het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Malus x domestica (Apple) genome build 3.0 (mdm-b3.0)

Version v3.0 of Malus x domestica cv. Golden Delicious from The Genome Database for Rosaceae

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mdm-MIR172i-m1Malus x domestica (Apple) 3.0Scaffold_lg11_301549:5128123-5128303-2,5875.72GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
mdm-MIR172j-m1Malus x domestica (Apple) 3.0Scaffold_lg11_301549:5128123-5128303-2,5875.72GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
mdm-MIR172k-m1Malus x domestica (Apple) 3.0Scaffold_lg11_301549:5128123-5128303-2,5875.72GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
mdm-MIR156t-m1Malus x domestica (Apple) 3.0Scaffold_lg11_304338:714819-714909-2380.53GCUUUCUCUUCUUCUGUCAUCmiR156nearMIRNAmiRBase21-BestBlastHit
mdm-MIR156u-m1Malus x domestica (Apple) 3.0Scaffold_lg11_304338:714819-714909-2380.53GCUUUCUCUUCUUCUGUCAUCmiR156nearMIRNAmiRBase21-BestBlastHit
mdm-MIR156v-m1Malus x domestica (Apple) 3.0Scaffold_lg11_304338:714819-714909-2380.53GCUUUCUCUUCUUCUGUCAUCmiR156nearMIRNAmiRBase21-BestBlastHit
mdm-MIR482a-m1Malus x domestica (Apple) 3.0Scaffold_lg13_302468:2024526-2024580-62,608138.35UCUUUCCUAUCCCUCCCAUUCCmiR482nearMIRNAmiRBase21-BestBlastHit
mdm-MIR172i-m2Malus x domestica (Apple) 3.0Scaffold_lg13_303815:119663-119843-2,6075.76GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
mdm-MIR172j-m2Malus x domestica (Apple) 3.0Scaffold_lg13_303815:119663-119843-2,6075.76GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
mdm-MIR172k-m2Malus x domestica (Apple) 3.0Scaffold_lg13_303815:119663-119843-2,6075.76GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
mdm-MIR171a-m1Malus x domestica (Apple) 3.0Scaffold_lg15_313395:215005-215032+3,6258.01UGAUUGAGCCGCGCCAAUAUCmiR171nearMIRNAmiRBase21-BestBlastHit
mdm-MIR171b-m1Malus x domestica (Apple) 3.0Scaffold_lg15_313395:215005-215032+3,6258.01UGAUUGAGCCGCGCCAAUAUCmiR171nearMIRNAmiRBase21-BestBlastHit
mdm-MIR5225c-m2Malus x domestica (Apple) 3.0Scaffold_lg17_307499:3011634-3011695+2120.47UUCAUCCCUCCUCGACUGAAGUmiR5225nearMIRNAmiRBase21-BestBlastHit
mdm-MIR169e-m1Malus x domestica (Apple) 3.0Scaffold_lg17_313414:206809-207016+8,43418.64UAGCCAGGGAUGACUUGCCUmiR169nearMIRNAmiRBase21-BestBlastHit
mdm-MIR169f-m1Malus x domestica (Apple) 3.0Scaffold_lg17_313414:206809-207016+8,43418.64UAGCCAGGGAUGACUUGCCUmiR169nearMIRNAmiRBase21-BestBlastHit
mdm-MIR398c-m1Malus x domestica (Apple) 3.0Scaffold_lg1_300285:121962-122062-241,173532.95UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAmiRBase21-BestBlastHit
mdm-MIR398b-m1Malus x domestica (Apple) 3.0Scaffold_lg1_300285:121964-122061-241,172532.95UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAmiRBase21-BestBlastHit
mdm-MIR156ad-m1Malus x domestica (Apple) 3.0Scaffold_lg2_302643:6342274-6342387+6001.33UGACAGAAGAAAGUGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
mdm-MIR156ae-m1Malus x domestica (Apple) 3.0Scaffold_lg2_302643:6342274-6342387+6001.33UGACAGAAGAAAGUGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
mdm-MIR156f-m1Malus x domestica (Apple) 3.0Scaffold_lg2_313555:394679-394888+3410.75GCUCAUGUCUCUUUCUGUCAGCmiR156nearMIRNAmiRBase21-BestBlastHit
mdm-MIR166d-m2Malus x domestica (Apple) 3.0Scaffold_lg6_314817:14855-14886-317,507701.64UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAmiRBase21-BestBlastHit
mdm-MIR171a-m2Malus x domestica (Apple) 3.0Scaffold_lg8_302330:555710-555737+5,12411.32UGAUUGAGCCGCGCCAAUAUCmiR171nearMIRNAmiRBase21-BestBlastHit
mdm-MIR171b-m2Malus x domestica (Apple) 3.0Scaffold_lg8_302330:555710-555737+5,12411.32UGAUUGAGCCGCGCCAAUAUCmiR171nearMIRNAmiRBase21-BestBlastHit
mdm-MIR156k-m1Malus x domestica (Apple) 3.0Scaffold_lg8_303171:1898376-1898520-3380.75GCUCAUGUCUCUUUCUGUCAGCmiR156nearMIRNAmiRBase21-BestBlastHit