het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Cuscuta campestris (Field Dodder) genome build 0.1 (ccm-b0.1)

Version 0.1 assembly of Cuscuta campestris isolate 'doddi' described in Shahid et al. 2018

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ccm-b0.1r1-57458Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig100820:6817-7112-1181.44AUAGAGUCUGGAUUGAAUACACCCnearMIRNAShortStack
ccm-b0.1r1-82519Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig102276:18669-18888+460.56AAGUAAGAUGUGAUGGAUAGAUCnearMIRNAShortStack
ccm-b0.1r1-58964Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig11266:5552-5840-2332.83AGAAUGGACGAGAACUUAAAAUCUnearMIRNAShortStack
ccm-b0.1r1-29577Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig13538:46554-46671-5006.08UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
ccm-b0.1r1-131303Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig13553:3062-3220+2923.55AUAUAAGGUCUGUUUAGAAAUAGCnearMIRNAShortStack
ccm-b0.1r1-67504Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig137951:740-963+2883.50AAAUAGGACUAAAACAUAAUGACCnearMIRNAShortStack
ccm-b0.1r1-87181Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig139596:1949-2121+4135.02UUGACAGAAGAGAGAGAGCACmiR156nearMIRNAShortStack
ccm-b0.1r1-98055Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig141694:4355-4531+570.69AGGGGAAUUUGAGAUUUUGACACUnearMIRNAShortStack
ccm-b0.1r1-132258Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig143170:3756-3918+1842.24AGGGGCUGGUUCCUGUGAGAAUGCnearMIRNAShortStack
ccm-b0.1r1-125109Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig14569:50602-50734+4,06749.47UAAGUCGUUCAUGUGCUUCGUnearMIRNAShortStack
ccm-b0.1r1-70116Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig149057:82-116-590.72UCUGGCCCUUAUGCACCCCUGnearMIRNAShortStack
ccm-b0.1r1-65368Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig17744:47661-47756+3894.73UUUGACAUAAUUUCUGGUCCUnearMIRNAShortStack
ccm-b0.1r1-128569Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig190077:1020-1100-1862.26UUCCACAGCUUUCUUGAACUUCmiR396nearMIRNAShortStack
ccm-b0.1r1-135272Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig19400:24937-25212+710.86AGAGAAAAGUACUAAAAUAGGAUUnearMIRNAShortStack
ccm-b0.1r1-47467Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig194128:4036-4118-800.97AUGUGAUUGUCAUUUGUGGAGACAnearMIRNAShortStack
ccm-b0.1r1-68069Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig199121:15951-16071-1121.36AAUGUCUACAUACGGGAACAAUGUnearMIRNAShortStack
ccm-b0.1r1-61447Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig21602:969-1082-490.60AAAUUGUAGCAUCUUUUGAACGUGnearMIRNAShortStack
ccm-b0.1r1-120764Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig223463:11592-11797+530.65ACCGAAAUGUUUGUGACUCUAGCAnearMIRNAShortStack
ccm-b0.1r1-98325Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig228090:7150-7276+440.54AUAAAACCGUCUGUAUUGUCAUGCnearMIRNAShortStack
ccm-b0.1r1-133569Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig2290:62514-62740+1141.39UGCAUUUACACCUGCACCUGCnearMIRNAShortStack
ccm-b0.1r1-52068Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig25204:16293-16572-560.68GUCUGUGUGAAGCAUGAAUGCACCnearMIRNAShortStack
ccm-b0.1r1-16147Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig2543:17250-17281-1091.33GAUAGCCGUUUGCAAGACCUGnearMIRNAShortStack
ccm-b0.1r1-136240Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig259017:704-992+851.03AACGAUCUUUUUGGGACGGAAGGAnearMIRNAShortStack
ccm-b0.1r1-25992Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig259749:3150-3243-3073.74UUUGACAUGAUUUCUGGUCCUnearMIRNAShortStack
ccm-b0.1r1-109290Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig260337:1-242+1271.55ACCAUGUGGUAGCACUCUAGCAUUnearMIRNAShortStack
ccm-b0.1r1-31527Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig273902:260-520-1331.62GAGAACCGGCCGGUCGGACUGGUCnearMIRNAShortStack
ccm-b0.1r1-19172Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig273963:8027-8228+1832.23ACCGCUAGUGGCAUCGUUGGCCGGnearMIRNAShortStack
ccm-b0.1r1-115494Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig305142:6595-6816-470.57AUAUAUCCGAUGUGUAAACUUUACnearMIRNAShortStack
ccm-b0.1r1-134179Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig325556:11703-11824-450.55UGAUUAGUUGUGGCACAAAGnearMIRNAShortStack
ccm-b0.1r1-22947Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig338008:6681-6809+660.80AUGUAAUAGUAGAUAAUUGAAGGUnearMIRNAShortStack
ccm-b0.1r1-104274Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig33904:57-177+610.74AAAAAGAUCAAAACUUUAGAAACUnearMIRNAShortStack
ccm-b0.1r1-71954Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig353261:6018-6281+1101.34UGUUUGUGCAAGACUGUGGUGnearMIRNAShortStack
ccm-b0.1r1-108687Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig39330:7042-7182-1181.44AAGUGUCUGUAUUUCUUGGUGUACnearMIRNAShortStack
ccm-b0.1r1-107836Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig433840:1900-2098+1,16514.17UAUUCUGGUGCAGCGUAACCCUGnearMIRNAShortStack
ccm-b0.1r1-117348Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig434083:6273-6536-1081.31AUUGGUUUGUGAUUACAAAGGUCUnearMIRNAShortStack
ccm-b0.1r1-137584Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig440206:3511-3676-440.54AAAACUUGUAGAACGAAGCGGnearMIRNAShortStack
ccm-b0.1r1-41305Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig441004:1661-1933-1501.83AACGAUCUUUUUGGGACGAGGGGAnearMIRNAShortStack
ccm-b0.1r1-87520Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig462410:7694-7775-570.69CGGUCUAGGUCAUACUUUGUGUCnearMIRNAShortStack
ccm-b0.1r1-89291Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig46804:3069-3201+500.61UUGUUUGUGACUCUAGCAUUACAnearMIRNAShortStack
ccm-b0.1r1-54522Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig4726:41892-42061-1782.17AUCUGUAUUUAUCUGUGUUUGCCUnearMIRNAShortStack
ccm-b0.1r1-21633Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig499280:2341-2590-881.07ACCGAGAAGAUCAUUAUAGGACGGnearMIRNAShortStack
ccm-b0.1r1-24972Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig591277:2405-2675-1141.39CACGUGCUCCCCUUCUCCAACmiR164nearMIRNAShortStack
ccm-b0.1r1-22782Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig597946:2455-2719-1611.96ACGAGAAUUUUAUUGUUGGACGGAnearMIRNAShortStack
ccm-b0.1r1-107851Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig5985:6281-6537-1331.62GGGUCUGUAAGACACUUAGUGUGCnearMIRNAShortStack
ccm-b0.1r1-93455Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig635707:490-612+510.62AUUGUUUGAGCUUGUCUAUGCnearMIRNAShortStack
ccm-b0.1r1-73268Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig685422:1269-1499+2643.21UACAUCUUUUUCCUACGAGCUUnearMIRNAShortStack
ccm-b0.1r1-40472Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig701954:1512-1720+620.75AAUUGAGCUGGGAGCUACUGACCUnearMIRNAShortStack
ccm-b0.1r1-24370Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig740530:177-426-460.56AUUGAAUCUGAUCUAGUCUAAUCUnearMIRNAShortStack
ccm-b0.1r1-19545Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig78816:1193-1362+610.74UCUGGUCUGAUCCAAUCUGAUnearMIRNAShortStack
ccm-b0.1r1-112692Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig83936:1985-2210-680.83AAAUACGACUUAAGAAUGACCAGUnearMIRNAShortStack
ccm-b0.1r1-80683Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig91918:28275-28414+2102.56CUAAAUGUAACAUGUUGUUCCCnearMIRNAShortStack