het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Cuscuta campestris (Field Dodder) genome build 0.1 (ccm-b0.1)

Version 0.1 assembly of Cuscuta campestris isolate 'doddi' described in Shahid et al. 2018

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ccm-b0.1r1-68992Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig10107:16712-16827+450.55UCCCAAAUGUAUACAAAGCUsiRNA20ShortStack
ccm-b0.1r1-136191Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig122303:700-939-1081.31CGUGGACCUUUCAAGCUUCAsiRNA20ShortStack
ccm-b0.1r1-63992Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig251478:495-910-4695.71CGCAAGUCUCCUUGGCUAUCsiRNA20ShortStack
ccm-b0.1r1-134354Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig27064:1279-1468+4,14050.36CCUCAUGAUGUAUACUGAUCsiRNA20ShortStack
ccm-b0.1r1-22228Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig271478:17391-17545+530.65UUUCCUGUUUCAAAAAAGACsiRNA20ShortStack
ccm-b0.1r1-31789Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig319610:458-501+680.83UGGCUGUGAUGAUCGAAACCsiRNA20ShortStack
ccm-b0.1r1-24515Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig3777:62943-63162+520.63UUUGGAUUGAAGGCACCCCUsiRNA20ShortStack
ccm-b0.1r1-36780Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig4859:30250-30493+690.84CGCAAGUCUCCUUGGCUAUCsiRNA20ShortStack
ccm-b0.1r1-36783Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig4859:36215-36805+1,19314.51CGCAAGUCUCCUUGGCUACCsiRNA20ShortStack
ccm-b0.1r1-134029Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig573137:637-975+600.73UGGGAUGAUGAUUCUGACUGsiRNA20ShortStack
ccm-b0.1r1-34820Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig6053:27721-28137.94611.51UGACAGAAGAGAGUGAGCAUmiR156siRNA20ShortStack
ccm-b0.1r1-38647Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig752271:5461-5495+1892.30GUGUGAAUUGCAGAAUCCCAsiRNA20ShortStack
ccm-b0.1r1-66670Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig90785:21714-22489-6,05673.67UUUGGAUAUUACGACACAUUsiRNA20ShortStack