Data from Lunardon et al. (2020)

Genome and annotations summary

Nicotiana tabacum (Tobacco) genome build 0 (nta-b0)

Version v0 of Nicotiana tabacum cv. K326 from The Sol Genomics Network

Go to genome browser

Download genome assembly FASTA file

BLAST search

Small RNA Loci

Click links below to show sub-sets of annotations

	ShortStack	miRBase21-BestBlastHit	Tang_et_al_2012	Krasnikova_et_al_2009
MIRNA	145	82	0	0
nearMIRNA	148	13	0	0
siRNA20	44	0	0	0
siRNA21	1,241	12	1	1
siRNA22	2,311	8	0	0
siRNA23	100	2	0	0
siRNA24	38,046	10	0	0
OtherRNA	3,080	25	0	0
NotExpressed	0	37	0	0

Small RNA-seq data

Reference Set

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
tobacco_all_reference_set	135,615,060	64,777,411	none	1	mixed	mixed	mixed	refset1	1	merge of 14 libraries - reference set 1

Invidiual alignments (14)