het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Cicer arietinum (Chickpea) genome build 2.0 (car-b2.0)

Version 2.0 of Cicer arietinum cv. ICC4958 from The Cool Season Food Legume Crop Database

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
car-b2.0r1-39Cicer arietinum (Chickpea) 2.0Ca_LG_1:653458-653480-3,83021.19UUUGGAUUGAAGGGAGCUCCAmiR159nearMIRNAShortStack
car-b2.0r1-604Cicer arietinum (Chickpea) 2.0Ca_LG_1:5697324-5697461+7874.35GUUACGCAGGAGAGAUGAUGCCAnearMIRNAShortStack
car-b2.0r1-933Cicer arietinum (Chickpea) 2.0Ca_LG_1:8576510-8576567-1290.71UACGGGUACCUGAAUUAAGAUUGCnearMIRNAShortStack
car-b2.0r1-1242Cicer arietinum (Chickpea) 2.0Ca_LG_1:11204434-11204725+1,0275.68UAAAACUGUAGAUAGAUAAAAUGCnearMIRNAShortStack
car-b2.0r1-1826Cicer arietinum (Chickpea) 2.0Ca_LG_1:18267852-18267875+1841.02UUAUAAGUCGCUAUUUGGAAUGGCnearMIRNAShortStack
car-b2.0r1-2153Cicer arietinum (Chickpea) 2.0Ca_LG_1:22222552-22222572-1590.88UGUUAGCUUUCUUCGUUCUCUnearMIRNAShortStack
car-b2.0r1-4264Cicer arietinum (Chickpea) 2.0Ca_LG_2:2793750-2793926-2481.37GUUGUUGUUUGUGUUUGUAGAAGCnearMIRNAShortStack
car-b2.0r1-4603Cicer arietinum (Chickpea) 2.0Ca_LG_2:6175706-6175741-1610.89AGGAUGAUGUAGAAUGAUUAAUACnearMIRNAShortStack
car-b2.0r1-5823Cicer arietinum (Chickpea) 2.0Ca_LG_2:22138469-22138586+9415.21UACUUUAUUUUCUACACUAAAnearMIRNAShortStack
car-b2.0r1-5847Cicer arietinum (Chickpea) 2.0Ca_LG_2:22741205-22741317+4332.40UGACAUGAUUGAGACUGUAAUGGUnearMIRNAShortStack
car-b2.0r1-6606Cicer arietinum (Chickpea) 2.0Ca_LG_2:28774331-28774370-2051.13UCUGAAAUUAAGUUAAGAGACCGCnearMIRNAShortStack
car-b2.0r1-6823Cicer arietinum (Chickpea) 2.0Ca_LG_2:30481955-30482048+2,21012.23GUUGUCGCAGGAGUGAUGGAGCCnearMIRNAShortStack
car-b2.0r1-7322Cicer arietinum (Chickpea) 2.0Ca_LG_3:2459291-2459383+2951.63UGAUCUUUGAAUAUGUGAGGCnearMIRNAShortStack
car-b2.0r1-7436Cicer arietinum (Chickpea) 2.0Ca_LG_3:3477819-3477871+21,450118.68UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
car-b2.0r1-7437Cicer arietinum (Chickpea) 2.0Ca_LG_3:3477951-3477982+3,04616.85CAUGUGCCCCUCUUCCCCAUCmiR164nearMIRNAShortStack
car-b2.0r1-7989Cicer arietinum (Chickpea) 2.0Ca_LG_3:9874840-9874889-3732.06GAACGACGUAGGAUAGUAAAAGGCnearMIRNAShortStack
car-b2.0r1-8128Cicer arietinum (Chickpea) 2.0Ca_LG_3:11474691-11474716-1390.77UGUUGUUAGACGAAUUUGAAUGGCnearMIRNAShortStack
car-b2.0r1-8546Cicer arietinum (Chickpea) 2.0Ca_LG_3:16777822-16777882-3161.75UAAUAGCAUUUAGAACGGUCGUCAnearMIRNAShortStack
car-b2.0r1-8826Cicer arietinum (Chickpea) 2.0Ca_LG_3:20660122-20660144+2321.28AGGAGCUUCCUACAGCCCAACnearMIRNAShortStack
car-b2.0r1-8827Cicer arietinum (Chickpea) 2.0Ca_LG_3:20660233-20660258+25,149139.15UGGACUGAAGGGAGCUCCUUCmiR319nearMIRNAShortStack
car-b2.0r1-10444Cicer arietinum (Chickpea) 2.0Ca_LG_3:35584729-35584752+2,88415.96UGAAGCUGCCAGCAUGAUCUAmiR167nearMIRNAShortStack
car-b2.0r1-10445Cicer arietinum (Chickpea) 2.0Ca_LG_3:35584832-35584857+1831.01GGUCAUGCUGUGACAGCCUCACUmiR167nearMIRNAShortStack
MIRNA83Cicer arietinum (Chickpea) 2.0Ca_LG_3:38954848-38955096+30,170166.93GUUGAAGCUGCCAGCAUGAUCUGAmiR167nearMIRNAParween_et_al_2015
MIRNA345Cicer arietinum (Chickpea) 2.0Ca_LG_3:38954848-38955096+30,170166.93GUUGAAGCUGCCAGCAUGAUCUGAmiR167nearMIRNAParween_et_al_2015
MIRNA90Cicer arietinum (Chickpea) 2.0Ca_LG_3:38954848-38955096+30,170166.93GUUGAAGCUGCCAGCAUGAUCUGAmiR167nearMIRNAParween_et_al_2015
car-b2.0r1-10804Cicer arietinum (Chickpea) 2.0Ca_LG_3:38954874-38954969+30,169166.93GUUGAAGCUGCCAGCAUGAUCUGAmiR167nearMIRNAShortStack
MIRNA178Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442667-39442915+175,487970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAParween_et_al_2015
MIRNA182Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442667-39442915+175,487970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAParween_et_al_2015
MIRNA183Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442667-39442915+175,487970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAParween_et_al_2015
MIRNA184Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442667-39442915+175,487970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAParween_et_al_2015
MIRNA276Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442667-39442915+175,487970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAParween_et_al_2015
MIRNA334Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442667-39442915+175,487970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAParween_et_al_2015
car-b2.0r1-10853Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442687-39442766+175,486970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
MIRNA187Cicer arietinum (Chickpea) 2.0Ca_LG_3:39442693-39442767+175,486970.97GUUGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAParween_et_al_2015
car-b2.0r1-11091Cicer arietinum (Chickpea) 2.0Ca_LG_3:41542147-41542199+1510.84GAAAUUAGGGACUAAAGAAAAUGCnearMIRNAShortStack
MIRNA498Cicer arietinum (Chickpea) 2.0Ca_LG_3:41556856-41557104+540.30UCAUAUUUGCUUUGCUGCUUGUGnearMIRNAParween_et_al_2015
car-b2.0r1-11122Cicer arietinum (Chickpea) 2.0Ca_LG_3:41766091-41766237-1911.06AGGAGAUGGAACUCAGAGGGGUGCnearMIRNAShortStack
car-b2.0r1-11181Cicer arietinum (Chickpea) 2.0Ca_LG_3:42148609-42148691-1,98010.96GUUGGAGAAGCAGGACACGUGCAmiR164nearMIRNAShortStack
MIRNA185Cicer arietinum (Chickpea) 2.0Ca_LG_3:42148613-42148685-1,97910.95GUUGGAGAAGCAGGACACGUGCAmiR164nearMIRNAParween_et_al_2015
car-b2.0r1-11775Cicer arietinum (Chickpea) 2.0Ca_LG_4:6116705-6116972-1,0205.64ACAAUACUGUGUAGAAUAAAGAGGnearMIRNAShortStack
car-b2.0r1-11990Cicer arietinum (Chickpea) 2.0Ca_LG_4:8129939-8130086+2,18512.09AUUAGGACUAUUAAUUUGAGACGGnearMIRNAShortStack
car-b2.0r1-13539Cicer arietinum (Chickpea) 2.0Ca_LG_4:22000188-22000334+4122.28GAAACGAGCCGGACAAUGAAACGCnearMIRNAShortStack
car-b2.0r1-13648Cicer arietinum (Chickpea) 2.0Ca_LG_4:22918998-22919109+1510.84GAACUAUAGAGUGUCUGGAUUGGCnearMIRNAShortStack
MIRNA136Cicer arietinum (Chickpea) 2.0Ca_LG_4:25917746-25917994-8384.64GCGUAUGAGGAGCCAAGCAUAmiR160nearMIRNAParween_et_al_2015
car-b2.0r1-13966Cicer arietinum (Chickpea) 2.0Ca_LG_4:25917865-25917976-8384.64GCGUAUGAGGAGCCAAGCAUAmiR160nearMIRNAShortStack
MIRNA130Cicer arietinum (Chickpea) 2.0Ca_LG_4:25917870-25918118-8394.64GCGUAUGAGGAGCCAAGCAUAmiR160nearMIRNAParween_et_al_2015
MIRNA137Cicer arietinum (Chickpea) 2.0Ca_LG_4:26921417-26921665-8254.57GCGUAUGAGGAGCCAAGCAUAmiR160nearMIRNAParween_et_al_2015
car-b2.0r1-14082Cicer arietinum (Chickpea) 2.0Ca_LG_4:26921537-26921648-8254.57GCGUAUGAGGAGCCAAGCAUAmiR160nearMIRNAShortStack
MIRNA131Cicer arietinum (Chickpea) 2.0Ca_LG_4:26921541-26921789-8264.57GCGUAUGAGGAGCCAAGCAUAmiR160nearMIRNAParween_et_al_2015
car-b2.0r1-15523Cicer arietinum (Chickpea) 2.0Ca_LG_4:41037801-41037890+4832.67UAGAAGAUCGUUUUCUGGGGAAGCnearMIRNAShortStack
car-b2.0r1-15589Cicer arietinum (Chickpea) 2.0Ca_LG_4:42162801-42163091-5903.26UCUGAAAUUAAGUUAAGGGACCGCnearMIRNAShortStack
MIRNA509Cicer arietinum (Chickpea) 2.0Ca_LG_4:45801583-45801698-1160.64UUGUCGUAGGUAGAAAUUUAUAGCnearMIRNAParween_et_al_2015
MIRNA518Cicer arietinum (Chickpea) 2.0Ca_LG_4:47593146-47593265-30.02CAAGUUGGUUACUAUCAUUCAnearMIRNAParween_et_al_2015
car-b2.0r1-16183Cicer arietinum (Chickpea) 2.0Ca_LG_4:52248756-52248848-4222.34UUGCUGAUCGCAAUCUGGGGAUGCnearMIRNAShortStack
MIRNA9Cicer arietinum (Chickpea) 2.0Ca_LG_5:9582816-9583064+10,77059.59GUUGACAGAAGAGAGUGAGCACmiR156nearMIRNAParween_et_al_2015
MIRNA11Cicer arietinum (Chickpea) 2.0Ca_LG_5:9582816-9583064+10,77059.59GUUGACAGAAGAGAGUGAGCACmiR156nearMIRNAParween_et_al_2015
car-b2.0r1-17633Cicer arietinum (Chickpea) 2.0Ca_LG_5:13303116-13303360-1,0585.85GUAUAGAAACUGAAUAGAGGAAACnearMIRNAShortStack
car-b2.0r1-17756Cicer arietinum (Chickpea) 2.0Ca_LG_5:15121855-15121975+4522.50UUGACUGUAGGACUGCAUGCAnearMIRNAShortStack
car-b2.0r1-18129Cicer arietinum (Chickpea) 2.0Ca_LG_5:23269296-23269338-1740.96UUUGUUGACUCAACUUUCUCUnearMIRNAShortStack
car-b2.0r1-18231Cicer arietinum (Chickpea) 2.0Ca_LG_5:24101387-24101538-1,3627.54AACUUUGGAACGUUGAAGAAGAUGnearMIRNAShortStack
car-b2.0r1-18704Cicer arietinum (Chickpea) 2.0Ca_LG_5:28011686-28011944+5,77431.95AACGACUGAACUGUGUAUGACUGCnearMIRNAShortStack
MIRNA468Cicer arietinum (Chickpea) 2.0Ca_LG_5:30906567-30906815+930.52UUAAUAGCGAGAUCGUCAACAnearMIRNAParween_et_al_2015
car-b2.0r1-19530Cicer arietinum (Chickpea) 2.0Ca_LG_5:35036163-35036369-8864.90UUUUACUAUGCAGUAGGAGGUCGCnearMIRNAShortStack
car-b2.0r1-20523Cicer arietinum (Chickpea) 2.0Ca_LG_5:42723781-42723973-12,25967.83GCUUACUCUCUAUCUGUCACCmiR156nearMIRNAShortStack
MIRNA272Cicer arietinum (Chickpea) 2.0Ca_LG_5:42723818-42723907-12,23067.67GCUUACUCUCUAUCUGUCACCmiR156nearMIRNAParween_et_al_2015
MIRNA19Cicer arietinum (Chickpea) 2.0Ca_LG_5:42723818-42723907-12,23067.67GCUUACUCUCUAUCUGUCACCmiR156nearMIRNAParween_et_al_2015
car-b2.0r1-20749Cicer arietinum (Chickpea) 2.0Ca_LG_5:44755099-44755313-12,21767.60GCUUACUCUCUAUCUGUCACCmiR156nearMIRNAShortStack
MIRNA273Cicer arietinum (Chickpea) 2.0Ca_LG_5:44755138-44755227-12,19367.46GCUUACUCUCUAUCUGUCACCmiR156nearMIRNAParween_et_al_2015
MIRNA20Cicer arietinum (Chickpea) 2.0Ca_LG_5:44755138-44755227-12,19367.46GCUUACUCUCUAUCUGUCACCmiR156nearMIRNAParween_et_al_2015
MIRNA69Cicer arietinum (Chickpea) 2.0Ca_LG_6:4725396-4725644+6,14133.98UUGGACUGAAGGGAGCUCCCmiR319nearMIRNAParween_et_al_2015
MIRNA72Cicer arietinum (Chickpea) 2.0Ca_LG_6:4725396-4725644+6,14133.98UUGGACUGAAGGGAGCUCCCmiR319nearMIRNAParween_et_al_2015
MIRNA64Cicer arietinum (Chickpea) 2.0Ca_LG_6:4725429-4725677+6,14133.98UUGGACUGAAGGGAGCUCCCmiR319nearMIRNAParween_et_al_2015
MIRNA357Cicer arietinum (Chickpea) 2.0Ca_LG_6:4725429-4725677+6,14133.98UUGGACUGAAGGGAGCUCCCmiR319nearMIRNAParween_et_al_2015
car-b2.0r1-21495Cicer arietinum (Chickpea) 2.0Ca_LG_6:4725581-4725625+6,01033.25UUGGACUGAAGGGAGCUCCCmiR319nearMIRNAShortStack
car-b2.0r1-22250Cicer arietinum (Chickpea) 2.0Ca_LG_6:11427570-11427619-10,86560.12UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
car-b2.0r1-22351Cicer arietinum (Chickpea) 2.0Ca_LG_6:12072655-12072679-1410.78AAUGGACAAGAAUAAGAAGACGAUnearMIRNAShortStack
car-b2.0r1-22416Cicer arietinum (Chickpea) 2.0Ca_LG_6:12614904-12615020-4,41924.45CAAUAGUUGUGAUAUGUUGACGGUnearMIRNAShortStack
car-b2.0r1-22417Cicer arietinum (Chickpea) 2.0Ca_LG_6:12617922-12617965-1,0846.00UGCACCAGAGUAGAUUUUUCGnearMIRNAShortStack
car-b2.0r1-24208Cicer arietinum (Chickpea) 2.0Ca_LG_6:29694061-29694139-1921.06AGGAUGAUGUUGAAUGAUUAAUGCnearMIRNAShortStack
car-b2.0r1-26345Cicer arietinum (Chickpea) 2.0Ca_LG_7:215064-215187+1,0515.82GAAGUCGCUAUUUGGAACUCGGGCnearMIRNAShortStack
car-b2.0r1-26498Cicer arietinum (Chickpea) 2.0Ca_LG_7:1765209-1765302+5292.93UAGAAGAUCGUUUUCUGGGGAAGCnearMIRNAShortStack
car-b2.0r1-27220Cicer arietinum (Chickpea) 2.0Ca_LG_7:9090863-9090889+1720.95GUAGAACAAAUUAAAGAAUCGGCAnearMIRNAShortStack
car-b2.0r1-27445Cicer arietinum (Chickpea) 2.0Ca_LG_7:12601552-12601653+6553.62GAAGUCGCCAUUUGGAACUCGGGCnearMIRNAShortStack
car-b2.0r1-28431Cicer arietinum (Chickpea) 2.0Ca_LG_7:26134955-26135026-2521.39CACUUAUUGAAGGAUGUAGAUGGUnearMIRNAShortStack
car-b2.0r1-28920Cicer arietinum (Chickpea) 2.0Ca_LG_7:30449561-30449666+3722.06AUAGUCUGAACAAGAAUUAGAGGCnearMIRNAShortStack
car-b2.0r1-29612Cicer arietinum (Chickpea) 2.0Ca_LG_7:35618988-35619177+9525.27CAAGUGGUGGUAGAACAUAGAUGCnearMIRNAShortStack
car-b2.0r1-31440Cicer arietinum (Chickpea) 2.0Ca_LG_8:7226389-7226413+2791.54GUUGCUUAUAUUUUGGGACGGAGnearMIRNAShortStack
car-b2.0r1-31483Cicer arietinum (Chickpea) 2.0Ca_LG_8:7579840-7579951+4462.47UGACUAAUCUGAGAUUUUGGCnearMIRNAShortStack
car-b2.0r1-32220Cicer arietinum (Chickpea) 2.0Ca_LG_8:14656690-14656861-7434.11AAUGAGAUUAUUGACAAAUGUAGAnearMIRNAShortStack
car-b2.0r1-32478Cicer arietinum (Chickpea) 2.0Ca_LG_8:16379366-16379511-2221.23UAAUGACAUGAAUUUUGAAAGAGCnearMIRNAShortStack
car-b2.0r1-32762Cicer arietinum (Chickpea) 2.0contig52064:1439-1486-2921.62CAUAUAAAUCGAUAUGUGUAGAGCnearMIRNAShortStack
car-b2.0r1-33481Cicer arietinum (Chickpea) 2.0contig60879:102-140-880.49UGAAGAUCGUCUGAUGGAGGAGGCnearMIRNAShortStack
car-b2.0r1-35156Cicer arietinum (Chickpea) 2.0scaffold02689:48519-48669-8234.55UGGCAGCGACUGUAAUGUUUCGGCnearMIRNAShortStack
car-b2.0r1-35301Cicer arietinum (Chickpea) 2.0scaffold02909:28173-28302-5102.82GAAGGGAUUGAGAGAGACGAGUCAnearMIRNAShortStack
car-b2.0r1-35691Cicer arietinum (Chickpea) 2.0scaffold03400:22215-22318-1971.09UUUAUAAGAGAUAAUUGGGUUnearMIRNAShortStack
car-b2.0r1-35965Cicer arietinum (Chickpea) 2.0scaffold03795:9866-10096+1,0735.94AGACGGUAACACUGAAAAGAUGGCnearMIRNAShortStack
MIRNA85Cicer arietinum (Chickpea) 2.0scaffold04485:8684-8932-6,34835.12UGAAGCUGCCAGCAUGAUCUCAmiR167nearMIRNAParween_et_al_2015
car-b2.0r1-37373Cicer arietinum (Chickpea) 2.0scaffold05983:2305-2364+1770.98AAGAGAACUGAAUGUACCAUUGGUnearMIRNAShortStack
car-b2.0r1-37717Cicer arietinum (Chickpea) 2.0scaffold06726:1349-1466+1,84010.18GAAUGUUGUCUGGCUCGAGGAmiR166nearMIRNAShortStack
MIRNA197Cicer arietinum (Chickpea) 2.0scaffold06726:1359-1433+1,83310.14GAAUGUUGUCUGGCUCGAGGAmiR166nearMIRNAParween_et_al_2015
car-b2.0r1-38008Cicer arietinum (Chickpea) 2.0scaffold07628:1838-1983-4832.67GUUUGUGGGAUUGAUUGAGGCAUAnearMIRNAShortStack
car-b2.0r1-38130Cicer arietinum (Chickpea) 2.0scaffold08043:1084-1286-6803.76UCUUACUGUAGAAGUUGUAACGACnearMIRNAShortStack
car-b2.0r1-38509Cicer arietinum (Chickpea) 2.0scaffold09548:3048-3324-7684.25ACGAGACCAGACUUUGAAAGGGCUnearMIRNAShortStack
car-b2.0r1-38631Cicer arietinum (Chickpea) 2.0scaffold09959:2389-2415-3281.82AAUGGACAAGAAUAAGAAGACGAUnearMIRNAShortStack
car-b2.0r1-38846Cicer arietinum (Chickpea) 2.0scaffold10896:2938-2979+3541.96GAACGACGUAGGAUAGUAAAAGGCnearMIRNAShortStack
car-b2.0r1-38892Cicer arietinum (Chickpea) 2.0scaffold11114:2977-3023+6943.84AUAGUCUGAACAAGAAUUAGAGGCnearMIRNAShortStack
car-b2.0r1-38972Cicer arietinum (Chickpea) 2.0scaffold11449:1231-1257+290.16UGGACUGAGAUUCUAGCACUUUnearMIRNAShortStack
MIRNA522Cicer arietinum (Chickpea) 2.0scaffold12746:1231-1338+2961.64ACAAUACAAAAGACCUGAACAUGCnearMIRNAParween_et_al_2015
car-b2.0r1-39791Cicer arietinum (Chickpea) 2.0scaffold18604:1251-1355+1,91810.61GAAUGUUGUCUGGCUCGAGGAmiR166nearMIRNAShortStack
car-b2.0r1-39817Cicer arietinum (Chickpea) 2.0scaffold18784:1351-1583-8904.92CUAGGAAUGACACUUUGAAGUGGCnearMIRNAShortStack
car-b2.0r1-39860Cicer arietinum (Chickpea) 2.0scaffold19129:2041-2068-10,85660.07AUACAUGUCGCUCUCACCUGGmiR5232nearMIRNAShortStack
MIRNA57Cicer arietinum (Chickpea) 2.0scaffold19899:1174-1422+836,7814,629.91UUUGGAUUGAAGGGAGCUCUAmiR159nearMIRNAParween_et_al_2015
MIRNA523Cicer arietinum (Chickpea) 2.0scaffold23468:15293-15541-1210.67AAUUAAUGAUGUAGAACAAAAGGCnearMIRNAParween_et_al_2015