Data from Lunardon et al. (2020)

Annotations viewer

Genome

Hevea brasiliensis (Rubber Tree) genome build 0 (hbr-b0)

Version v0 of Hevea brasiliensis cv. Reyan7-33-97 from NCBI

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Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
hbr-MIR6173-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0001:691700-691807	+	161,036	1,212.21	GUGCUGUAGCUAACGCGUU	miR6173	OtherRNA	miRBase21-BestBlastHit
hbr-MIR166b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0029:2847818-2847937	+	36,585	275.40	UCGGACCAGGCUUCAUUCCCC	miR166	MIRNA	miRBase21-BestBlastHit
hbr-MIR6175-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0031:338022-338162	+	16	0.12	UGGUGGCUUUUAGGGCUCAAG	miR6175	nearMIRNA	miRBase21-BestBlastHit
hbr-MIR6168-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0036:2721120-2721208		0	0.00			NotExpressed	miRBase21-BestBlastHit
hbr-MIR408a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0056:2268689-2268816	+	13,801	103.89	UGCACUGCCUCUUCCCUGGC	miR408	MIRNA	miRBase21-BestBlastHit
hbr-MIR2118-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0065:716643-716782	+	8,368	62.99	GUUCCCAUGCCACCCAUUUCUA	miR2118	MIRNA	miRBase21-BestBlastHit
hbr-MIR6172-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0066:2439747-2439886	-	10	0.08	UGGUCCAUUAUGAAUUUAAAA	miR6172	siRNA21	miRBase21-BestBlastHit
hbr-MIR6168-m2	Hevea brasiliensis (Rubber Tree) 0	scaffold0080:1714609-1714697	.	2	0.02	AAGUUGAUGAUCUGUUUGUAAGAU		siRNA21	miRBase21-BestBlastHit
hbr-MIR6173-m2	Hevea brasiliensis (Rubber Tree) 0	scaffold0093:2080203-2080310	-	12,508	94.16	GACCCGUGCAGUGCUGUAGCUA		OtherRNA	miRBase21-BestBlastHit
hbr-MIR6173-m3	Hevea brasiliensis (Rubber Tree) 0	scaffold0093:2081998-2082105	-	10,705	80.58	GACCCGUGCAGUGCUGUAGCU		OtherRNA	miRBase21-BestBlastHit
hbr-MIR319-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0105:1229323-1229543	-	785	5.91	UUGGACUGAAGGGAGCUCCC	miR319	MIRNA	miRBase21-BestBlastHit
hbr-MIR6485-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0123:1661366-1661455	.	578	4.35	CAUGAGUGGAUAUAUAGGAAU	miR6485	OtherRNA	miRBase21-BestBlastHit
hbr-MIR482b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0159:1127895-1128044	-	120,968	910.59	GGAAUGGGCGGUUUGGGAAAG	miR482	MIRNA	miRBase21-BestBlastHit
hbr-MIR6168-m3	Hevea brasiliensis (Rubber Tree) 0	scaffold0160:1564803-1564891		0	0.00			NotExpressed	miRBase21-BestBlastHit
hbr-MIR408b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0214:972346-972465	+	2,955	22.24	UGCACUGCCUCUUCCCUGGC	miR408	MIRNA	miRBase21-BestBlastHit
hbr-MIR6167-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0217:546466-546533	-	556	4.19	CAGGUGGAAGCUUUGAC	miR6167	OtherRNA	miRBase21-BestBlastHit
hbr-MIR6169-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0337:862881-863037	.	56	0.42	AUUUCAUGCUGGAACUGUCCAAGU		siRNA24	miRBase21-BestBlastHit
hbr-MIR6173-m4	Hevea brasiliensis (Rubber Tree) 0	scaffold0400:135697-135804		0	0.00			NotExpressed	miRBase21-BestBlastHit
hbr-MIR6483-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0404:574835-574952	-	1,129	8.50	ACCUAAUUUUAUUGUAGA	miR6483	OtherRNA	miRBase21-BestBlastHit
hbr-MIR396a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0486:876290-876375	+	50,146	377.48	UUCCACAGCUUUCUUGAACUU	miR396	MIRNA	miRBase21-BestBlastHit
hbr-MIR6166-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0602:17782-17846	-	39	0.29	AUUGGAUAACGGGAUUACAUGGU	miR6166	OtherRNA	miRBase21-BestBlastHit
hbr-MIR6170-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0665:424036-424092	-	16	0.12	UUUUCUUUCUGUUUCUUGGA	miR6170	siRNA20	miRBase21-BestBlastHit
hbr-MIR6174-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0728:43778-43874	+	9	0.07	UGCUAAGCUGUCAGACUUUGG	miR6174	siRNA21	miRBase21-BestBlastHit
hbr-MIR156-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0769:508835-508953	+	1,153	8.68	UUGACAGAAGAUAGAGAGCAC	miR156	MIRNA	miRBase21-BestBlastHit
hbr-MIR166a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0821:359793-359919	+	1,020,429	7,681.34	UCGGACCAGGCUUCAUUCCUC	miR166	MIRNA	miRBase21-BestBlastHit
hbr-MIR6483-m2	Hevea brasiliensis (Rubber Tree) 0	scaffold0944:179887-180004	-	813	6.12	ACCUAAUUUUAUUGUAGA	miR6483	OtherRNA	miRBase21-BestBlastHit
hbr-MIR6168-m4	Hevea brasiliensis (Rubber Tree) 0	scaffold0944:272177-272265	+	1	0.01	GUGGACUGCUGCUGCUGUGGAGGA	miR6168	siRNA24	miRBase21-BestBlastHit
hbr-MIR6482-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold0957:302783-302876	-	48	0.36	CCCAGCUCGUAGUCUUGGU	miR6482	OtherRNA	miRBase21-BestBlastHit
hbr-MIR396b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1011:192107-192260	+	762,464	5,739.50	UUCCACAGCUUUCUUGAACUG	miR396	MIRNA	miRBase21-BestBlastHit
hbr-MIR159a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1026:270259-270479	-	113,700	855.88	UUUGGAUUGAAGGGAGCUCUA	miR159	MIRNA	miRBase21-BestBlastHit
hbr-MIR159b-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1026:270259-270472	-	113,700	855.88	UUUGGAUUGAAGGGAGCUCUA	miR159	MIRNA	miRBase21-BestBlastHit
hbr-MIR398-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1129:195945-196084	-	468	3.52	GGAGCGACCUGAGAUCACAUG	miR398	MIRNA	miRBase21-BestBlastHit
hbr-MIR9387-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1309:97185-97285	-	4	0.03	AGAUUUCUUCCUAAUUAGUAGAAC	miR9387	siRNA24	miRBase21-BestBlastHit
hbr-MIR6483-m3	Hevea brasiliensis (Rubber Tree) 0	scaffold1309:159740-159857	-	800	6.02	ACCUAAUUUUAUUGUAGA	miR6483	OtherRNA	miRBase21-BestBlastHit
hbr-MIR476-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1336:127563-127688	+	2,380	17.92	UAAUCCUUCUUUGCAAAGUCC	miR476	MIRNA	miRBase21-BestBlastHit
hbr-MIR9386-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1467:107717-107832	-	598,593	4,505.95	UUUGCAGUUCGAAAGUGGAAGC	miR9386	MIRNA	miRBase21-BestBlastHit
hbr-MIR482a-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1566:33818-33930	+	183,420	1,380.71	AGAUGGGUGGCUGGGCAAGAAG	miR482	MIRNA	miRBase21-BestBlastHit
hbr-MIR6171-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold1767:8327-8487	+	14	0.11	AUGUGGAUUGCUGAAGGCUUU	miR6171	OtherRNA	miRBase21-BestBlastHit
hbr-MIR6484-m1	Hevea brasiliensis (Rubber Tree) 0	scaffold2734:9306-9416	-	11,074	83.36	UCAAUGGAGCAGUAGAUUUGU		siRNA21	miRBase21-BestBlastHit
hbr-MIR6484-m2	Hevea brasiliensis (Rubber Tree) 0	scaffold5327:2717-2827	-	806	6.07	UACACCUUGUGAAUUUUGGCU		siRNA21	miRBase21-BestBlastHit