het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Musa acuminata (Banana) genome build 2 (mac-b2)

Version v2 of Musa acuminata cv. DH-Pahang from The Banana Genome Hub

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NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mac-b2r1-33Musa acuminata (Banana) 2chr01:539631-539765+56,734637.23UUGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-149Musa acuminata (Banana) 2chr01:1573397-1573492-17,580197.46GCCUCCACAGGCUUUCUUGAACUGnearMIRNAShortStack
mac-b2r1-887Musa acuminata (Banana) 2chr01:10328678-10328710-3,11735.01UCGCUUGGUGCAGGUCGGGAAmiR168nearMIRNAShortStack
mac-b2r1-1494Musa acuminata (Banana) 2chr01:16470112-16470212-43,139484.53GGCUUCCACAGCUUUCUUGAACUGmiR396nearMIRNAShortStack
mac-b2r1-2521Musa acuminata (Banana) 2chr02:2062459-2062480-3784.25UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
mac-b2r1-3535Musa acuminata (Banana) 2chr02:17873976-17874000-10,884122.25UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-3558Musa acuminata (Banana) 2chr02:18489304-18489324+2622.94AGAAGAGAGAGAGUACAGCCUmiR529nearMIRNAShortStack
mac-b2r1-3562Musa acuminata (Banana) 2chr02:18547148-18547300-2903.26UGACAGAAGAGAGAGAGCACmiR156nearMIRNAShortStack
mac-b2r1-3996Musa acuminata (Banana) 2chr02:24387612-24387640-64,141720.42UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-4024Musa acuminata (Banana) 2chr02:25055352-25055444-143,2441,608.89UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-5261Musa acuminata (Banana) 2chr03:14715793-14715820-25,969291.68GUCUCCACAGGCUUUCUUGAACUGmiR396nearMIRNAShortStack
mac-b2r1-5809Musa acuminata (Banana) 2chr03:24094067-24094173+680.76UCGCUUUGCAUUUGCGUCGGCnearMIRNAShortStack
mac-b2r1-5965Musa acuminata (Banana) 2chr03:26230890-26230910-1581.78UUCUCGGGCAUGUUUGGGAACnearMIRNAShortStack
mac-b2r1-6215Musa acuminata (Banana) 2chr03:29159716-29159739-2382.67AAGUUAGAACUCUUUAGCAAGUGAnearMIRNAShortStack
mac-b2r1-6395Musa acuminata (Banana) 2chr03:31545717-31545798+6,67574.97AGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
mac-b2r1-6474Musa acuminata (Banana) 2chr03:32396975-32397084-1,64318.45AGGGACGAUGAGGAGGUAUUnearMIRNAShortStack
mac-b2r1-6892Musa acuminata (Banana) 2chr04:2144339-2144403-2382.67AACUGCCGACUCAUUCAUUCAmiR319nearMIRNAShortStack
mac-b2r1-7002Musa acuminata (Banana) 2chr04:3632624-3632647+7358.26UGCCAAAGGAGAGUUGCCCUAmiR399nearMIRNAShortStack
mac-b2r1-7038Musa acuminata (Banana) 2chr04:4290459-4290544-3,11134.94GGCUCGCUUGGUGCAGGUCGGGAAmiR168nearMIRNAShortStack
mac-b2r1-7047Musa acuminata (Banana) 2chr04:4578031-4578053+7618.55UCGAUAAACCUCUGCAUCCGGAmiR162nearMIRNAShortStack
mac-b2r1-7049Musa acuminata (Banana) 2chr04:4587839-4587861+3333.74UCGAUAAACCUCUGCAUCCGGAmiR162nearMIRNAShortStack
mac-b2r1-7310Musa acuminata (Banana) 2chr04:7565331-7565391-7,78387.42UGAAGCUGCCAGCAUGAUCUGAmiR167nearMIRNAShortStack
mac-b2r1-7547Musa acuminata (Banana) 2chr04:9841902-9841924+1,00711.31UCGAUAAACCUCUGCAUCCGGAmiR162nearMIRNAShortStack
mac-b2r1-8384Musa acuminata (Banana) 2chr04:19778425-19778447+540.61CAUGUAGAUACUAUGAUGUGUnearMIRNAShortStack
mac-b2r1-9148Musa acuminata (Banana) 2chr04:28239417-28239493-1,90321.37CCUUUCCACAGCUUUCUUGAACUGmiR396nearMIRNAShortStack
mac-b2r1-9149Musa acuminata (Banana) 2chr04:28244799-28244895-17,144192.56GGCUUCCACAGCUUUCUUGAACUGmiR396nearMIRNAShortStack
mac-b2r1-9164Musa acuminata (Banana) 2chr04:28322453-28322482+73,786828.75UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-9168Musa acuminata (Banana) 2chr04:28347373-28347453+3,57440.14UGACAGGAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-9211Musa acuminata (Banana) 2chr04:28909709-28909736+3,08334.63UGAAGCUGCCAGCAUGAUCUAmiR167nearMIRNAShortStack
mac-b2r1-9389Musa acuminata (Banana) 2chr04:32343739-32343825+3093.47GUCUGAUUGAGCCGCGCCAAUAUCmiR171nearMIRNAShortStack
mac-b2r1-9424Musa acuminata (Banana) 2chr04:33020446-33020470-5325.98GAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
mac-b2r1-9840Musa acuminata (Banana) 2chr05:2034573-2034599-3,57740.18UGAAGCUGCCAGCAUGAUCUAmiR167nearMIRNAShortStack
mac-b2r1-10060Musa acuminata (Banana) 2chr05:4594359-4594387+149,5451,679.66UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-10204Musa acuminata (Banana) 2chr05:6014370-6014461-3,36237.76CCGCAGGAGAGAUGAUGCCGCUAnearMIRNAShortStack
mac-b2r1-11683Musa acuminata (Banana) 2chr05:29333347-29333429+8629.68AGAAUCUUGAUGAUGCUGCACmiR172nearMIRNAShortStack
mac-b2r1-11913Musa acuminata (Banana) 2chr05:33030845-33030869+2222.49UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAShortStack
mac-b2r1-12091Musa acuminata (Banana) 2chr05:34770207-34770365-9,311104.58GCGAGAGUAGUACUAGGAUGGGnearMIRNAShortStack
mac-b2r1-12370Musa acuminata (Banana) 2chr05:38171206-38171228-29,539331.78UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-12723Musa acuminata (Banana) 2chr06:920209-920234-2,88432.39UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
mac-b2r1-12844Musa acuminata (Banana) 2chr06:2325823-2325971-2622.94UCGCCGCGAGAUCCGCCCUUCnearMIRNAShortStack
mac-b2r1-12934Musa acuminata (Banana) 2chr06:3444744-3444767+310.35AAGGGUCGUUUGGUGAGAGAUGGUnearMIRNAShortStack
mac-b2r1-13580Musa acuminata (Banana) 2chr06:11435207-11435283+1,20413.52GGUGUCGUGGUGUAGUUGGUUAUnearMIRNAShortStack
mac-b2r1-14223Musa acuminata (Banana) 2chr06:18041901-18041922+2,69030.21AGAAGAGAGAGAGUACAGCUUmiR529nearMIRNAShortStack
mac-b2r1-14838Musa acuminata (Banana) 2chr06:26275958-26275980-780.88GGUCAUGCUCUGGCAGCUUCAUUnearMIRNAShortStack
mac-b2r1-15838Musa acuminata (Banana) 2chr07:1097521-1097673-37,019415.79UCAAGCUGCCAGCAUGAUCUGAmiR167nearMIRNAShortStack
mac-b2r1-15859Musa acuminata (Banana) 2chr07:1371566-1371639-65,841739.52UAGGAGAGAUGACACCGGCUUnearMIRNAShortStack
mac-b2r1-16160Musa acuminata (Banana) 2chr07:6039772-6039807+1431.61AGGCGGAGGAGGUGGGAGCGGnearMIRNAShortStack
mac-b2r1-16177Musa acuminata (Banana) 2chr07:6212252-6212274-1,10712.43UUUGGAUUGAAGGGAGCUCCmiR159nearMIRNAShortStack
mac-b2r1-16588Musa acuminata (Banana) 2chr07:11070439-11070460-1,81420.38UUUUGCUCAAGACCGCGCAACmiR5179nearMIRNAShortStack
mac-b2r1-17112Musa acuminata (Banana) 2chr07:23720366-23720386-1,36215.30UUCCACAGCUUUCUUGAACGGmiR396nearMIRNAShortStack
mac-b2r1-18095Musa acuminata (Banana) 2chr08:905274-905295-1711.92UAGCCAAGGAUGACUUGCCGGmiR169nearMIRNAShortStack
mac-b2r1-18144Musa acuminata (Banana) 2chr08:1641586-1641608+1,77619.95AGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
mac-b2r1-18200Musa acuminata (Banana) 2chr08:2103012-2103040-147,0351,651.47UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-18586Musa acuminata (Banana) 2chr08:6415654-6415751-800.90CGAUGACCGUUCGUGACAUUCnearMIRNAShortStack
mac-b2r1-20762Musa acuminata (Banana) 2chr08:35288217-35288321-5,39160.55UUUUGCUCAAGACCGCGCAACmiR5179nearMIRNAShortStack
mac-b2r1-20966Musa acuminata (Banana) 2chr08:37387629-37387649+2632.95UUUGGCUUCUGGGUAGACGUAnearMIRNAShortStack
mac-b2r1-21857Musa acuminata (Banana) 2chr09:3870194-3870297-1691.90CGGCGACGAGAGGUGAGACGAnearMIRNAShortStack
mac-b2r1-22087Musa acuminata (Banana) 2chr09:7589450-7589536-8619.67UUGAGCCGCGUCAAUAUCUCUmiR171nearMIRNAShortStack
mac-b2r1-22292Musa acuminata (Banana) 2chr09:10188823-10188853-3,60340.47UCGGACCAGGCUUCAUUCCUCmiR166nearMIRNAShortStack
mac-b2r1-22385Musa acuminata (Banana) 2chr09:11420369-11420450+2012.26CGGACAAGAGACGGGGAUGGGnearMIRNAShortStack
mac-b2r1-22674Musa acuminata (Banana) 2chr09:16796711-16796788+3033.40UCUUGACUGGAGAGGUGGCACnearMIRNAShortStack
mac-b2r1-23602Musa acuminata (Banana) 2chr09:34029232-34029330+183,6812,063.07UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
mac-b2r1-23711Musa acuminata (Banana) 2chr09:35101533-35101567+23,769266.97UCGAUAAACCUCUGCAUCCGGmiR162nearMIRNAShortStack
mac-b2r1-23972Musa acuminata (Banana) 2chr09:37603289-37603321+90,6841,018.55UCGGACCAGGCUUCAUUCCUCmiR166nearMIRNAShortStack
mac-b2r1-24093Musa acuminata (Banana) 2chr09:38531252-38531324+17,675198.52UGUUUCCACAGCUUUCUUGAACUGmiR396nearMIRNAShortStack
mac-b2r1-24294Musa acuminata (Banana) 2chr09:40506629-40506732-2,47927.84AGAAGAAAUGGAUCUGAGAACAACnearMIRNAShortStack
mac-b2r1-24634Musa acuminata (Banana) 2chr10:4747381-4747402+2803.15UGGAGAAGCAGGGUACGUGCAmiR164nearMIRNAShortStack
mac-b2r1-24988Musa acuminata (Banana) 2chr10:9149922-9150008+1121.26AGAGGCAAUAGGAUGAAUAUGnearMIRNAShortStack
mac-b2r1-26575Musa acuminata (Banana) 2chr10:32671093-32671113-5,08557.11UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
mac-b2r1-29180Musa acuminata (Banana) 2chr11:27931933-27931981-850.96UCUCUAAGGUAGACAUGAUUCnearMIRNAShortStack