| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| ccm-b0.1r1-98974 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig102942:702-808 | + | 171 | 2.08 | GGAUGAGAAACCUAGGAAGAC | | MIRNA | ShortStack |
| ccm-b0.1r1-33423 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig10515:32498-32589 | + | 300 | 3.65 | UUCAUGAGUGGAAGAAAUUAUG | | MIRNA | ShortStack |
| ccm-b0.1r1-112072 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig105567:11650-11883 | + | 190 | 2.31 | UCCGUGUUUGUCUGUGUGAAG | | MIRNA | ShortStack |
| ccm-b0.1r1-119077 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig106526:2853-2982 | + | 54,343 | 661.06 | AGGAAACAUAUUGUGGCUCGGC | | MIRNA | ShortStack |
| ccm-MIR12487 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig106526:2853-2982 | + | 54,343 | 661.06 | AGGAAACAUAUUGUGGCUCGGC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-113044 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig111971:13996-14291 | + | 263 | 3.20 | CACCGAUAGUGAAUGGUGGCUU | | MIRNA | ShortStack |
| ccm-b0.1r1-60204 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig114736:3597-3720 | + | 1,658 | 20.17 | UUGCUAGAAUAUGAAGAGGUU | | MIRNA | ShortStack |
| ccm-MIR12475 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig114736:3597-3720 | + | 1,658 | 20.17 | UUGCUAGAAUAUGAAGAGGUU | | MIRNA | Shahid_et_al_2018 |
| ccm-MIR12492 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig115217:5964-6242 | - | 17,378 | 211.40 | CGUCAUUGGAAUGGGAUUGGAU | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-48601 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig12119:43506-43696 | + | 7,797 | 94.85 | CCGGACCAGGCUUCAUUCCUC | | MIRNA | ShortStack |
| ccm-MIR12490 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig122202:87-299 | + | 143,082 | 1,740.52 | CACGAAUAAAGAAAGGCGACUU | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-59525 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig124317:553-675 | - | 398 | 4.84 | UCUGCAUGUAUUCGUACACCA | | MIRNA | ShortStack |
| ccm-MIR12480 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig127272:2265-2551 | + | 6,788 | 82.57 | UGUCCUCUCCUCCGUAUAGGUA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-41953 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig130474:10194-10313 | - | 100 | 1.22 | UUCCUGUGUACUGUAUUUCUUC | | MIRNA | ShortStack |
| ccm-b0.1r1-62571 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig132675:981-1201 | - | 18,501 | 225.06 | UCCAAAGGGAUCGCAUUGCUC | | MIRNA | ShortStack |
| ccm-MIR12483 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig134057:54735-54847 | + | 8,664 | 105.39 | AUAUGGAAGAUUGACUAGGUCC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-98797 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig134057:54735-54851 | + | 8,664 | 105.39 | AUAUGGAAGAUUGACUAGGUCC | | MIRNA | ShortStack |
| ccm-b0.1r1-29575 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig13538:40993-41158 | - | 793 | 9.65 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ccm-b0.1r1-29579 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig13538:59395-59497 | - | 5,389 | 65.56 | GCUCACUCUCUAUCUGUCAUC | miR156 | MIRNA | ShortStack |
| ccm-b0.1r1-50205 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig137591:9233-9407 | + | 188 | 2.29 | CCACUCGGCAGCCACUGACGG | | MIRNA | ShortStack |
| ccm-MIR12482 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig14346:21003-21207 | + | 1,985 | 24.15 | UUAGGACAAACAUUUGAGAGAC | | MIRNA | Shahid_et_al_2018 |
| ccm-MIR12489 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig14569:48395-48618 | + | 6,040 | 73.47 | GUGAAACUUGGGGGUCUCGUG | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-125106 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig14569:48395-48635 | + | 6,042 | 73.50 | GUGAAACUUGGGGGUCUCGUG | | MIRNA | ShortStack |
| ccm-MIR12485 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig15124:36824-36914 | + | 1,098 | 13.36 | CUGUGUAGGUAAUUUAACCCUC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-47734 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig151938:12233-12437 | + | 389 | 4.73 | AAAUAGUAGCAGUUCUGAAUU | | MIRNA | ShortStack |
| ccm-b0.1r1-20240 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig157571:35-277 | - | 178 | 2.17 | GUGUCUGUAUUAACCUUGAUGUGC | | MIRNA | ShortStack |
| ccm-b0.1r1-110155 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig16347:7850-8000 | - | 7,249 | 88.18 | UAAGUCGUUCAUGUGCUUCGC | | MIRNA | ShortStack |
| ccm-b0.1r1-70525 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig175012:1574-1700 | - | 2,935 | 35.70 | AGAAGUGGAAAUCCUUGAGU | | MIRNA | ShortStack |
| ccm-b0.1r1-27966 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig17784:12868-12965 | - | 525 | 6.39 | GCGUAUGUGGAGCCAAGCAUG | | MIRNA | ShortStack |
| ccm-b0.1r1-87736 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig181774:6280-6454 | + | 1,586 | 19.29 | UUACCUUUUAAUUUGAACCUU | | MIRNA | ShortStack |
| ccm-b0.1r1-96870 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig186469:2019-2156 | - | 4,621 | 56.21 | UGAUGGAAUGAAGAUGCCGAGU | | MIRNA | ShortStack |
| ccm-MIR12464 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig186469:8369-8508 | - | 4,467 | 54.34 | GAUGUUGAGAUUGAAGUGGUG | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-96873 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig186469:8369-8508 | - | 4,467 | 54.34 | GAUGUUGAGAUUGAAGUGGUG | | MIRNA | ShortStack |
| ccm-b0.1r1-98024 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig187649:7486-7783 | - | 222,606 | 2,707.89 | UGUACCAUGAUUUGUAGACGAG | | MIRNA | ShortStack |
| ccm-MIR12497a | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig187649:7556-7767 | - | 222,602 | 2,707.84 | UGUACCAUGAUUUGUAGACGAG | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-88622 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig19595:8961-9108 | + | 27,583 | 335.53 | UUUGCAUAAAUUCGUAGACUAG | | MIRNA | ShortStack |
| ccm-MIR12463b | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig19595:8961-9108 | + | 27,583 | 335.53 | UUUGCAUAAAUUCGUAGACUAG | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-82242 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig198036:689-816 | + | 64 | 0.78 | UAGAAUAACACCAACUUUGACAGC | | MIRNA | ShortStack |
| ccm-MIR12469a | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig204051:37451-37583 | - | 95,675 | 1,163.84 | CAGCUUGAAAUGUAGUAUCCU | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-131500 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig204051:37451-37583 | - | 95,675 | 1,163.84 | CAGCUUGAAAUGUAGUAUCCU | | MIRNA | ShortStack |
| ccm-b0.1r1-78469 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig211623:4738-4964 | + | 6,116 | 74.40 | UCUUGCUGAUGUUUGGGACGAC | | MIRNA | ShortStack |
| ccm-b0.1r1-125996 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig215394:3039-3177 | - | 605 | 7.36 | CAGGAGCUAUGUAUGCAGGGA | | MIRNA | ShortStack |
| ccm-MIR12467 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig215394:3060-3177 | - | 604 | 7.35 | CAGGAGCUAUGUAUGCAGGGA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-127274 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig22099:57216-57368 | + | 124 | 1.51 | CACGUGCUCCCCUUCUCCAAC | miR164 | MIRNA | ShortStack |
| ccm-b0.1r1-24183 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig224029:43579-43735 | - | 1,212 | 14.74 | UGAAGCUGCCAGCAUGAUCUU | miR167 | MIRNA | ShortStack |
| ccm-b0.1r1-105396 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig224127:3913-4063 | - | 55 | 0.67 | UGCAUUUACACCUGCACCUAC | | MIRNA | ShortStack |
| ccm-b0.1r1-120926 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig22699:1081-1206 | - | 5,205 | 63.32 | UAGAGCGGAAAGGAUCGUCCAC | | MIRNA | ShortStack |
| ccm-MIR12488 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig22699:1096-1206 | - | 5,205 | 63.32 | UAGAGCGGAAAGGAUCGUCCAC | | MIRNA | Shahid_et_al_2018 |
| ccm-MIR12468 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig235364:2281-2515 | + | 1,150 | 13.99 | GAGAUUGCUGAAAAAGAAGAA | | MIRNA | Shahid_et_al_2018 |
| ccm-MIR12472 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig236501:1421-1663 | - | 2,517 | 30.62 | UUGGCAAGUAAUUUUGAGGAU | | MIRNA | Shahid_et_al_2018 |
| ccm-MIR12470 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig2385:55848-55969 | - | 3,579 | 43.54 | GUAAAGGACAAUACAAGUGCU | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-113880 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig242761:5588-5730 | + | 221 | 2.69 | UUGAAUGAGUGCUUGAAAGCC | | MIRNA | ShortStack |
| ccm-b0.1r1-75365 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig25038:35790-35950 | - | 11,824 | 143.83 | AAGUGGUGGAAAAGCUCGAGU | | MIRNA | ShortStack |
| ccm-b0.1r1-125199 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig262405:8906-9062 | - | 5,299 | 64.46 | GAGUGACGAGAAAGUGGCGUA | | MIRNA | ShortStack |
| ccm-MIR12466 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig262405:8916-9065 | - | 5,299 | 64.46 | GAGUGACGAGAAAGUGGCGUA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-23328 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig269937:33242-33406 | - | 338 | 4.11 | GAAAACAUAUUGUUGCUCGAC | | MIRNA | ShortStack |
| ccm-b0.1r1-73279 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig27097:9425-9690 | - | 7,408 | 90.12 | CCCGGACACUUUGCAAGGAAA | | MIRNA | ShortStack |
| ccm-MIR12477 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig27097:9538-9668 | - | 7,404 | 90.07 | CCCGGACACUUUGCAAGGAAA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-98840 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig27622:7698-7852 | + | 29,367 | 357.24 | AGUGUGCGAGUCAUGGAACAAC | | MIRNA | ShortStack |
| ccm-b0.1r1-42677 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig27666:33775-33900 | - | 8,575 | 104.31 | GCUCAGGGGCCGAGAUGCAUG | | MIRNA | ShortStack |
| ccm-MIR12496 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig27666:33785-33900 | - | 8,575 | 104.31 | GCUCAGGGGCCGAGAUGCAUG | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-99684 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig27979:463-736 | - | 8,432 | 102.57 | UCUUGGUGAUGUUUGGGACGAC | | MIRNA | ShortStack |
| ccm-MIR12465b | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig27979:474-687 | - | 8,431 | 102.56 | UCUUGGUGAUGUUUGGGACGAC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-94060 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig279821:500-651 | + | 412 | 5.01 | GCCUGUUUCCCCUAAUGACGCC | | MIRNA | ShortStack |
| ccm-b0.1r1-35077 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig284412:32661-32851 | - | 338 | 4.11 | AGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | ShortStack |
| ccm-b0.1r1-67916 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig29992:834-1109 | - | 855 | 10.40 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | ShortStack |
| ccm-b0.1r1-21930 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig30209:75623-75878 | - | 2,011 | 24.46 | CCCGCUUUGCAUCAACUGAAU | | MIRNA | ShortStack |
| ccm-b0.1r1-45141 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig30247:16758-16886 | - | 6,602 | 80.31 | UGAUGGAAUGAAGAUGCGGAGUA | | MIRNA | ShortStack |
| ccm-b0.1r1-121765 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig30783:17263-17379 | + | 3,399 | 41.35 | UCUGUCCUCUUCGCCGUUCAUC | | MIRNA | ShortStack |
| ccm-b0.1r1-92558 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig308345:55876-55967 | - | 48 | 0.58 | UGUGUUCUCAGGUCGCCCCUG | miR398 | MIRNA | ShortStack |
| ccm-b0.1r1-90918 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig31971:3676-3905 | - | 439 | 5.34 | AAGCCAAGGAUGAAUUGCCGU | | MIRNA | ShortStack |
| ccm-MIR12465a | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig331847:3772-3941 | - | 2,570 | 31.26 | UUCUUACUAAUAUUAGGGACU | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-37550 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig338037:1909-2149 | + | 2,266 | 27.57 | UUAUCUUUGUAGUCUUGCCAAG | | MIRNA | ShortStack |
| ccm-MIR12493 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig338037:1946-2149 | + | 2,265 | 27.55 | UUAUCUUUGUAGUCUUGCCAAG | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-17964 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig345156:5107-5207 | + | 319 | 3.88 | CAGGAAGAAAGAAAAUGUAGA | | MIRNA | ShortStack |
| ccm-b0.1r1-69546 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig3613:13367-13654 | - | 457 | 5.56 | ACAUCGAUGAGAUGAUUCGGC | | MIRNA | ShortStack |
| ccm-b0.1r1-105679 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig362351:1813-2026 | - | 96 | 1.17 | CAGGAAAAUCUGGAUGCUGGC | | MIRNA | ShortStack |
| ccm-b0.1r1-19047 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig37211:2663-2814 | - | 87 | 1.06 | GAUGGGACUGGUGUAUAUAAAC | | MIRNA | ShortStack |
| ccm-b0.1r1-112333 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig37225:58221-58348 | + | 37,265 | 453.31 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | ShortStack |
| ccm-MIR12495 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig373329:2643-2780 | + | 4,313 | 52.47 | UACUCAGGCGCGGCGUAGCCAU | | MIRNA | Shahid_et_al_2018 |
| ccm-MIR12478 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig3790:21153-21345 | + | 1,752 | 21.31 | UCUCUGUGUACUGUAUUUCUU | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-60355 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig38566:7552-7802 | - | 109 | 1.33 | UUGAGCCGCGCCAAUAUCACU | miR171 | MIRNA | ShortStack |
| ccm-b0.1r1-117761 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig392124:565-769 | - | 58 | 0.71 | AGAAAUGUUAGACCAUCUACC | | MIRNA | ShortStack |
| ccm-b0.1r1-64758 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig39376:3797-4073 | - | 156 | 1.90 | CUACUUCUUCCAUAAUCACUC | | MIRNA | ShortStack |
| ccm-b0.1r1-36822 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig394031:3262-3355 | + | 526 | 6.40 | UGAAGCUGCCAGCAUGAUCUU | miR167 | MIRNA | ShortStack |
| ccm-MIR12494b | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig400327:897-990 | + | 6,364 | 77.42 | UCCAUAUGUAUUGAGCUGUCUC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-123798 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig407662:2238-2420 | - | 319 | 3.88 | UUGAGCCGUGCCAAUAUCACG | miR171 | MIRNA | ShortStack |
| ccm-b0.1r1-91677 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig4085:30771-30951 | + | 3,144 | 38.25 | CGAUGGAGGAGAUGAUACGCC | | MIRNA | ShortStack |
| ccm-b0.1r1-70243 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig431502:22370-22512 | + | 37,571 | 457.03 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ccm-b0.1r1-23410 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig432964:46850-47053 | - | 20,549 | 249.97 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | ShortStack |
| ccm-b0.1r1-38717 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig437972:43817-43961 | - | 279 | 3.39 | GACAAUUCAAUACAUAUGGACA | | MIRNA | ShortStack |
| ccm-MIR12494a | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig437972:43817-43906 | - | 278 | 3.38 | GACAAUUCAAUACAUAUGGACA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-38719 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig437972:48305-48418 | - | 3,767 | 45.82 | UGACUGAGAAGUUGAGUGCUA | | MIRNA | ShortStack |
| ccm-MIR12473 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig437972:48308-48418 | - | 3,767 | 45.82 | UGACUGAGAAGUUGAGUGCUA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-18745 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig466265:1160-1387 | + | 760 | 9.25 | AGCUGCCCCAAGAAUUUCAUA | | MIRNA | ShortStack |
| ccm-b0.1r1-95096 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig472813:11230-11474 | - | 2,126 | 25.86 | GAGAGGUGGUUGGCGAUUCCCC | | MIRNA | ShortStack |
| ccm-MIR12476b | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig472813:11323-11474 | - | 2,124 | 25.84 | GAGAGGUGGUUGGCGAUUCCCC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-129371 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig47365:3752-3933 | + | 139 | 1.69 | GCGUAUGAGGAGCCAAGCAUA | miR160 | MIRNA | ShortStack |
| ccm-b0.1r1-86324 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig487665:502-738 | + | 59,201 | 720.15 | CAGCUCGAAUCGUAGUAACCGA | | MIRNA | ShortStack |
| ccm-MIR12469b | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig487665:512-665 | + | 59,199 | 720.13 | CAGCUCGAAUCGUAGUAACCGA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-78451 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig496912:3154-3249 | + | 272 | 3.31 | AGGACAGCAUUUGAGAGGAUU | | MIRNA | ShortStack |
| ccm-b0.1r1-15328 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig505897:8176-8455 | + | 464 | 5.64 | GUGAACAUCAUCCACUACACG | | MIRNA | ShortStack |
| ccm-MIR12481 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig523858:955-1069 | + | 8,283 | 100.76 | AUAUGUAGCAAUUUUGAAGAAU | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-127202 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig5282:93361-93490 | + | 1,672 | 20.34 | UCCAAAGGGAUCACAUUGCUCC | | MIRNA | ShortStack |
| ccm-b0.1r1-114504 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig5355:22296-22384 | - | 752 | 9.15 | UGUAAAAGCAUUCUGGAUCUA | | MIRNA | ShortStack |
| ccm-b0.1r1-123481 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig5397:9368-9525 | + | 21,760 | 264.70 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ccm-b0.1r1-75071 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig55633:14293-14417 | + | 311,901 | 3,794.12 | UGACUUGAGAAUACUUGGCCC | | MIRNA | ShortStack |
| ccm-MIR164 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig557877:1284-1511 | - | 16,921 | 205.84 | CAUGUGCCCUGUUUCUCCACC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-122277 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig591827:491-682 | - | 331 | 4.03 | GCGUAUGUGGAGCCAAGCAUG | | MIRNA | ShortStack |
| ccm-b0.1r1-66843 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig605061:839-984 | - | 3,064 | 37.27 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ccm-b0.1r1-84641 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig63044:4005-4285 | + | 346 | 4.21 | UGGAAAUCAAUUAUGUGGAUU | | MIRNA | ShortStack |
| ccm-MIR12471 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig638850:244-356 | + | 3,827 | 46.55 | ACAGGAGAGAAUGAAAAUGGA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-13190 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig638850:244-424 | + | 3,828 | 46.57 | ACAGGAGAGAAUGAAAAUGGA | | MIRNA | ShortStack |
| ccm-b0.1r1-136809 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig659930:6057-6204 | - | 3,080 | 37.47 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ccm-MIR12476a | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig731890:1240-1380 | - | 484 | 5.89 | UAGUUUCACCCACCGUCUCUC | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-91187 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig80637:1487-1645 | - | 402 | 4.89 | CGUCUCUUUUACAAUGCAACAG | | MIRNA | ShortStack |
| ccm-b0.1r1-120556 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig82669:28508-28667 | + | 1,130 | 13.75 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | ShortStack |
| ccm-b0.1r1-120557 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig82669:28746-28954 | + | 315 | 3.83 | GGUAUGUCGUCUGGCUCGAUU | | MIRNA | ShortStack |
| ccm-b0.1r1-55050 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig8652:12552-12842 | + | 780 | 9.49 | UGGAUAAUCCCUUUCCCACCUA | | MIRNA | ShortStack |
| ccm-MIR12491 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig89165:8140-8361 | + | 2,243 | 27.29 | UCUUCUUCCCAUAUUUGCUCUA | | MIRNA | Shahid_et_al_2018 |
| ccm-b0.1r1-27071 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig89165:8140-8382 | + | 2,243 | 27.29 | UCUUCUUCCCAUAUUUGCUCUA | | MIRNA | ShortStack |
| ccm-b0.1r1-84090 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig96301:6167-6387 | + | 8,961 | 109.01 | UGUCCCGGUGAACAGUUUUCUU | | MIRNA | ShortStack |
| ccm-MIR12479 | Cuscuta campestris (Field Dodder) 0.1 | Cp_v0.1_Contig96301:6237-6387 | + | 8,960 | 108.99 | UGUCCCGGUGAACAGUUUUCUU | | MIRNA | Shahid_et_al_2018 |
Data from Lunardon et al. (2020)