het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Nicotiana tabacum (Tobacco) genome build 0 (nta-b0)

Version v0 of Nicotiana tabacum cv. K326 from The Sol Genomics Network

Locus type


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Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
nta-b0r1-114Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1002:339885-339918-4982.49UGUUAUGUAGAAGGAGAAUUAUAsiRNA23ShortStack
nta-b0r1-127Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS10020:67352-67681+77,966389.07UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-1163Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1045:69375-69492.640.32GACGAACUUCAGCUCUAGAGCUAsiRNA23ShortStack
nta-b0r1-3032Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS11227:20656-20812.2161.08ACGUACCGGAUUAAGUGAGAACCsiRNA23ShortStack
nta-b0r1-3485Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1141:798452-798578+5302.65UACCCCGGAGAGUAGAGAGGCUAsiRNA23ShortStack
nta-b0r1-3528Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS11412:537237-537405-4292.14AGUGAAUGAAGCGGUAGACAAGUsiRNA23ShortStack
nta-b0r1-3637Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS11465:349190-349278-2511.25UAUUCGACUGUAUUCACGGCGUAmiR6152siRNA23ShortStack
nta-b0r1-5095Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS12099:8487-8510-1480.74AGAAGUUCGUCUACAGACGCUUAsiRNA23ShortStack
nta-b0r1-5201Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS12143:538832-538965+2,36011.78GCGGAAGAUCCUGAAUUUGAGACsiRNA23ShortStack
nta-b0r1-5263Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS12168:226045-226175-1,2026.00AAUGGACUUUUAGUGACGGAUUAsiRNA23ShortStack
nta-b0r1-5514Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS12293:223821-223952.3031.51UCGAGAGUCUCCUGAAAACAsiRNA23ShortStack
nta-b0r1-5731Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS12395:215729-215839-3501.75UACGGUACUUAGACAUUUCGGUUsiRNA23ShortStack
nta-b0r1-7144Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS12884:74622-74653+770.38GUACCGGAUUAAGUGAGAACCUCsiRNA23ShortStack
nta-b0r1-7404Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS13005:590529-590706-1,1945.96GUCUGGGUGGUGUAGUUGGUUAUsiRNA23ShortStack
nta-b0r1-7555Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1308:675187-675286.2091.04AUCCGGAGCUCGAACCCGAGACCsiRNA23ShortStack
nta-b0r1-8369Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS13444:22719-22898+3161.58AGGACAUGGCCACGGCAGGACAAsiRNA23ShortStack
nta-b0r1-8787Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS13596:35999-36031+1410.70GCGGAUGUAGCUCAGUUGGUAGAsiRNA23ShortStack
nta-b0r1-9686Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14140:239-426+56,403281.46UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-9907Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14274:106146-106185+2391.19AAGGACGGUCGAAAGGGGUCAUUsiRNA23ShortStack
nta-b0r1-9990Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS143175:6400-6669+6393.19UCUGGACAACUCUGAUUUUAGGCsiRNA23ShortStack
nta-MIR6158a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14347:22111-22268-10.01GAUUUGUACGAAGGGCAUGGAGAmiR6158siRNA23miRBase21-BestBlastHit
nta-b0r1-10124Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14400:35343-35428+1260.63GGUAAGGCUGCAUACAAUAGACAsiRNA23ShortStack
nta-b0r1-10134Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14402:43814-43931-2371.18UGCCAUCGAUUGUUGCGGGCAACsiRNA23ShortStack
nta-b0r1-10363Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14524:41450-41472+2741.37AAAAGAAAUGAGAUACUCACAAAsiRNA23ShortStack
nta-b0r1-10674Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14708:734-925.2721.36UCAAGUAACCGAUCGGACGGAUAsiRNA23ShortStack
nta-b0r1-11484Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS15157:45506-45668.4282.14AUACCUAGGACUCGAACCCGAAAsiRNA23ShortStack
nta-b0r1-13313Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS16337:50485-51200+8254.12AGGCACUAGUAGAAAUAUCAUUCsiRNA23ShortStack
nta-b0r1-13579Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS16478:16697-17136-4752.37UUUGGAAACUUUGGAAAUGGUAUsiRNA23ShortStack
nta-b0r1-13776Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1656:34052-34237-4262.13AAUAAACUUUAACUGCUCGGACAsiRNA23ShortStack
nta-b0r1-14836Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS17261:271700-272041+23,619117.86UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-14997Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS17353:219303-219426.2,18510.90UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-15625Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS17681:15622-15780+3081.54AUGAGAGUUUUAGAGCAACGGUAsiRNA23ShortStack
nta-b0r1-15733Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS17740:339051-339417-60,104299.93UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-16434Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS17987:106189-106436.4642.32AAUUGCAUACCAGGAUCUUGAACsiRNA23ShortStack
nta-b0r1-17163Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18148:49917-50063+30,683153.12GCUGAGGGCACGUCUGCCUGGGCsiRNA23ShortStack
nta-b0r1-17482Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18226:175702-175916.4822.41AUUAGUCGGGCCCCAAUGUGAGUsiRNA23ShortStack
nta-b0r1-17875Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18379:180362-180384-1350.67UGGACAAAAAUGAAGAAGGGGUAsiRNA23ShortStack
nta-b0r1-18622Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS185143:3882-4000+2271.13CAAGAGAUUGUUUUCACGGCUUAsiRNA23ShortStack
nta-b0r1-19176Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18680:4036-4383+79,556397.00UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-19873Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18996:248116-248181+1,6928.44UAAGGCUGCGUACAAUAGACCCAsiRNA23ShortStack
nta-b0r1-20278Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19200:130949-130980+1220.61AAAUGAACACCGAACGCCGGCUAsiRNA23ShortStack
nta-b0r1-20434Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19267:138060-138199+7323.65UAACUGUGUAACUCUAAGGGCAUsiRNA23ShortStack
nta-b0r1-20709Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19417:132294-132486-4712.35AAAUGGACUUUUAGUGACGGAUAsiRNA23ShortStack
nta-b0r1-20782Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19472:83976-84095.1700.85GGGAUUAUACUGGGUCGUUGUUAsiRNA23ShortStack
nta-b0r1-20987Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19557:360158-360214-1480.74AAGGAGUAGAGAGGCUGUUUUCAsiRNA23ShortStack
nta-b0r1-21154Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19636:56769-57106+6603.29UGGACUGCCCUGAAUUUUUAGGCsiRNA23ShortStack
nta-b0r1-21724Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS198962:1-79.1730.86AGGAUCAAAAUCUUAGUCUGACAsiRNA23ShortStack
nta-b0r1-21780Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19913:9673-9718-2811.40AUCUAGUAUUGUAGAGUUAGGUUsiRNA23ShortStack
nta-b0r1-22633Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS20300:98064-98134.2051.02AGAAUGCGUACAGUAGACCCUUAsiRNA23ShortStack
nta-b0r1-23429Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS2117:211842-211874+3,76618.79GUCUGGGUGGUGUAGUUGGUUAUsiRNA23ShortStack
nta-b0r1-23892Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS2218:3709-3743+2601.30AGAAGUUCGUCUACAGACGCUUAsiRNA23ShortStack
nta-b0r1-24027Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS225:966689-966725+10,66953.24GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
nta-b0r1-24098Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS227144:248-458.1,9389.67AUGGACAGAAUUAAUUAUACCsiRNA23ShortStack
nta-b0r1-24269Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS2310:263245-263587.1,3756.86AAUCCAGGACAAAACUUCAGCUUsiRNA23ShortStack
nta-b0r1-24286Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS2313:607797-607892+4992.49AUCGAGAAUGUAGUGUCUGAAUUsiRNA23ShortStack
nta-b0r1-24703Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS241924:513-548-880.44UCCAGAACUCAUGCUUUUAGACCsiRNA23ShortStack
nta-b0r1-25182Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS257721:9757-9780-1130.56CGAGAUUGUUAUAGAGAGGUUUAsiRNA23ShortStack
nta-b0r1-25234Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS2593:10801-10916+6073.03AGAGAGACUGUUUACGAAAGACUsiRNA23ShortStack
nta-b0r1-25544Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS268030:3059-3369.9534.76AUUAGUCGGGCCCCAAUGUGAAUsiRNA23ShortStack
nta-b0r1-25678Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS272358:471-533+1110.55UUGUUUGUUGUAGACUUCAGAGAsiRNA23ShortStack
nta-b0r1-26121Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS284420:1288-1380+2691.34CGGACAAGAAAACGCGAGAGGCGsiRNA23ShortStack
nta-b0r1-26517Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS293167:3505-3815+88,523441.75UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-27036Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS3064:41332-41397-33,644167.89GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
nta-b0r1-27426Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS3165:95478-95556+64,429321.51GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
nta-b0r1-28280Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS337508:159-224+2651.32UUGCGUCGUUGUGCCUGGGCUGUsiRNA23ShortStack
nta-b0r1-28616Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS347082:239-263+1470.73AGGACAUGGCCACGGCAGGACAAsiRNA23ShortStack
nta-b0r1-29922Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS3778:339530-339557-7203.59AAAAGAAAUGAGAUACUCACAAAsiRNA23ShortStack
nta-b0r1-30236Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS38884:38-133+4822.41CGGACAAGAAAACGCGAGAGGCGsiRNA23ShortStack
nta-b0r1-30448Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS39335:1283-1318-1,0585.28UGGUGAAAAGAACAAGAUGAUGCUsiRNA23ShortStack
nta-b0r1-30562Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS3969:338-373-800.40CCUGACCCAAGUAAGUAGACAUAsiRNA23ShortStack
nta-b0r1-30923Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS4146:71978-72061+5642.81AAGGAGUAGAGAGACUGUUUCCAsiRNA23ShortStack
nta-b0r1-31041Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS41942:51403-51494+2011.00GGGAUUAUACUGGGUCGUUGUUAsiRNA23ShortStack
nta-b0r1-31653Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS4500:100155-100210-1,4527.25ACUGUCGAGACCAAUGAAGAsiRNA23ShortStack
nta-b0r1-31706Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS453:449303-449728+86,343430.87UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-32074Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS4698:139225-139266.1630.81UUGAACUGAGAACUGAGAAGUCAsiRNA23ShortStack
nta-b0r1-32141Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS473:487060-487147-9324.65UAUGAACCAGAAAUCGAUAGGCUsiRNA23ShortStack
nta-b0r1-33143Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS50744:148-175-3661.83AGACCAAGCGUAGUUCGUGCAAUsiRNA23ShortStack
nta-b0r1-33186Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS5093:5275-5314-1,5647.81UGGACCCGAAGAGACGCUUUCCAsiRNA23ShortStack
nta-b0r1-33828Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS5427:143658-143726-2091.04AAGGCUGCGUACAAUAGACCCUAsiRNA23ShortStack
nta-b0r1-33843Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS543:324303-324622.3761.88AGAGAUGGACACAAGAGAUCUGUsiRNA23ShortStack
nta-b0r1-33944Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS5480:17938-18210+6633.31AAGGGCAGAGACUGUAGCGGCUAsiRNA23ShortStack
nta-b0r1-34004Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS551:267732-267934.2,06510.31CCCGAGACCUCUGAUUAAGAAUAsiRNA23ShortStack
nta-b0r1-34417Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS568:55494-55523.2391.19UCCGAUCUGAAUUUAUCUCAAGCsiRNA23ShortStack
nta-b0r1-35237Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS6032:87626-88033-4,79223.91UACCUGUUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-36043Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS639:852904-852995.2031.01AGUGUACGUAGAUCUUAACCCUAsiRNA23ShortStack
nta-b0r1-36438Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS6558:78304-78422-2431.21ACAGACUGCAUCAGAGAUACACAsiRNA23ShortStack
nta-b0r1-36486Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS65796:576-605-3691.84AUGAACAUUCCUAGACUCUGAUAsiRNA23ShortStack
nta-b0r1-37261Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS69225:400-618-81,695407.68UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-37630Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7064:259117-259318.2871.43AAGGUCUGCGUACACACUACCCAsiRNA23ShortStack
nta-b0r1-38313Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7331:1129857-1129880.1390.69GAUAAGGCUGUGUACAAUAGACUsiRNA23ShortStack
nta-b0r1-38451Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7392:99730-99828.9,67848.30UACCUGGUUGAUUCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-39065Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS764:146905-146952+3891.94AGAAGUUCGUCUACAGACGCUUAsiRNA23ShortStack
nta-b0r1-39380Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7750:230660-230753.4172.08AAGGUCUGCGUACACACUACCCAsiRNA23ShortStack
nta-b0r1-39554Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS784:491543-491686-8994.49AUCCUCGGAUAGAAAUCGUCUAAsiRNA23ShortStack
nta-b0r1-39598Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7864:67482-67831+4792.39GUGAACACUAGAUCAUGAGACGCsiRNA23ShortStack
nta-b0r1-40452Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS824:34311-34400-2261.13AGACUUUUGAACUUGUGGUGGUAsiRNA23ShortStack
nta-b0r1-41704Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS8675:300737-300861+6793.39UCAGCAUUCUAGUAGACGGGCCAsiRNA23ShortStack
nta-MIR6152a-m3Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS8875:23808-23911+20.01CGUGGGAUUACAGUUGGACAGAUsiRNA23miRBase21-BestBlastHit
nta-b0r1-42748Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS9030:62481-62693-1,3126.55GUUGCUUCUUAUGGUGAACUCUCsiRNA23ShortStack
nta-b0r1-43921Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS944:273038-273429+18,71593.39UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
nta-b0r1-44067Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS9504:98492-98647-4,05520.24UCCCAGACAGUGGAUUUUCGGGCsiRNA23ShortStack
nta-b0r1-44541Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS9698:20828-20942+1,7748.85AAGUCAAACUGUAUGAGGGGCUUsiRNA23ShortStack