het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Glycine max (Soybean) genome build 1.0 (gma-b1.0)

Version v1.0 of Glycine max Merrill cv. Williams 82 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
gma-MIR5670a-1Glycine max (Soybean) 1.01:6388103-6388238.1,4280.35UACAUCAUACCAUAUUUGCUUCmiR5670siRNA22miRBase21-uniq
gma-MIR4993-1Glycine max (Soybean) 1.01:27756163-27756232-16,0653.94GAUGAGCGGCGGCGGUGGAGGAmiR4993siRNA22miRBase21-uniq
gma-MIR4374a-1Glycine max (Soybean) 1.01:41170524-41170690.17,1894.22CAACACCGUCUUUGAAGCCUGGmiR4374siRNA22miRBase21-uniq
gma-MIR9724-1Glycine max (Soybean) 1.013:11864778-11864916+3,7230.91CUAUCUUGGCACUAUCUCUAACmiR9724siRNA22miRBase21-uniq
gma-MIR9723-1Glycine max (Soybean) 1.013:14782670-14782843-3,8450.94CAAAGGAGAUUUGGACAACUCmiR9723siRNA22miRBase21-uniq
gma-MIR9725-1Glycine max (Soybean) 1.013:22172678-22172836-4450.11UUAAUUUUUUUGGAUCAGCAUCmiR9725siRNA22miRBase21-uniq
gma-MIR4362-1Glycine max (Soybean) 1.013:34873645-34873842+7,3701.81CCUUAGGACAGACGUCAUGUAGmiR4362siRNA22miRBase21-uniq
gma-MIR4348b-1Glycine max (Soybean) 1.013:37642614-37642836+8,9752.20UUUCUACGAUACUACCAUCACUsiRNA22miRBase21-uniq
gma-MIR5678-1Glycine max (Soybean) 1.014:6757382-6757623.91,87322.54UUCCAUGAUAAGAUCUUUGACUmiR5678siRNA22miRBase21-uniq
gma-MIR5370-1Glycine max (Soybean) 1.014:6763304-6763456.74,78018.34UGCACUAAAGAUUGUCCAAAAGmiR5370siRNA22miRBase21-uniq
gma-MIR2107-8Glycine max (Soybean) 1.014:39834778-39834831.40.00UGUGAUGUGAACCUGAGUAGGAGUsiRNA22miRBase21-uniq
gma-MIR4345-1Glycine max (Soybean) 1.014:49069099-49069192+67,85116.64CUAAGACGGAACUUACAAAGAUmiR4345siRNA22miRBase21-uniq
gma-MIR5379-1Glycine max (Soybean) 1.016:28536014-28536181-61,33615.05UGAGGAUAUGUCACAUGGUCGAmiR4997siRNA22miRBase21-uniq
gma-MIR5668-1Glycine max (Soybean) 1.016:28980105-28980217+2,6830.66CAGCAAUGGAAUUAUAGACUGCmiR5668siRNA22miRBase21-uniq
gma-MIR393j-1Glycine max (Soybean) 1.016:33891070-33891223+314,90077.25UCCAAAGGGAUCGCAUUGAUCUmiR393siRNA22miRBase21-uniq
gma-MIR9756-1Glycine max (Soybean) 1.018:47593856-47594092+4,0370.99UGAGAACUUUAUCCAAACAGAGmiR9756siRNA22miRBase21-uniq
gma-MIR4340-1Glycine max (Soybean) 1.019:2050287-2050351.5,8601.44UGCUGCAGAGAUAGGGACGCGCmiR4340siRNA22miRBase21-uniq
gma-MIR9745-1Glycine max (Soybean) 1.019:49543831-49543980+3,5780.88CCGUAUAACCAAACAUGGAGGGUmiR9745siRNA22miRBase21-uniq
gma-MIR398b-1Glycine max (Soybean) 1.02:10988433-10988567-110,58427.13GAGUGGAUCUGAGAACACAAGGmiR398siRNA22miRBase21-uniq
gma-MIR9762-1Glycine max (Soybean) 1.02:42141329-42141548+7,1961.77UUACAGAUCUUUGGAAACAGGCmiR9762siRNA22miRBase21-uniq
gma-MIR9757-1Glycine max (Soybean) 1.02:48299301-48299442.5,2641.29CAACCCUCCUCAGUUAGAUCUCmiR9757siRNA22miRBase21-uniq
gma-MIR9748-1Glycine max (Soybean) 1.020:3670847-3670942+4060.10GAAGGAAGUGUAGAGGGAUGACmiR9748siRNA22miRBase21-uniq
gma-MIR9747-1Glycine max (Soybean) 1.020:31059583-31059739+1,4160.35UUAAAGUAUUUAAAUCGUUGCAmiR9747siRNA22miRBase21-uniq
gma-MIR9730-1Glycine max (Soybean) 1.020:36456354-36456591-17,4614.28AAGGCUUGAGGACGGACAUCCAsiRNA22miRBase21-uniq
gma-MIR1516a-1Glycine max (Soybean) 1.03:47035753-47035863.3,4090.84UUGGAUACAAGUUAUAAGCUCUmiR1516siRNA22miRBase21-uniq
gma-MIR4366-1Glycine max (Soybean) 1.05:29185028-29185289.18,3104.49UUGGAUCUUGUUUCAACAGCCUmiR4366siRNA22miRBase21-uniq
gma-MIR5781-1Glycine max (Soybean) 1.06:35859204-35859285-4,4471.09CUGAAACUGAGACUGCAUCUGGmiR5781siRNA22miRBase21-uniq
gma-MIR5034-1Glycine max (Soybean) 1.06:46029758-46029908+3920.10UACCCUUUCAGAUAGUCUCAAAmiR5034siRNA22miRBase21-uniq
gma-MIR5679-1Glycine max (Soybean) 1.08:25784368-25784446-2230.06UUGGUGACCCAGAAGAAGUUGAmiR5679siRNA22miRBase21-uniq
gma-MIR4408-1Glycine max (Soybean) 1.08:28229373-28229513+4,0761.00UUGGAUGAGGGUUGGAAGAAAUmiR4408siRNA22miRBase21-uniq
gma-MIR5378-1Glycine max (Soybean) 1.09:29816467-29816705-44,42010.90CAUUUGAAGGAUAGAACACAAAmiR5378siRNA22miRBase21-uniq