het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Malus x domestica (Apple) genome build 3.0 (mdm-b3.0)

Version v3.0 of Malus x domestica cv. Golden Delicious from The Genome Database for Rosaceae

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mdm-b3.0r1-107Malus x domestica (Apple) 3.0Scaffold_lg0_300224:39920-40662+2,299,6735,081.91GGUAGUUUGACCGUGGAAUUsiRNA20ShortStack
mdm-b3.0r1-223Malus x domestica (Apple) 3.0Scaffold_lg0_300313:272972-272991+4801.06AAUAAGCAGCUAACCUGUGAsiRNA20ShortStack
mdm-b3.0r1-2469Malus x domestica (Apple) 3.0Scaffold_lg0_304566:1-87+3,0516.74CCGUGUUUCUCUGUAUAAAGmiR7122siRNA20ShortStack
mdm-b3.0r1-4391Malus x domestica (Apple) 3.0Scaffold_lg0_308242:1006-1151.7071.56UGAGUUUGGGUAACAGAGGUsiRNA20ShortStack
mdm-b3.0r1-4508Malus x domestica (Apple) 3.0Scaffold_lg0_308547:173398-173496-4370.97AAUCGAUCAAACAUUUACGAsiRNA20ShortStack
mdm-b3.0r1-4792Malus x domestica (Apple) 3.0Scaffold_lg0_309458:93773-93793-6341.40CAACCAAACCUACCUGGAAAsiRNA20ShortStack
mdm-b3.0r1-5076Malus x domestica (Apple) 3.0Scaffold_lg0_310269:490-511-2500.55UCUCCCCGGCAACGGCGCCAsiRNA20ShortStack
mdm-b3.0r1-8004Malus x domestica (Apple) 3.0Scaffold_lg0_313830:121776-121804+1,7973.97CCGUGUUUCUCUGUAUAAAGmiR7122siRNA20ShortStack
mdm-b3.0r1-9232Malus x domestica (Apple) 3.0Scaffold_lg0_314136:240159-240294+2840.63CAGAACUCCGAAGUUAAGCUsiRNA20ShortStack
mdm-b3.0r1-12988Malus x domestica (Apple) 3.0Scaffold_lg0_315041:3769-3917-2020.45AUCUAAUCCAACCAUAGUGAsiRNA20ShortStack
mdm-b3.0r1-13020Malus x domestica (Apple) 3.0Scaffold_lg0_315051:29903-29958.1340.30AUUAUCAAUAAUAUCGUGAUsiRNA20ShortStack
mdm-b3.0r1-13670Malus x domestica (Apple) 3.0Scaffold_lg0_315204:212-331+25,36956.06UAGCCAGGGAUGACUUGCCUmiR169siRNA20ShortStack
mdm-b3.0r1-14065Malus x domestica (Apple) 3.0Scaffold_lg0_315300:12262-12281+1170.26UUGAAUUGAAGUGCUUGAAUmiR846siRNA20ShortStack
mdm-b3.0r1-16031Malus x domestica (Apple) 3.0Scaffold_lg0_315813:3940-4100+3,4127.54UAGCCAGGGAUGACUUGCCUmiR169siRNA20ShortStack
mdm-b3.0r1-19668Malus x domestica (Apple) 3.0Scaffold_lg0_316889:4571-4592-1610.36AAGGAAGCUAUAAGUAAUGAsiRNA20ShortStack
mdm-b3.0r1-20842Malus x domestica (Apple) 3.0Scaffold_lg0_317299:754-883-4450.98AAGUUCAUCCAAACACCAUAmiR11011siRNA20ShortStack
mdm-b3.0r1-21359Malus x domestica (Apple) 3.0Scaffold_lg0_317495:132150-132204-3180.70GUUCCAAUUUUAUCGGAUGUsiRNA20ShortStack
mdm-b3.0r1-24894Malus x domestica (Apple) 3.0Scaffold_lg0_318705:13287-13306+1,0692.36GUCUUGAAUCAAAAUAAUUUsiRNA20ShortStack
mdm-b3.0r1-25130Malus x domestica (Apple) 3.0Scaffold_lg0_318785:3314-3391-1,2982.87GUUCCAAUUUUAUCGGAUGUsiRNA20ShortStack
mdm-b3.0r1-25147Malus x domestica (Apple) 3.0Scaffold_lg0_318793:6274-6296-36,02379.61CUUGGAUUGAAGGGAGCUCCmiR159siRNA20ShortStack
mdm-b3.0r1-26112Malus x domestica (Apple) 3.0Scaffold_lg0_319123:136355-136376+2640.58CAGCGAGAUCUUAGUUAUUGsiRNA20ShortStack
mdm-b3.0r1-27881Malus x domestica (Apple) 3.0Scaffold_lg0_319734:3988-4514-57,434126.92ACCUAGCUCUGAUACCAUGAmiR1511siRNA20ShortStack
mdm-b3.0r1-34434Malus x domestica (Apple) 3.0Scaffold_lg11_301904:2649177-2649198-3390.75GGUAGGUUGACCGUGGAAUUsiRNA20ShortStack
mdm-b3.0r1-35410Malus x domestica (Apple) 3.0Scaffold_lg11_306660:206185-206975.7,79917.24CCUGUUUAAUUACCGAUGCAsiRNA20ShortStack
mdm-b3.0r1-42232Malus x domestica (Apple) 3.0Scaffold_lg13_301776:530384-530490-7011.55UUAACGGAAUACUUAACACUsiRNA20ShortStack
mdm-b3.0r1-45373Malus x domestica (Apple) 3.0Scaffold_lg13_313430:99681-99706-100.02ACAUGCUUAGUCAAAACAUGsiRNA20ShortStack
mdm-b3.0r1-50410Malus x domestica (Apple) 3.0Scaffold_lg15_300511:67137-67326.4521.00UAAAGAAUGCACGAAGGACGsiRNA20ShortStack
mdm-b3.0r1-54058Malus x domestica (Apple) 3.0Scaffold_lg15_313292:334040-334538+1,634,4033,611.77UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
mdm-b3.0r1-58653Malus x domestica (Apple) 3.0Scaffold_lg16_313497:102749-102921-5,67512.54GUUUCCUCAAACACUUCAUUmiR395siRNA20ShortStack
mdm-b3.0r1-61052Malus x domestica (Apple) 3.0Scaffold_lg17_307499:597802-597837+8,56818.93UGACAGAAGAUAGAGAGCACmiR156siRNA20ShortStack
mdm-b3.0r1-62572Malus x domestica (Apple) 3.0Scaffold_lg17_313414:206801-207334+16,99137.55UAGCCAGGGAUGACUUGCCUmiR169siRNA20ShortStack
mdm-MIR169c-m1Malus x domestica (Apple) 3.0Scaffold_lg17_313414:207161-207342+8,26118.26UAGCCAGGGAUGACUUGCCUmiR169siRNA20miRBase21-BestBlastHit
mdm-MIR169d-m1Malus x domestica (Apple) 3.0Scaffold_lg17_313414:207161-207342+8,26118.26UAGCCAGGGAUGACUUGCCUmiR169siRNA20miRBase21-BestBlastHit
mdm-b3.0r1-66857Malus x domestica (Apple) 3.0Scaffold_lg1_314965:11894-12226+5,90313.05CUUGGAUUGAAGGGAGCUCCmiR159siRNA20ShortStack
mdm-b3.0r1-70354Malus x domestica (Apple) 3.0Scaffold_lg2_313293:51021-51181-6,92915.31UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
mdm-MIR477a-m3Malus x domestica (Apple) 3.0Scaffold_lg2_313697:103383-103405-10.00UUGAUUAAACCAAAUAUACCsiRNA20miRBase21-BestBlastHit
mdm-b3.0r1-77398Malus x domestica (Apple) 3.0Scaffold_lg4_306330:3855995-3856018+8,26018.25UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
mdm-b3.0r1-87641Malus x domestica (Apple) 3.0Scaffold_lg7_300794:360816-361055+72,811160.90CUUGGAUUGAAGGGAGCUCCmiR159siRNA20ShortStack
mdm-b3.0r1-92120Malus x domestica (Apple) 3.0Scaffold_lg8_300171:777091-777112+2330.52UCUCCCCGGCAACGGCGCCAsiRNA20ShortStack
mdm-b3.0r1-92691Malus x domestica (Apple) 3.0Scaffold_lg8_301376:618684-618898+3860.85CUUUUGUUUGUUCUGAAGCUsiRNA20ShortStack
mdm-b3.0r1-93486Malus x domestica (Apple) 3.0Scaffold_lg8_303254:598522-598625+4801.06AAGUUCAUCCAAACACCAUAmiR11011siRNA20ShortStack
mdm-b3.0r1-95464Malus x domestica (Apple) 3.0Scaffold_lg9_300191:1300826-1300848-3400.75ACUCCUUAACUAUGUCCCAGsiRNA20ShortStack
mdm-b3.0r1-95729Malus x domestica (Apple) 3.0Scaffold_lg9_300219:21006-21263.4120.91CAAUUUCAAGCAAAAUGGAUsiRNA20ShortStack