het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Cicer arietinum (Chickpea) genome build 2.0 (car-b2.0)

Version 2.0 of Cicer arietinum cv. ICC4958 from The Cool Season Food Legume Crop Database

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
car-b2.0r1-1337Cicer arietinum (Chickpea) 2.0Ca_LG_1:12003423-12003454-1590.88GUUUAUUGUAUGAAGGGCCACAAGsiRNA23ShortStack
car-b2.0r1-1354Cicer arietinum (Chickpea) 2.0Ca_LG_1:12014457-12014629.2761.53GUUUGUGUAAAGAUUAAAGAGGAsiRNA23ShortStack
MIRNA198Cicer arietinum (Chickpea) 2.0Ca_LG_1:17352158-17352406.20.01AAUAGUGGACAGGCUUACCUUUAsiRNA23Parween_et_al_2015
car-b2.0r1-4079Cicer arietinum (Chickpea) 2.0Ca_LG_2:733640-733713+31,969176.89GUUUCCGGCGGUGGAUGAUUGGUsiRNA23ShortStack
MIRNA13Cicer arietinum (Chickpea) 2.0Ca_LG_2:23537333-23537581+131,948730.07GUUUGACAGAAGAUAGAGAGCACmiR156siRNA23Parween_et_al_2015
car-b2.0r1-5929Cicer arietinum (Chickpea) 2.0Ca_LG_2:23537536-23537561+131,937730.01GUUUGACAGAAGAUAGAGAGCACmiR156siRNA23ShortStack
car-b2.0r1-7928Cicer arietinum (Chickpea) 2.0Ca_LG_3:9101585-9101617-2371.31GAUACUAACACGUGUAUGAGCAGsiRNA23ShortStack
car-b2.0r1-9343Cicer arietinum (Chickpea) 2.0Ca_LG_3:26404396-26404462.440.24GUUUGAAUCAUCAGAGUUUGGAAsiRNA23ShortStack
car-b2.0r1-9967Cicer arietinum (Chickpea) 2.0Ca_LG_3:31534033-31534134-2731.51GUUGAUUGACUAAUUGAACGGCUsiRNA23ShortStack
car-b2.0r1-10082Cicer arietinum (Chickpea) 2.0Ca_LG_3:32569924-32570274.4452.46GUUUAUUGUAAGCGGCUUUAGCAsiRNA23ShortStack
MIRNA177Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442483-39442730+175,145969.08GUUGGAGAAGCAGGGCACGUGCAmiR164siRNA23Parween_et_al_2015
MIRNA375Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442483-39442730+175,145969.08GUUGGAGAAGCAGGGCACGUGCAmiR164siRNA23Parween_et_al_2015
car-b2.0r1-10983Cicer arietinum (Chickpea) 2.0Ca_LG_3:40726362-40726389-1380.76GAUUUUCUCGAUUUGGUACAUUCsiRNA23ShortStack
car-b2.0r1-11075Cicer arietinum (Chickpea) 2.0Ca_LG_3:41426667-41426703+2,01911.17AAUUACUAAUUCAUGAUUUGACAsiRNA23ShortStack
car-b2.0r1-15904Cicer arietinum (Chickpea) 2.0Ca_LG_4:46225275-46225296-3,12517.29GUUGAAUUUCAUAGGAUGGGAUAsiRNA23ShortStack
car-b2.0r1-19286Cicer arietinum (Chickpea) 2.0Ca_LG_5:32705014-32705414.9505.26GUACAAAAGUGGAUACAGCGGUUsiRNA23ShortStack
MIRNA286Cicer arietinum (Chickpea) 2.0Ca_LG_6:18132636-18132884-8,55547.34GUUUGACAGAAGAUAGAGAGCAUmiR156siRNA23Parween_et_al_2015
car-b2.0r1-23519Cicer arietinum (Chickpea) 2.0Ca_LG_6:22538099-22538282.1,2186.74GUCGAAUCCGGCAGGUCGGACCAsiRNA23ShortStack
car-b2.0r1-23724Cicer arietinum (Chickpea) 2.0Ca_LG_6:24309149-24309219+3021.67AAGGACUAGUAUAAUAGAAGAUUsiRNA23ShortStack
car-b2.0r1-23825Cicer arietinum (Chickpea) 2.0Ca_LG_6:25265493-25265524-1,5838.76GUAAAUAGCUCGGCGCCAGGAUGsiRNA23ShortStack
car-b2.0r1-26660Cicer arietinum (Chickpea) 2.0Ca_LG_7:3380446-3380470+2131.18UGUACUGAUGAAUGAACUUGAAGsiRNA23ShortStack
car-b2.0r1-27211Cicer arietinum (Chickpea) 2.0Ca_LG_7:8865810-8865836+5352.96CUUACUAAUUGAUUCUGAGAUAGsiRNA23ShortStack
car-b2.0r1-27255Cicer arietinum (Chickpea) 2.0Ca_LG_7:9591624-9592148+5042.79GUUUAUAAGGUACGUCGGUUUAUsiRNA23ShortStack
MIRNA521Cicer arietinum (Chickpea) 2.0Ca_LG_7:22968145-22968393+10.01GGAAUGAUUGUUGGUAGAACCUAsiRNA23Parween_et_al_2015
car-b2.0r1-29359Cicer arietinum (Chickpea) 2.0Ca_LG_7:33646304-33646336.1,5728.70GUUACUAAAGUUCGGCAUAAUCUsiRNA23ShortStack
car-b2.0r1-29360Cicer arietinum (Chickpea) 2.0Ca_LG_7:33646457-33646481+7193.98GUUACUAAAGUUCGGCAUAAUCUsiRNA23ShortStack
car-b2.0r1-29942Cicer arietinum (Chickpea) 2.0Ca_LG_7:38456278-38456358-2171.20AUUACUAACUUGUAUUCUUCCAGsiRNA23ShortStack
MIRNA290Cicer arietinum (Chickpea) 2.0Ca_LG_7:38963981-38964230+4612.55GUCGGCAAGUUGUUUUUGGCUAUsiRNA23Parween_et_al_2015
car-b2.0r1-30169Cicer arietinum (Chickpea) 2.0Ca_LG_7:40490805-40490886-3802.10UAGAAUUAGACAUAAAAGCAGAUsiRNA23ShortStack
car-b2.0r1-30887Cicer arietinum (Chickpea) 2.0Ca_LG_8:1928949-1929282+7984.42UACGAUAAUGUAGAAUGAUUAGCsiRNA23ShortStack
car-b2.0r1-32010Cicer arietinum (Chickpea) 2.0Ca_LG_8:12600966-12601047.5092.82GUUACAAUUAUAGUCGGUCCAUCsiRNA23ShortStack
car-b2.0r1-32414Cicer arietinum (Chickpea) 2.0Ca_LG_8:15891920-15892152.2961.64UUGAGACGAGAAAACUGAAUUGCsiRNA23ShortStack
car-b2.0r1-33341Cicer arietinum (Chickpea) 2.0contig59125:1085-1254+7254.01GUUGCUGAGACGAGUUGAUGGGAsiRNA23ShortStack
car-b2.0r1-33686Cicer arietinum (Chickpea) 2.0contig63523:652-905-2,44613.53GUUGNAUCAAGUUAGUUACGGGAsiRNA23ShortStack
car-b2.0r1-34083Cicer arietinum (Chickpea) 2.0scaffold00955:1601-2008+12,25567.81GUUGGAUCAAGUUAGUUACGGGAsiRNA23ShortStack
car-b2.0r1-34198Cicer arietinum (Chickpea) 2.0scaffold01265:11571-11757-1,99711.05AAUUACUAAUUCAUGAUUUGACAsiRNA23ShortStack
car-b2.0r1-34201Cicer arietinum (Chickpea) 2.0scaffold01265:19680-19991+2,03411.25AAUUACUAAUUCAUGAUUUGACAsiRNA23ShortStack
MIRNA423Cicer arietinum (Chickpea) 2.0scaffold01593:42848-43096+20.01UAUGUCAACAAGCACUGAAAGCAAsiRNA23Parween_et_al_2015
car-b2.0r1-34475Cicer arietinum (Chickpea) 2.0scaffold01632:61735-61928.2861.58GUUGAUUAUCAACGAUUGGUGGCsiRNA23ShortStack
car-b2.0r1-35545Cicer arietinum (Chickpea) 2.0scaffold03263:19854-19975-1,83310.14AUCGAAUGACUAUUCAUCUAUUGsiRNA23ShortStack
car-b2.0r1-35927Cicer arietinum (Chickpea) 2.0scaffold03730:18463-18674+7484.14GUUGNAUCAAGUUAGUUACGGGAsiRNA23ShortStack
MIRNA530Cicer arietinum (Chickpea) 2.0scaffold04895:5236-5484-20.01AGGAUAUAGAAUGUAGAAGUACCsiRNA23Parween_et_al_2015
car-b2.0r1-37811Cicer arietinum (Chickpea) 2.0scaffold07026:342-711-3,25518.01GUUGNAUCAAGUUAGUUACGGGAsiRNA23ShortStack
car-b2.0r1-39515Cicer arietinum (Chickpea) 2.0scaffold14802:1506-1736+4,09622.66GUUGGAUCAAGUUAGUUACGGGAsiRNA23ShortStack
car-b2.0r1-40066Cicer arietinum (Chickpea) 2.0scaffold21116:35676-35708-1540.85AAGAGACAACGUCUGUGACUGUUsiRNA23ShortStack