het siRNAsData from Lunardon et al. (2020)miRNA

Genome and annotations summary

Triticum aestivum (Wheat) genome build 1 (tae-b1)

Version TGACv1 of Triticum aestivum cv. Chinese spring CS42 from Ensembl Plants

Go to genome browser

Download genome assembly FASTA file

BLAST search


Small RNA Loci

Click links below to show sub-sets of annotations

ShortStackmiRBase21-BestBlastHitTang_et_al_2012
MIRNA113280
nearMIRNA326120
siRNA2027910
siRNA215,680202
siRNA2289770
siRNA2341550
siRNA2449,970160
OtherRNA8,100300
NotExpressed0490


Small RNA-seq data

Reference Set

accessionaligned readsunaligned readssource dbis refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.tissueecotype / cultivargenotypereplicate id Alignments that are biological replicates have the same replicate idsrefset id If set, the alignment is part of the indicated reference setdescription
wheat_all_reference_set181,478,773164,609,587none1mixedmixedwtrefset11merge of 27 libraries - reference set 1

Invidiual alignments (27)