Data from Lunardon et al. (2020)

Annotations viewer

Genome

Triticum aestivum (Wheat) genome build 1 (tae-b1)

Version TGACv1 of Triticum aestivum cv. Chinese spring CS42 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
tae-MIR1138-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_000385_1AL:13475-13668	-	45	0.13	AAUCUUGUAUAGGUCUGUCUAGGA		siRNA24	miRBase21-BestBlastHit
tae-MIR5084-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_001781_1AL:41096-41224	.	756	2.18	AGCACCAUACGGUACUGCAGAGGA	miR5084	siRNA24	miRBase21-BestBlastHit
tae-MIR1125-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_049951_1BS:3799-3938	.	445	1.29	AAACUUAGAUCUCGGAAAAUGCGG		siRNA24	miRBase21-BestBlastHit
tae-MIR9783-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_061194_1DL:70299-70393	.	213	0.62	AGAAGAACUCGGCUUAUUUUACUA		siRNA24	miRBase21-BestBlastHit
tae-MIR1127b-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_114891_2AS:9290-9416	.	55	0.16	UUUCCGGACAGAAGCAUCUGU	miR1127	siRNA24	miRBase21-BestBlastHit
tae-MIR395b-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_158142_2DL:53102-53188	+	38	0.11	AAGCAUUUAGUAGACAUUGGCCAC	miR395	siRNA24	miRBase21-BestBlastHit
tae-MIR9675-m2	Triticum aestivum (Wheat) 1	TGACv1_scaffold_233521_3B:3299-3527	.	18	0.05	ACCAAAGGAUGGCAUGUACCUGAA	miR9675	siRNA24	miRBase21-BestBlastHit
tae-MIR1122c-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_250625_3DL:46150-46245	+	1	0.00	AUAAUAUUAGACGUUUUUGCAAGC	miR1122	siRNA24	miRBase21-BestBlastHit
tae-MIR9657a-m2	Triticum aestivum (Wheat) 1	TGACv1_scaffold_374355_5AL:46646-46723	.	2	0.01	CAACGCCGUGUGCUUCCUCGUCGA	miR9657	siRNA24	miRBase21-BestBlastHit
tae-MIR1847-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_378121_5AL:20518-20610	.	556	1.61	ACCUGCAGUUGGGCCAAUGAC	miR1847	siRNA24	miRBase21-BestBlastHit
tae-MIR1117-m8	Triticum aestivum (Wheat) 1	TGACv1_scaffold_404546_5BL:55754-55870	.	4	0.01	ACAAACCGCGACUAAAAGGGAGGA	miR1117	siRNA24	miRBase21-BestBlastHit
tae-MIR1136-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_487524_6AS:18369-18475	+	1	0.00	AGGGAGUAGAAGCUAAAUUAGAAC		siRNA24	miRBase21-BestBlastHit
tae-MIR5049-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_579290_7BL:8434-8547	.	41	0.12	UCAGGUACUCCCUCCGAUCC	miR5049	siRNA24	miRBase21-BestBlastHit
tae-MIR1130a-m1	Triticum aestivum (Wheat) 1	TGACv1_scaffold_602796_7DL:116257-116378	+	20	0.06	UGAGACGGAGGGAGUAUAAGACAU	miR1130	siRNA24	miRBase21-BestBlastHit
tae-MIR1136-m2	Triticum aestivum (Wheat) 1	TGACv1_scaffold_605078_7DL:23621-23727	+	6	0.02	UCGGAACGGAGGGAGUAGUAGAGA		siRNA24	miRBase21-BestBlastHit
tae-MIR1117-m13	Triticum aestivum (Wheat) 1	TGACv1_scaffold_643161_U:5529-5645	.	31	0.09	ACCGCGACUAAAAGGGAGGAGCUU	miR1117	siRNA24	miRBase21-BestBlastHit