het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Malus x domestica (Apple) genome build 3.0 (mdm-b3.0)

Version v3.0 of Malus x domestica cv. Golden Delicious from The Genome Database for Rosaceae

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mdm-MIR5225c-m1Malus x domestica (Apple) 3.0Scaffold_lg0_308122:1542-1603-60.01UCAUCUGUCCUCGACUGAAmiR5225OtherRNAmiRBase21-BestBlastHit
mdm-MIR396f-m1Malus x domestica (Apple) 3.0Scaffold_lg15_313298:701644-701796.472,6751,044.54UUCCACGGCUUUCUUGAACUGmiR396OtherRNAmiRBase21-BestBlastHit
mdm-MIR396g-m1Malus x domestica (Apple) 3.0Scaffold_lg15_313298:701658-701783.472,6741,044.53UUCCACGGCUUUCUUGAACUGmiR396OtherRNAmiRBase21-BestBlastHit
mdm-MIR159a-m1Malus x domestica (Apple) 3.0Scaffold_lg3_310100:626333-626455.1,0812.39UUGGAUUGAAGGGAGCUCCmiR159OtherRNAmiRBase21-BestBlastHit
mdm-MIR159b-m1Malus x domestica (Apple) 3.0Scaffold_lg3_310100:626333-626455.1,0812.39UUGGAUUGAAGGGAGCUCCmiR159OtherRNAmiRBase21-BestBlastHit
mdm-MIR159c-m1Malus x domestica (Apple) 3.0Scaffold_lg3_310100:626333-626455.1,0812.39UUGGAUUGAAGGGAGCUCCmiR159OtherRNAmiRBase21-BestBlastHit
mdm-MIR390e-m1Malus x domestica (Apple) 3.0Scaffold_lg4_306330:522883-522985+25,30155.91AAGCUCAGGAGGGAUAGCGCCmiR390OtherRNAmiRBase21-BestBlastHit
mdm-MIR390f-m1Malus x domestica (Apple) 3.0Scaffold_lg4_306330:522883-522985+25,30155.91AAGCUCAGGAGGGAUAGCGCCmiR390OtherRNAmiRBase21-BestBlastHit
mdm-MIR482a-m3Malus x domestica (Apple) 3.0Scaffold_lg6_301751:3884018-3884077-580.13CAAACUCUAAACCCUAAAACUCCOtherRNAmiRBase21-BestBlastHit
mdm-MIR7126-m1Malus x domestica (Apple) 3.0Scaffold_lg7_315255:129180-129327+1520.34CCGCAAUGACAGGCCAUCCAAUUCUAUACACUUGAUAUGAGCCCCOtherRNAmiRBase21-BestBlastHit
mdm-MIR477a-m6Malus x domestica (Apple) 3.0Scaffold_lg8_314097:126789-126811-30.01UCCCCCACAAUCUAACACCCUOtherRNAmiRBase21-BestBlastHit