01:5641815-5641835-5025.71GAGCCAAGGAUGAAUUGCCGGmiR169nearMIRNAShortStack
ppe-MIR169k-m1Prunus persica (Peach) 2.0Pp01:5660948-5661097-901.02GAGCCAAGGAUGAAUUGCCGGmiR169nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-1394Prunus persica (Peach) 2.0Pp01:5662992-5663087+5265.98UGAAGAGAUGGAGAGUAGAUAmiR169nearMIRNAShortStack
ppe-b2.0r1-1835Prunus persica (Peach) 2.0Pp01:7693923-7693997+3343.80ACUCCUUUUGUGUUGAUUGUUCGUnearMIRNAShortStack
ppe-b2.0r1-2316Prunus persica (Peach) 2.0Pp01:9870067-9870090-180.21AGGCUAUUUGUUCAUACAAACGCAnearMIRNAShortStack
ppe-b2.0r1-2507Prunus persica (Peach) 2.0Pp01:10803184-10803223+4945.61GUGGAGUCUGAUACCUGUUGGCGUnearMIRNAShortStack
ppe-b2.0r1-3609Prunus persica (Peach) 2.0Pp01:18278188-18278242+3113.53AAAAGAUGACGGUGGAUUCCAUGAnearMIRNAShortStack
ppe-b2.0r1-4372Prunus persica (Peach) 2.0Pp01:24916293-24916333-510.58UCGGGUUGAGUGUAUUUCCCUGGGnearMIRNAShortStack
ppe-MIR395m-m1Prunus persica (Peach) 2.0Pp01:27720832-27720962-981.11CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
ppe-MIR395l-m1Prunus persica (Peach) 2.0Pp01:27739824-27739926-1,87121.26CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-4939Prunus persica (Peach) 2.0Pp01:27747339-27747407+1531.74GUUCCUUCAAACACUUCAUUmiR395nearMIRNAShortStack
ppe-MIR395d-m1Prunus persica (Peach) 2.0Pp01:27764041-27764256-2192.49CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
ppe-MIR395o-m1Prunus persica (Peach) 2.0Pp01:27768992-27769074+921.05GUUCCCUCAAACACUUCAUUmiR395nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-5366Prunus persica (Peach) 2.0Pp01:29922003-29922215-1141.30CGGAAAGUGCUUUUCAGCGUGCnearMIRNAShortStack
ppe-b2.0r1-7367Prunus persica (Peach) 2.0Pp01:39596375-39596403-860.98ACGGUAAGGUGGAAGCGUUGUAUGnearMIRNAShortStack
ppe-b2.0r1-7512Prunus persica (Peach) 2.0Pp01:40254237-40254403-1,07012.16UUCCACAGCUUUCUUGAACGUmiR396nearMIRNAShortStack
ppe-MIR396a-m1Prunus persica (Peach) 2.0Pp01:40254306-40254403-1,06512.10UUCCACAGCUUUCUUGAACGUmiR396nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-7861Prunus persica (Peach) 2.0Pp01:41713509-41713531-660.75UAAACCACCUUAUAAACAACCUCnearMIRNAShortStack
ppe-b2.0r1-8104Prunus persica (Peach) 2.0Pp01:42710284-42710379+1,08512.33AAUUUGUGAUUGAUUGGGAAUAACnearMIRNAShortStack
ppe-b2.0r1-8580Prunus persica (Peach) 2.0Pp01:44945259-44945405+5075.76UUAGAUUGAGAGAGAAGAUGAnearMIRNAShortStack
ppe-MIR394b-m1Prunus persica (Peach) 2.0Pp01:46215543-46215698-96210.93UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-8812Prunus persica (Peach) 2.0Pp01:46215568-46215675-96210.93UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
ppe-b2.0r1-9343Prunus persica (Peach) 2.0Pp02:1223030-1223100-2893.28AGUGGUCACCCACCGUUGGAUAUUnearMIRNAShortStack
ppe-b2.0r1-10378Prunus persica (Peach) 2.0Pp02:7456089-7456139+2262.57ACAUUACCUUUCUCACGUAAGCUUnearMIRNAShortStack
ppe-b2.0r1-11976Prunus persica (Peach) 2.0Pp02:19072710-19072942+1,12812.82AAGCAUGGAAAAUAGUUGUCUGGCnearMIRNAShortStack
ppe-b2.0r1-11978Prunus persica (Peach) 2.0Pp02:19078749-19078794+98211.16UCCAGUGGAAGGUGAGUGCUGnearMIRNAShortStack
ppe-b2.0r1-13004Prunus persica (Peach) 2.0Pp02:23268470-23268500+9,049102.84GGAAUGUUGUCUGGCUCGAGGmiR166nearMIRNAShortStack
ppe-b2.0r1-13005Prunus persica (Peach) 2.0Pp02:23268575-23268609+176,9812,011.36UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
ppe-MIR393a-m1Prunus persica (Peach) 2.0Pp02:26224921-26225015+3283.73UCCAAAGGGAUCGCAUUGAUCmiR393nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-13740Prunus persica (Peach) 2.0Pp02:26224930-26225006+3283.73UCCAAAGGGAUCGCAUUGAUCmiR393nearMIRNAShortStack
ppe-b2.0r1-14215Prunus persica (Peach) 2.0Pp02:29621764-29621791-1,39915.90CGAGCCGAAUCAAUAUCACUCmiR171nearMIRNAShortStack
ppe-b2.0r1-14216Prunus persica (Peach) 2.0Pp02:29621867-29621891-1,45216.50UGUGAUAUUGGUUCGGUUCAUAmiR171nearMIRNAShortStack
ppe-b2.0r1-14226Prunus persica (Peach) 2.0Pp02:29692104-29692128+19,365220.08UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
ppe-MIR399c-m1Prunus persica (Peach) 2.0Pp03:1446492-1446638+120.14UGCCAAAGAAGAGUUGCCCUAmiR399nearMIRNAmiRBase21-BestBlastHit
ppe-MIR399n-m1Prunus persica (Peach) 2.0Pp03:5253496-5253617-2142.43UGCCAAAGGAGAUUUGCUCGGmiR399nearMIRNAmiRBase21-BestBlastHit
ppe-MIR156h-m1Prunus persica (Peach) 2.0Pp03:16336810-16336918+284,2113,230.01UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-18000Prunus persica (Peach) 2.0Pp03:21158974-21159145+8239.35AAAAGAUGACGGUGGAUUCCACAnearMIRNAShortStack
ppe-b2.0r1-18033Prunus persica (Peach) 2.0Pp03:21368005-21368042-1111.26AGGUAGAGUUUUGGAAGAGGUnearMIRNAShortStack
ppe-b2.0r1-18920Prunus persica (Peach) 2.0Pp03:25329492-25329514-3443.91AUGUCGCAGGAGAGAUGGCACmiR3627nearMIRNAShortStack
ppe-b2.0r1-19162Prunus persica (Peach) 2.0Pp03:26848358-26848390-2002.27UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAShortStack
ppe-MIR169i-m1Prunus persica (Peach) 2.0Pp03:27020399-27020594+220.25UAGCCAAGGAUGACUUGCCUGCmiR169nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-19186Prunus persica (Peach) 2.0Pp03:27065768-27065921+2,83132.17AGAGAGUGUAGGUAGACAAAAGAGnearMIRNAShortStack
ppe-b2.0r1-20100Prunus persica (Peach) 2.0Pp04:5015824-5016031-2,37326.97ACGGUCAUGUGGUACGUCGUGUACnearMIRNAShortStack
ppe-MIR2111a-m1Prunus persica (Peach) 2.0Pp04:5127334-5127427-140.16UAAUCUGCAUCCUGAGGUUUAmiR2111nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-20220Prunus persica (Peach) 2.0Pp04:5780478-5780579+1181.34AGAGAGAAACACCUUCCACGUGCUnearMIRNAShortStack
ppe-b2.0r1-20251Prunus persica (Peach) 2.0Pp04:5965784-5965885-3754.26CCAACGUCUGGCUUUUGGUGAnearMIRNAShortStack
ppe-b2.0r1-20328Prunus persica (Peach) 2.0Pp04:6342157-6342180+4625.25AGCUAGGUGCAACAAGUUCAAmiR7125nearMIRNAShortStack
ppe-b2.0r1-20329Prunus persica (Peach) 2.0Pp04:6342211-6342231+5966.77CGAACUUAUUGCAACUAGCUUmiR7125nearMIRNAShortStack
ppe-b2.0r1-24071Prunus persica (Peach) 2.0Pp05:1588887-1588915-1,69719.29CCCGCCUUGCAUCAACUGAAUmiR168nearMIRNAShortStack
ppe-b2.0r1-24072Prunus persica (Peach) 2.0Pp05:1588990-1589020-88,6321,007.29UCGCUUGGUGCAGGUCGGGAAmiR168nearMIRNAShortStack
ppe-MIR6273-m1Prunus persica (Peach) 2.0Pp05:3421262-3421384+110.13AAUGCAGCAUGAUUUUUUUUUmiR6273nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-24848Prunus persica (Peach) 2.0Pp05:5711627-5711648-310.35UAGUUGCUGGAACAUUUGGCAUAnearMIRNAShortStack
ppe-b2.0r1-25265Prunus persica (Peach) 2.0Pp05:8701977-8701997+1091.24CAGGUGGUGUUGUUCUUGCUGnearMIRNAShortStack
ppe-b2.0r1-25390Prunus persica (Peach) 2.0Pp05:9189087-9189110+460.52AUGGUUAAUAUAUUUUACGUCGGUnearMIRNAShortStack
ppe-b2.0r1-25498Prunus persica (Peach) 2.0Pp05:9853007-9853089+2412.74AUCGAUUAGAGUAGUUUAGAGCGUnearMIRNAShortStack
ppe-MIR6275-m1Prunus persica (Peach) 2.0Pp05:10003687-10003793-850.97CAGUGGAAGUAGCAAGGGGAAmiR6275nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-25985Prunus persica (Peach) 2.0Pp05:11877857-11877905+390.44AUGAGAUUUUGGGGUUGGACUUAnearMIRNAShortStack
ppe-b2.0r1-26318Prunus persica (Peach) 2.0Pp05:13330844-13330867-1832.08GCAAGUUGUCUUUAGGCUAGUCnearMIRNAShortStack
ppe-b2.0r1-27014Prunus persica (Peach) 2.0Pp05:17447873-17447952+48,588552.19UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAShortStack
ppe-MIR156g-m1Prunus persica (Peach) 2.0Pp05:17447875-17447956+48,588552.19UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-27110Prunus persica (Peach) 2.0Pp05:18178078-18178157-5215.92UCGCUUGGUGCAGGUCGGGAAmiR168nearMIRNAShortStack
ppe-b2.0r1-27138Prunus persica (Peach) 2.0Pp05:18376977-18377002+1121.27UCUUGACACGUAGGAAUCCGGAAAnearMIRNAShortStack
ppe-MIR156b-m1Prunus persica (Peach) 2.0Pp06:1928560-1928648-1,987,48422,587.39UUGACAGAAGAAAGAGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-27490Prunus persica (Peach) 2.0Pp06:1928561-1928648-1,987,48422,587.39UUGACAGAAGAAAGAGAGCACmiR156nearMIRNAShortStack
ppe-b2.0r1-28898Prunus persica (Peach) 2.0Pp06:7792247-7792538+6026.84AAAGGACUUGUAGUUCAAGUGGUAnearMIRNAShortStack
ppe-b2.0r1-28967Prunus persica (Peach) 2.0Pp06:8073382-8073405-230.26AUCCAAUAGACACAUGACAUGUAGnearMIRNAShortStack
ppe-MIR8126-m1Prunus persica (Peach) 2.0Pp06:8374973-8375159+1,34815.32UCUGAGUCAGAUUACUGAAUAmiR8126nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-29066Prunus persica (Peach) 2.0Pp06:8375023-8375117+1,34615.30UCUGAGUCAGAUUACUGAAUAmiR8126nearMIRNAShortStack
ppe-b2.0r1-29067Prunus persica (Peach) 2.0Pp06:8381449-8381471+2883.27UAAGGUUGAGCCGGAAAUCGGAnearMIRNAShortStack
ppe-b2.0r1-29545Prunus persica (Peach) 2.0Pp06:11124335-11124422+2482.82AGGGAAAGAAGGUUCAAACUCGAGnearMIRNAShortStack
ppe-b2.0r1-30575Prunus persica (Peach) 2.0Pp06:19030204-19030227-200.23AACAGUUCAGACGCUUUGUUACAUnearMIRNAShortStack
ppe-b2.0r1-31064Prunus persica (Peach) 2.0Pp06:21595982-21596004-1071.22AUGCGCAACGAACACAUAUGUCUCnearMIRNAShortStack
ppe-b2.0r1-32235Prunus persica (Peach) 2.0Pp06:26574904-26574936+46,186524.90UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
ppe-MIR6277-m1Prunus persica (Peach) 2.0Pp06:30077200-30077295-8429.57UGUGUGGAAAGAGCGAGACGUmiR6277nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-33282Prunus persica (Peach) 2.0Pp07:2778960-2779095-1291.47AAGGUUAUGUUUGUUGAUCGUCGUnearMIRNAShortStack
ppe-b2.0r1-33424Prunus persica (Peach) 2.0Pp07:4211634-4211678-2212.51AGUGGUCACCCACCGUUGGAUAUUnearMIRNAShortStack
ppe-b2.0r1-33608Prunus persica (Peach) 2.0Pp07:6598962-6598986-1111.26AGGGGUUGCACCGAAUUUCGAGUUnearMIRNAShortStack
ppe-MIR156a-m1Prunus persica (Peach) 2.0Pp07:18998140-18998228-1221.39GUGACAGAAGAAAGAGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-36185Prunus persica (Peach) 2.0Pp07:19545913-19546021+1,00811.46AGGAUACGAACUCAAGUGCAGAAUnearMIRNAShortStack
ppe-b2.0r1-36370Prunus persica (Peach) 2.0Pp07:20846180-20846238-2963.36AUUGAUCGGGAAUAAUAAAAUGGUnearMIRNAShortStack
ppe-b2.0r1-36496Prunus persica (Peach) 2.0Pp07:21702350-21702372+2,74331.17UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
ppe-b2.0r1-37362Prunus persica (Peach) 2.0Pp08:3705824-3705851-1832.08GGAGACGUAGGCACAAUUGGCUGAnearMIRNAShortStack
ppe-b2.0r1-37478Prunus persica (Peach) 2.0Pp08:4472905-4473020+7628.66CACUGAUAGAAUUGGGGGCACnearMIRNAShortStack
ppe-b2.0r1-37675Prunus persica (Peach) 2.0Pp08:5579116-5579318-2572.92UCUUGACACGUAGGAAUCCGGAAAnearMIRNAShortStack
ppe-b2.0r1-38248Prunus persica (Peach) 2.0Pp08:10815400-10815457+830.94AAAGUUGCUUUUGCUGUGCUUUGAnearMIRNAShortStack
ppe-b2.0r1-38597Prunus persica (Peach) 2.0Pp08:12460305-12460494-3724.23AGAGAGAUUAUAGAAUACUACGGUnearMIRNAShortStack
ppe-b2.0r1-39817Prunus persica (Peach) 2.0Pp08:17429040-17429330-3,51639.96CUAGGCUCAUCUUACAUCUACCnearMIRNAShortStack
ppe-MIR6285-m1Prunus persica (Peach) 2.0Pp08:17429089-17429169-3,14435.73CUAGGCUCAUCUUACAUCUACCnearMIRNAmiRBase21-BestBlastHit
ppe-b2.0r1-40218Prunus persica (Peach) 2.0Pp08:19422476-19422567+2793.17CUGUGAUUGACAGGAAAGUAGGAGnearMIRNAShortStack