Data from Lunardon et al. (2020)
Data from Lunardon et al. (2020)Version v3.0 of Malus x domestica cv. Golden Delicious from The Genome Database for Rosaceae
Click links below to show sub-sets of annotations
| miRBase21-BestBlastHit | Xia_et_al_2012 | ShortStack | |
| MIRNA | 156 | 0 | 95 |
| nearMIRNA | 24 | 0 | 167 |
| siRNA20 | 3 | 0 | 40 |
| siRNA21 | 22 | 3 | 1,529 |
| siRNA22 | 0 | 0 | 1,645 |
| siRNA23 | 0 | 0 | 133 |
| siRNA24 | 7 | 0 | 91,534 |
| OtherRNA | 11 | 0 | 4,189 |
| NotExpressed | 10 | 0 | 0 |
| accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
|---|---|---|---|---|---|---|---|---|---|---|
| apple_all_reference_set | 312,814,204 | 139,707,441 | none | 1 | mixed | mixed | wt | refset1 | 1 | merge of 41 libraries - reference set 1 |
| accession | aligned reads | unaligned reads | source db | is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species. | tissue | ecotype / cultivar | genotype | replicate id Alignments that are biological replicates have the same replicate ids | refset id If set, the alignment is part of the indicated reference set | description |
|---|---|---|---|---|---|---|---|---|---|---|
| GSM880654 | 3,801,495 | 1,639,906 | GEO | 0 | flower | Golden delicious -- grafted on M.111 | wt | A | 1 | flower (2-years-old plants -- whole flower) -- control conditions |
| SRX653568 | 3,995,796 | 3,164,934 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Malling Merton 111 EMLA | wt | AA | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653566 | 5,673,617 | 4,560,005 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Malling Merton 111 EMLA | wt | AA | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653567 | 5,984,247 | 4,964,567 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Malling Merton 111 EMLA | wt | AA | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653569 | 4,636,645 | 4,060,593 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Malling 27 EMLA | wt | AB | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653570 | 4,607,874 | 3,386,999 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Malling 27 EMLA | wt | AB | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653571 | 5,767,919 | 4,926,562 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Malling 27 EMLA | wt | AB | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| GSM880655 | 6,533,221 | 2,750,672 | GEO | 0 | fruit | Golden delicious -- grafted on M.111 | wt | B | 1 | fruit (2-years-old plants -- 15 and 120 days after anthesis) -- control conditions |
| SRR1136652 | 8,149,553 | 2,025,865 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | C | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1136653 | 11,210,545 | 2,707,078 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | D | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1136654 | 6,077,708 | 1,663,152 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | E | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1136655 | 11,598,177 | 2,693,471 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | F | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1136656 | 11,761,320 | 2,537,411 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | G | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1136657 | 12,987,884 | 2,940,389 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | H | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1260325 | 8,489,484 | 4,230,603 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | I | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1260330 | 5,633,548 | 2,634,091 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | J | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1260335 | 6,783,247 | 3,302,624 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | K | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1260336 | 7,320,677 | 3,736,997 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | L | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1260339 | 6,260,204 | 3,445,946 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | M | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR1260346 | 6,723,911 | 3,459,269 | SRA | 0 | leaf | Golden Delicious -- grafted on MM.109 | wt | N | 1 | leaf (mature leaf) -- healthy or asymptomatic ASGV-infected unknown |
| SRR2182475 | 9,110,517 | 3,393,789 | SRA | 0 | leaf | Crimson Gala -- grafted on Geneva 30 | wt | O | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182488 | 12,484,410 | 3,592,220 | SRA | 0 | leaf | Crimson Gala -- grafted on Geneva 30 | wt | O | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182476 | 11,375,251 | 3,404,096 | SRA | 0 | leaf | Crimson Gala -- grafted on Geneva 30 | wt | P | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182489 | 10,605,744 | 2,878,085 | SRA | 0 | leaf | Crimson Gala -- grafted on Geneva 30 | wt | P | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182477 | 9,466,053 | 3,207,758 | SRA | 0 | leaf | Crimson Gala -- grafted on Geneva 30 | wt | Q | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182487 | 10,896,313 | 3,460,459 | SRA | 0 | leaf | Crimson Gala -- grafted on Geneva 30 | wt | Q | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182478 | 10,074,798 | 3,489,629 | SRA | 0 | leaf | Crimson Gala -- grafted on Malling 27 EMLA | wt | R | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182479 | 10,785,420 | 4,028,010 | SRA | 0 | leaf | Crimson Gala -- grafted on Malling 27 EMLA | wt | S | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR2182480 | 8,177,088 | 3,023,921 | SRA | 0 | leaf | Crimson Gala -- grafted on Malling 27 EMLA | wt | T | 1 | leaf (actively-growing leaf) -- control conditions |
| SRR413923 | 18,207,646 | 5,598,390 | SRA | 0 | leaf | Golden delicious -- grafted on M.111 | wt | U | 1 | leaf (2-years-old plants -- mixed stages) -- control conditions |
| SRR413924 | 16,118,314 | 4,428,764 | SRA | 0 | root | Golden delicious -- grafted on M.111 | wt | V | 1 | root (2-years-old plants -- young root) -- control conditions |
| SRR5448177 | 2,032,233 | 2,133,001 | SRA | 0 | vegetative bud | Golden delicious -- grafted on M.26 | wt | W | 1 | vegetative bud (16-years-old plants -- lateral buds from extension shoots) -- control conditions |
| SRR5448179 | 2,232,363 | 2,305,493 | SRA | 0 | floral bud | Golden delicious -- grafted on M.26 | wt | X | 1 | floral bud (16-years-old plants -- terminal buds from non-fruiting spurs) -- control conditions |
| SRR5448180 | 2,124,170 | 2,262,730 | SRA | 0 | floral bud | Golden delicious -- grafted on M.26 | wt | X | 1 | floral bud (16-years-old plants -- terminal buds from non-fruiting spurs) -- control conditions |
| SRR5448181 | 2,644,805 | 2,059,977 | SRA | 0 | floral bud | Golden delicious -- grafted on M.26 | wt | X | 1 | floral bud (16-years-old plants -- terminal buds from non-fruiting spurs) -- control conditions |
| SRX653560 | 4,999,794 | 4,191,049 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Budagovsky 9 | wt | Y | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653561 | 5,065,906 | 4,081,244 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Budagovsky 9 | wt | Y | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653562 | 4,158,841 | 3,235,849 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Budagovsky 9 | wt | Y | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653563 | 5,924,301 | 4,416,530 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Geneva 30 | wt | Z | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653564 | 7,973,466 | 6,097,418 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Geneva 30 | wt | Z | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |
| SRX653565 | 4,359,699 | 3,587,895 | SRA | 0 | shoot tip | Crimson Gala -- grafted on Geneva 30 | wt | Z | 1 | shoot tip (meristem -- stem and leaves but not including the first fully expanded leaf) -- control conditions |